Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00826 ATGGCCTTAGCTGGCGGCCGGTTCACCGGGGGCGTCATCTTTCTCATATTTCTGCAAATTATTCTCCGCCGTGGAGTCGTCCACGGAGACAGCTTTTACGAGCGGCAGAAGCCTAAGCAGTGGAACAACAATAATGGGTGTGATTTTTACGAAGGGAGCTGGGTTTACGACGTGTCGTACCCACTTTACGACGCGTCGAACTGTCCCTTCATCGGTGACGGCTTTAACTGCCAGAAGAATGGTCGCCCGGACTCCGAATACCTCAAGTTCCGGTGGCAGCCCCGCCGCTGTGACCTCCCCAGATTCAATGGTGAAGATTTGCTAGAGAGATACAGAGGGAAGAAGATAATGGTAGTGGGTGATTCATTGAGTAATAACATGTGGCAGTCATTAACATGCATGCTACACACTGCTGTCCCAAATTCCAATTATACCCTTACCACTCACAACTCTCTCTCGACCTTTTTCTTTCCTGAATATGAGACATCAGTAATGTATTTGAAAAATGGGTTTCTAGTGGATTTAGTGAAAGAGAAAATAGGGAAAGTGCTAAAATTGGAGTCCATTAGTAGAGGAGATGAGTGGAAAAACGTTGACTTGATGATTTTCAACACTTATCATTGGTGGACTCACACTGGCCATTATAAAACATGGGATTTCTTCCAAGTAGGAGACAAATTGGTGAAAGAAATGGATAGAATGGAAGCTTTCAAGATTGGTTTGACAACTTGGGGTAAATGGCTTGATTCCAATATCAATCCTTCAAACACCATTGTTTTCTTCCAAGGTGTTTCTGCCGTTCATATTGATGGAAATGATTGGGGAGAGGCATCGACAAAGAATTGTCAAGGAGAGAAGCAACCGATAAAAGGATCAAGATATCCAGGGCCAAGTCTCGAAGGAGAAGCCATAGCGAAGAATGTACTAAGCGACATTGTGACGCCAGTCTATTTACTTGATGTCACATTGTTGACTCAACTTAGAAAAGATGGACATCCTTCCAACTACACTACTTCCAATAATTCTACCCCTCTTCTTGATTGTAGCCATTGGTGTCTCGCGGGTGTTCCTGATACTTGGAATCTTATCCTTTTTGCTACTTTGTTTCAAAATTGA 1116 43.64 MALAGGRFTGGVIFLIFLQIILRRGVVHGDSFYERQKPKQWNNNNGCDFYEGSWVYDVSYPLYDASNCPFIGDGFNCQKNGRPDSEYLKFRWQPRRCDLPRFNGEDLLERYRGKKIMVVGDSLSNNMWQSLTCMLHTAVPNSNYTLTTHNSLSTFFFPEYETSVMYLKNGFLVDLVKEKIGKVLKLESISRGDEWKNVDLMIFNTYHWWTHTGHYKTWDFFQVGDKLVKEMDRMEAFKIGLTTWGKWLDSNINPSNTIVFFQGVSAVHIDGNDWGEASTKNCQGEKQPIKGSRYPGPSLEGEAIAKNVLSDIVTPVYLLDVTLLTQLRKDGHPSNYTTSNNSTPLLDCSHWCLAGVPDTWNLILFATLFQN* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5779957 5781619 - CsaV3_4G008260.1 Csa04g00826 526436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00826 371 Pfam PMR5 N terminal Domain 46 98 IPR025846 -
Csa04g00826 371 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 42 42 370 - -
Csa04g00826 371 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 99 366 IPR026057 GO:0016740
Csa04g00826 371 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 42 370 IPR029962 GO:0016413
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00826 - - - csv:101211401 779.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00826 Csa-Chr4:5779957 Csa06g02405 Csa-Chr6:21467983 1.63E-129 dispersed
Csa04g00826 Csa-Chr4:5779957 Csa04g00827 Csa-Chr4:5787010 6.98E-132 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g39 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00597 . . . . . . . . . . . . . . . Csa04g00826 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014845 0 0 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 0 1 2 1 0 0 1 1 0 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00826 Csa_Chr04 FPKM 5.849153 7.24774 1.549946 1.694427 16.854 15.849798 20.163105 0.0 0.0 0.0