Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00841 ATGAAAGAACTTACCCTTTCTGTTTCTGCTCTCACACTTCTTTCTCACTCCCCCATTCGAGAGGTGACCCTTCATCTTCCAGAGATGAAACAGCGGCTTCGTTATGGTTGCGCTGTCAGTTCCAAAACCATGTTCATCGATCTCTCCATATTTCTTTTGCTCTCTGTTTCTCACAATTATTCCTTTTCTTGCATTCTACTTAACCTTCTATTTCTACTCCCTCGCACACACCACCATTGCCGGACGCTACCTGTTAATTCTCCTCTGTTCATGGTTATTGGTTTTCTTCATTTGGTGATTTTGTGGGAGAAGGGAGGATTGGCTGCATTATTTATACTTCAGCAAACCACATTATCTATTTATTGTAATATCTGCCAGGCATTCTGGTTGAGTACGGATGAGTCTAGCAAATTGTTTTTGGACAATATTCAAGCAACGGAAGGTGAAACGTGTTACAAGCAATGGAGAACAGGCTACAGAAATAGTCTTCCCATTATTCTTTCTTGTGGTGGGTGGTCCTCCCACCACAAGGGTTGGGAAGGAATCGAGGTTAGGATGTTGTTGAAAGGATATCCATGGCAGATAACGAAACAAAATGGAAAGCTGGTACACGTAAAGACGGGAAAATCCAATGGTTTCCCTCATGGAAAGAGTGAAGATCTAGCTGCAACTCGAATTCAAAATGCATTTCGTACATTTACGGCTAGAAAGGACATACATAATTCGAAAGTACCAGAGAGATGCCAGGATCTAGTTCAAGGTGAAACGGCTACAAAACAAGTGTCAAGCTTCATTCATTCATGGAGCAGAATGCAGCAAGAAATTAGAGCACGTAGGCTCTGTATGGTCACAGAATATCGAGTCAAGCAAAAGAAACTGGAAAATCAGCTGAAGCTTGAGGCTAAAATTCATGAACTTGAGGCAGAATGGTCCGGTGGGTCAGAAACAAAGGAGGAAATACTTTTCAAGATTCAGCAACGAGAAGAAGCTGCTGTAAGACGGGAGCGGGCTATGGCTTATGCATTCTCTCATCAGTGGAGGGCCAATTCCATCTTAGATCTGAGCCCGGCTTCGTATAGCCTTGACAAAGAAAACTGGGGATGGAGCTGGAAGGAGAGATGGATTGCCGCTCGGCCATGGGAGATCCGAGCTAATACTCATCCCACCATTCCAAAGAAGGTGCAAATGAAACAAACAAGCAAAGTCAATAAAGTGACGTATCAATCGGGGTTGAAGGTCTCAAACTTAGCTGGACATTCTTCCTTGAACAACAAGGCGAGTTCAAAGGCCAAAAATTCTGCTATATCCAACTGCTGA 1317 43.36 MKELTLSVSALTLLSHSPIREVTLHLPEMKQRLRYGCAVSSKTMFIDLSIFLLLSVSHNYSFSCILLNLLFLLPRTHHHCRTLPVNSPLFMVIGFLHLVILWEKGGLAALFILQQTTLSIYCNICQAFWLSTDESSKLFLDNIQATEGETCYKQWRTGYRNSLPIILSCGGWSSHHKGWEGIEVRMLLKGYPWQITKQNGKLVHVKTGKSNGFPHGKSEDLAATRIQNAFRTFTARKDIHNSKVPERCQDLVQGETATKQVSSFIHSWSRMQQEIRARRLCMVTEYRVKQKKLENQLKLEAKIHELEAEWSGGSETKEEILFKIQQREEAAVRRERAMAYAFSHQWRANSILDLSPASYSLDKENWGWSWKERWIAARPWEIRANTHPTIPKKVQMKQTSKVNKVTYQSGLKVSNLAGHSSLNNKASSKAKNSAISNC* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5888395 5893194 - CsaV3_4G008410.1 Csa04g00841 526451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00841 438 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 196 430 - -
Csa04g00841 438 PANTHER IQ-DOMAIN 5-RELATED 196 430 - -
Csa04g00841 438 Coils Coil 289 309 - -
Csa04g00841 438 ProSiteProfiles IQ motif profile. 219 247 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00841 Csa-Chr4:5888395 Csa06g03677 Csa-Chr6:29529046 3.00E-67 dispersed
Csa04g00841 Csa-Chr4:5888395 Csa05g02825 Csa-Chr5:28733999 7.98E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00841 - - cmo:103492919 526.939