Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00828 ATGGATTTTCCAGGTTCTCTATTGATCAGGATTCTCGCCTTTTTTCTTCCGTGGATTTTGCTGTTCCAGGCATTTGGATCCGACGCTCAGCTTTTGCCTGAATCCGAAGTAAAAACCCTTCAAACAATATCTTCAAAACTAGAGAACTTAAGCTGGAATGTAACCCGGAGTTCTTGCATTCGAGGTGAAGGCTTTTCCAATCAAGCTTTTCAGGGGAACCAAATCTTGAGGAATATCTCATGCAATTGTACTTCCACTCTTTGTCATGTGACAATTGTCCTGCTTAAGGGTCTCAATCTAACAGGAACTTTTCCAGCTGAATTTGGTAATCTTACTCATCTGCAGGAACTTGATCTTACTCGCAACCATATTAATGGCCAGCTACCCAGTAGCCTTGCCAATGCTCCTCTTGTCAAACTTTCTCTCTTGGGAAACAGGCTAAACGGTTCAATTCCCAAGGAAATTGGTGAAATTGGCACCCTCGAAGAGCTGATCTTGGAAGACAACCAGCTAACTGGAAGTCTACCGGCCAGCCTTGGAAATCTGAACAGTTTGAGAAGACTGCTTCTGTCTGCAAACAACTTCACAGGAAAAATACCAGACTCATTTGGAAAGTTAACGAACTTGGTTGATTTTAGAGTAGATGGGAATGGACTGTCTGGAAAGATTCCTGAATTTATTGGGAATTGGATCAACCTTGATAGACTGGATATGCAAGGAACATCGATGGAAAATCCCATTCCTTCTACAATATCTCAATTGAAGAACCTGACTCAATTGAGGATATCTGACTTGAAGGGATCCTTTATAAGTTTCCCCAATTTGACAGATATGATAAACATGAAAGAATTGGTCCTGAGGAACTGTTTAATTAACGGTTCAATCCCTGAGTATATTGGAGAAATGAACAAATTATCTACCCTGGATCTAAGCTTCAACCATTTAAATGGTGACATTCCTGAGACATTTCAGAATCTGATGAAGAGAAAGATAGACTTCATGTTTCTGACAAACAACTCATTGAGTGGTGAAGTGCCCGGTTGGATCTTGAGTAGCAAAAAGAACATAGATTTGTCTTACAACAATTTTTCAGGGTCTACTCTTGCTAGTTGCCAACAATCACCTGTGAACTTGATTGCAAGTTATCCACCGGCCACAAATCATCAAGTTCCTTGGTGCCTCAAGAAAGACCTTCCATGCTCAGGAAAAGCTGAATATCATTCCTTATTTATTAATTGTGGAGGAACTAGAGTGACGGCTGATGGGCATGATTATGAAGAGGACTTAACTACAGAAGGCAAGTCAAATTTCTTTTCTGTTTCAGAAAAATGGGCTTATAGCAGTACAGGAGTTTTTCTGGGTGATGAAAATGCTGACTATTTAGCTACAAATAAGTTCGGGCTGAATGTGAGTGGTCCACGCTATTATCAAAATGCCCGACTTTCCCCTCTCTCCCTAAAATATTATGGCCTTTGCTTGCGAAGCGGAAGCTACAATGTGAAGCTCCACTTTGCTGAAATTATGTACTCGAATGATCAAACTTTTAGCAGCCTGGGAAAGCGTATATTTGATATCTCAATTCAAGGAAAACTAGTGAAGAAGGATTTCAATATTGTGGATGCAGCTGGGGGAGTTGGTAAGAACTTCACAGTGGAAGATAAAAATGTTCTTGTCAATGGCAGTACCCTTGAGATTAATCTATATTGGGCTGGTAAAGGAACCACAGCAGTGCCAGACAGAGGAGTTTATGGTCCCCTTATTTCTGCTATCACAGTTACACCAAACTTTAAAATCAATGAGGGAGGACTATCATCTGGAGCACTTGCCGGCATCATAGTTTCTTCATTTTTAGTAGTCATCATATTGGTCCTAGTATTTCTTTGGATGACAGGTTACATATGTAAGAAGGAAGACCTAGCTAATGAACTTTCTGGCATAGATTTACAAACGGGTCATTTTACCTTGAAACAAATTAAAGCTGCCACCAACAATTTTGATCCTAAAAGTAAAATAGGCGAAGGTGGATTTGGGCCTGTCTACAAGGGTGTATTATCAGATGGTGCTTTGATTGCCGTGAAGCAACTCTCCTCGAAATCGAAGCAAGGGAGCCGTGAGTTTGTTACTGAGATTGGCATGATATCTGCATTGCAACACCCAAACCTTGTTAAGCTCTATGGCTGCTGCGTTGAGGGAAACCAATTGTTGCTTGTATATGAATATATGGAAAACAATAGTCTTGCTCGTGCACTTTTCGGTCGAGAGGAACAGCGGCTACACCTTGACTGGCGAACAAGGAAGAAGATATGCTTGGAGATAGCTAGGGGATTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATTGTTCATAGAGACATAAAGGCCACAAATGTGCTGCTCGATAAAGATCTTAACGCTAAGATTTCTGATTTTGGTTTGGCTAAGCTTGATGAAGAGGAAAACACCCACATCAGTACACGAATTGCTGGAACCATTGGTTATATGGCACCTGAGTATGCAATGAGAGGATACTTGACCGACAAGGCAGATGTTTACAGCTTTGGAATAGTTGCCTTAGAGATAGTTAGCGGGAAAAGTAACACAAATTACAGGCCGAAAGAAGAGTTTGTTTATCTTCTTGATTGGGCCTATGTATTGGAAGAGCAAGGTAATCTTCTAGAACTAGCAGATCCAGATCTTGGTTCAAATTACTCATCAGAGGAAGCAATGAGGATGCTGAACGTAGCTCTCTTATGCACCAACCCATCTCCGACTCTCAGACCAACCATGTCTTCTGTGGTGAGTATGCTTGAAGGTAAGATTGCAGTCCAAGCACCGATCATCAAGCGCACTTCTTCCGGCCAAGATCCAAGGTTTAGAGCCTTCGAGAAGCTCTCACACGACAGTCGATCGCAGATTTCAAGCTCAACCGTTTCTCTAGATGCTGAGCCTCAAAAAAGCATGTTAATGGATGGGCCATGTCCCGATTCTTCAGTGACTATTGACACCAATGGGAATAATCACTACCATTCTGCATCGAGTGATCCCCTTGAGAATCATCGTCGTGTGGATAACTTGAAGGATTCAGCTAATTAA 