Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00841 ATGAAAGAACTTACCCTTTCTGTTTCTGCTCTCACACTTCTTTCTCACTCCCCCATTCGAGAGGTGACCCTTCATCTTCCAGAGATGAAACAGCGGCTTCGTTATGGTTGCGCTGTCAGTTCCAAAACCATGTTCATCGATCTCTCCATATTTCTTTTGCTCTCTGTTTCTCACAATTATTCCTTTTCTTGCATTCTACTTAACCTTCTATTTCTACTCCCTCGCACACACCACCATTGCCGGACGCTACCTGTTAATTCTCCTCTGTTCATGGTTATTGGTTTTCTTCATTTGGTGATTTTGTGGGAGAAGGGAGGATTGGCTGCATTATTTATACTTCAGCAAACCACATTATCTATTTATTGTAATATCTGCCAGGCATTCTGGTTGAGTACGGATGAGTCTAGCAAATTGTTTTTGGACAATATTCAAGCAACGGAAGGTGAAACGTGTTACAAGCAATGGAGAACAGGCTACAGAAATAGTCTTCCCATTATTCTTTCTTGTGGTGGGTGGTCCTCCCACCACAAGGGTTGGGAAGGAATCGAGGTTAGGATGTTGTTGAAAGGATATCCATGGCAGATAACGAAACAAAATGGAAAGCTGGTACACGTAAAGACGGGAAAATCCAATGGTTTCCCTCATGGAAAGAGTGAAGATCTAGCTGCAACTCGAATTCAAAATGCATTTCGTACATTTACGGCTAGAAAGGACATACATAATTCGAAAGTACCAGAGAGATGCCAGGATCTAGTTCAAGGTGAAACGGCTACAAAACAAGTGTCAAGCTTCATTCATTCATGGAGCAGAATGCAGCAAGAAATTAGAGCACGTAGGCTCTGTATGGTCACAGAATATCGAGTCAAGCAAAAGAAACTGGAAAATCAGCTGAAGCTTGAGGCTAAAATTCATGAACTTGAGGCAGAATGGTCCGGTGGGTCAGAAACAAAGGAGGAAATACTTTTCAAGATTCAGCAACGAGAAGAAGCTGCTGTAAGACGGGAGCGGGCTATGGCTTATGCATTCTCTCATCAGTGGAGGGCCAATTCCATCTTAGATCTGAGCCCGGCTTCGTATAGCCTTGACAAAGAAAACTGGGGATGGAGCTGGAAGGAGAGATGGATTGCCGCTCGGCCATGGGAGATCCGAGCTAATACTCATCCCACCATTCCAAAGAAGGTGCAAATGAAACAAACAAGCAAAGTCAATAAAGTGACGTATCAATCGGGGTTGAAGGTCTCAAACTTAGCTGGACATTCTTCCTTGAACAACAAGGCGAGTTCAAAGGCCAAAAATTCTGCTATATCCAACTGCTGA 1317 43.36 MKELTLSVSALTLLSHSPIREVTLHLPEMKQRLRYGCAVSSKTMFIDLSIFLLLSVSHNYSFSCILLNLLFLLPRTHHHCRTLPVNSPLFMVIGFLHLVILWEKGGLAALFILQQTTLSIYCNICQAFWLSTDESSKLFLDNIQATEGETCYKQWRTGYRNSLPIILSCGGWSSHHKGWEGIEVRMLLKGYPWQITKQNGKLVHVKTGKSNGFPHGKSEDLAATRIQNAFRTFTARKDIHNSKVPERCQDLVQGETATKQVSSFIHSWSRMQQEIRARRLCMVTEYRVKQKKLENQLKLEAKIHELEAEWSGGSETKEEILFKIQQREEAAVRRERAMAYAFSHQWRANSILDLSPASYSLDKENWGWSWKERWIAARPWEIRANTHPTIPKKVQMKQTSKVNKVTYQSGLKVSNLAGHSSLNNKASSKAKNSAISNC* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5888395 5893194 - CsaV3_4G008410.1 Csa04g00841 526451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00841 438 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 196 430 - -
Csa04g00841 438 PANTHER IQ-DOMAIN 5-RELATED 196 430 - -
Csa04g00841 438 Coils Coil 289 309 - -
Csa04g00841 438 ProSiteProfiles IQ motif profile. 219 247 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00841 - - - cmo:103492919 526.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00841 Csa-Chr4:5888395 Csa06g03677 Csa-Chr6:29529046 3.00E-67 dispersed
Csa04g00841 Csa-Chr4:5888395 Csa05g02825 Csa-Chr5:28733999 7.98E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01776 . 1 470 IQD Protein Family AT3G52290 55.6 5.8e-104 374.8
Csa01g03281 . 1 406 IQD Protein Family AT3G22190 57.6 9.8e-96 347.4
Csa04g02549 . 1 438 IQD Protein Family AT2G26180 60.5 3.4e-117 418.7
Csa06g03677 . 1 274 IQD Protein Family AT2G33990 52.9 1.5e-62 236.5
Csa04g00841 . 217 392 IQD Protein Family AT2G33990 54.7 7.3e-49 191.0
Csa06g03677 . 1 232 IQD Protein Family AT3G15050 51.3 1.2e-56 216.9
Csa04g00841 . 220 393 IQD Protein Family AT3G15050 61.6 7.4e-54 207.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00841 Csa_Chr04 FPKM 36.664722 42.169403 17.833094 19.509424 38.254566 32.473827 40.81221 28.376404 27.357761 27.467493