Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00829 ATGGCGACTCACCTCTTTTCTCGCTCTCTCCCCAAAACCCTAATCTGGACGTCTACGTTCTCTCGTTCCTTTCTCACTGCCACCGGAGCCGCCATCTCCGCCTCTTCCCCTTCCTCTTCCTCCCTTATCCGCCGCCTCCGTCCCCTCGCTGCTATACTCGCCGCTGATTTCAGATGTCACTCTGCGGCTCCCAGCCTGAGAGACTTCTCTACCCGTGCCACTTCTTCGTCTCTCAATGATCCCAATCCTAACTGGTCTAATCGCCCACCCAAGGAGACCATTTTGCTTGATGGCTGTGATTTTGAACACTGGCTCGTTGTCATGGAGAAGCCTGATGAACAACTCACCAGGGATGAGATTATCGACAGCTATATCAAAACGCTTGCCATGGTTGTCGGAAGTGAGGAAGAAGCTAGAATGAAGATATACTCTGTTTCAACCAGATGCTACTTTGCATTTGGGTGCCTTGTTTCTGAAGAGCTTTCTTACAAAATCAAAGAGCTGCCTAAGGTTCGTTGGGTCCTTCCTGATTCATATTTGGACGTTAAGAATAAAGATTATGGAGGGGAGCCTTTTATAGATGGACAAGCTGTTCCGTATGACCCAAAGTACCACGAGGAATGGATTAGAAACAATGCTAGAGCAAATGAGAGGAATAAGCGCAATGATAGGCCCCGCAATACTGATAGGTCAAGAAACTTTGAGAGGAGGAGGGAAAACATGCAAAATAGAGATTTTCCAAATCCTGCAACTGGACCTAACATGAGTGCACCAGCTCCAGGTGGTATGCCTCCCAACAACTTTAATCCCAGCATGCCTCCTCACAACCGCCAAGGCGATTATCCAGGAGGACCACCACCTCCGAACAATTTTAACAGACCACCACCGCCACCACCGCACAACTACAGCGGACCACCACCACCACCACCACACAACTTCAGCGGACCACCACCACCACCACCACACAACTTCAGCGGACCACCACCACCACCACCGCACAACTTCAACGGACCACCACCACCACCACCGCACAACTTCAACGGACCACCACCACCACCGTACAACTTCAACGGGCCACCACCTCCTCCACCAAACAACTTCAACGGACCACCACCTCCTCCACCGAACAACTTCAACGGACCACCACCACGCAACTATGCTTCAGCATCACCAAATCACGGAGGAGGAGGAGGAGGAGCACCCCACAACTATGGGGGGCCACAGGAAAACAACTATTGGGGAGCACAGCAGCCAAACAACTATGGTGGACCTTCAAACTCTGGCCGGGGACCTGCATAG 1299 51.66 MATHLFSRSLPKTLIWTSTFSRSFLTATGAAISASSPSSSSLIRRLRPLAAILAADFRCHSAAPSLRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPDEQLTRDEIIDSYIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKNKDYGGEPFIDGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNTDRSRNFERRRENMQNRDFPNPATGPNMSAPAPGGMPPNNFNPSMPPHNRQGDYPGGPPPPNNFNRPPPPPPHNYSGPPPPPPHNFSGPPPPPPHNFSGPPPPPPHNFNGPPPPPPHNFNGPPPPPYNFNGPPPPPPNNFNGPPPPPPNNFNGPPPRNYASASPNHGGGGGGAPHNYGGPQENNYWGAQQPNNYGGPSNSGRGPA* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5813261 5815722 + CsaV3_4G008290.1 Csa04g00829 526439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00829 432 MobiDBLite consensus disorder prediction 279 381 - -
Csa04g00829 432 MobiDBLite consensus disorder prediction 409 432 - -
Csa04g00829 432 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 32 431 IPR039206 GO:0016554
Csa04g00829 432 MobiDBLite consensus disorder prediction 211 243 - -
Csa04g00829 432 MobiDBLite consensus disorder prediction 211 432 - -
Csa04g00829 432 PANTHER COBALT ION BINDING PROTEIN-RELATED 32 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00829 - - - csv:101210902 507.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01187 Csa-Chr3:9199590 Csa04g00829 Csa-Chr4:5813261 8.95E-47 dispersed
Csa04g00829 Csa-Chr4:5813261 Csa06g01787 Csa-Chr6:15816020 1.31E-58 dispersed
Csa04g00829 Csa-Chr4:5813261 Csa04g00830 Csa-Chr4:5816343 7.81E-39 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g2 . . . . . . . . . . Cma01g01278 . Car01g01093 Car09g00605 Sed04g2513 Cpe06g00537 . Bhi09g03588 Tan01g4237 Cmetu07g0669 . Hepe01g1479 Mch11g0969 . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01331 Cmo09g00669 . . . . . . . . . . . . . . . . . . . . . Csa04g00829 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002481 2 4 2 1 2 3 2 2 2 2 1 3 2 5 2 2 3 2 2 3 2 1 1 1 1 1 1 2 1 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00829 Csa_Chr04 FPKM 0.0 0.0 0.0 0.0 0.359593 0.702686 0.26016 0.158791 0.215014 0.441979