3093 41.45 MDFPGSLLIRILAFFLPWILLFQAFGSDAQLLPESEVKTLQTISSKLENLSWNVTRSSCIRGEGFSNQAFQGNQILRNISCNCTSTLCHVTIVLLKGLNLTGTFPAEFGNLTHLQELDLTRNHINGQLPSSLANAPLVKLSLLGNRLNGSIPKEIGEIGTLEELILEDNQLTGSLPASLGNLNSLRRLLLSANNFTGKIPDSFGKLTNLVDFRVDGNGLSGKIPEFIGNWINLDRLDMQGTSMENPIPSTISQLKNLTQLRISDLKGSFISFPNLTDMINMKELVLRNCLINGSIPEYIGEMNKLSTLDLSFNHLNGDIPETFQNLMKRKIDFMFLTNNSLSGEVPGWILSSKKNIDLSYNNFSGSTLASCQQSPVNLIASYPPATNHQVPWCLKKDLPCSGKAEYHSLFINCGGTRVTADGHDYEEDLTTEGKSNFFSVSEKWAYSSTGVFLGDENADYLATNKFGLNVSGPRYYQNARLSPLSLKYYGLCLRSGSYNVKLHFAEIMYSNDQTFSSLGKRIFDISIQGKLVKKDFNIVDAAGGVGKNFTVEDKNVLVNGSTLEINLYWAGKGTTAVPDRGVYGPLISAITVTPNFKINEGGLSSGALAGIIVSSFLVVIILVLVFLWMTGYICKKEDLANELSGIDLQTGHFTLKQIKAATNNFDPKSKIGEGGFGPVYKGVLSDGALIAVKQLSSKSKQGSREFVTEIGMISALQHPNLVKLYGCCVEGNQLLLVYEYMENNSLARALFGREEQRLHLDWRTRKKICLEIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLEEQGNLLELADPDLGSNYSSEEAMRMLNVALLCTNPSPTLRPTMSSVVSMLEGKIAVQAPIIKRTSSGQDPRFRAFEKLSHDSRSQISSSTVSLDAEPQKSMLMDGPCPDSSVTIDTNGNNHYHSASSDPLENHRRVDNLKDSAN* 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5796762 5810936 + CsaV3_4G008280.1 Csa04g00828 526438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00828 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Csa04g00828 1030 Gene3D Ribonuclease Inhibitor 32 268 IPR032675 -
Csa04g00828 1030 PANTHER - 68 986 - -
Csa04g00828 1030 Pfam Malectin domain 409 590 IPR021720 -
Csa04g00828 1030 Pfam Protein kinase domain 667 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00828 1030 Gene3D Ribonuclease Inhibitor 269 377 IPR032675 -
Csa04g00828 1030 CDD STKc_IRAK 671 938 - -
Csa04g00828 1030 MobiDBLite consensus disorder prediction 964 1030 - -
Csa04g00828 1030 MobiDBLite consensus disorder prediction 996 1012 - -
Csa04g00828 1030 SUPERFAMILY Protein kinase-like (PK-like) 648 948 IPR011009 -
Csa04g00828 1030 ProSiteProfiles Protein kinase domain profile. 665 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00828 1030 SMART serkin_6 665 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00828 1030 Gene3D - 406 595 - -
Csa04g00828 1030 MobiDBLite consensus disorder prediction 1013 1030 - -
Csa04g00828 1030 MobiDBLite consensus disorder prediction 967 982 - -
Csa04g00828 1030 SUPERFAMILY L domain-like 76 326 - -
Csa04g00828 1030 Pfam Leucine Rich Repeat 304 326 IPR001611 GO:0005515
Csa04g00828 1030 Gene3D Phosphorylase Kinase; domain 1 632 740 - -
Csa04g00828 1030 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 68 986 - -
Csa04g00828 1030 Gene3D Transferase(Phosphotransferase) domain 1 741 948 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00828 Csa-Chr4:5796762 Csa04g02263 Csa-Chr4:23267886 0 dispersed
Csa04g00828 Csa-Chr4:5796762 Csa04g02258 Csa-Chr4:23201564 9.05E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78130 PF00069 Pkinase 1.00E-49 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00828 - - csv:101211151 2013.04