Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa04g00859 | ATGTCGTTGGGGGTGAGCAATGATGAGGAAGAAGCCCAGCTATTCGCTATGCAACTGGCTAGCGCATCGGTGCTTCCAATGGTGCTGAAGACGGCGATTGAGCTGGATTTGCTGGAGATCATTGGGAGAGGCGGGGAGGGGGCTCTGTTATCTCCATCCCAAATCGCTTCCCAGCTGTCTGGGCTTAAAAACCCTGAGGCCCACGTGATGCTAGACCGCATGTTGCGCCTGCTGGCCAGCTACTCCATCCTCACTTGCTCCCTCGATCCCCTCCCCGATGGCTCCGTCCAGAGGCTCTACGGTCTCGCCCCTGTCTCCAAGTTCTTGATCAAGAATCATGACGGCGTCTCTATTGCCCCTCTTTGTCTCATGAATCAAGACAAGGTCCTCATGGAGAGCTGGTACCATTTGAAAGATGCTGTGCTAGAAGGAGGGATTCCTTTCAATAGAGCCTACGGAATGAGTGCCTTCGAATACCACGGAACAGATCCCAGATTCAACAAGGTGTTTAACAAGGGAATGTCCGACCATTCCACCATTACCATGAAGAAGATTCTGGAGACCTACAAAGGGTTTGAAGGCCTTAATTCAGTGGTGGATGTCGGGGGAGGCACCGGAGCCGTACTCAACATGATTGTTTCCAAGTACCCCTCTATTAGAGGCATCAACTTCGACCTCCCTCATGTCATTCAAGATGCCCCTCCCTACCCAGGCGTGGAACATGTTGGGGGTGACATGTTTGTCAGCGTTCCAAAGGGGGATGCCATTTTCATGAAGTGGATCTGCCACGATTGGAGCGACCACCACTGCCTCAAATTCTTGAAGAATTGCTACGATGCATTGCCGGAGCACGGGAAGGTGATTGTGGCTGAATGCATTCTTCCCTTAGCACCCGACGCTAGCCTCGCCACCAAAGGAGTCATTCACATCGACCTCATAATGCTGGCTCACAACCCCGGAGGCAAAGAAAGAACCGAGAAAGAGTTTCAAGCGTTGTCGAAGGCGGCTGGATTTGATGGTTTTAAGGTCCACTGCTGTGCTTTTAACACTTACGTGATGGAATTTCTCAAGACACCTTAG | 1080 | 51.67 | MSLGVSNDEEEAQLFAMQLASASVLPMVLKTAIELDLLEIIGRGGEGALLSPSQIASQLSGLKNPEAHVMLDRMLRLLASYSILTCSLDPLPDGSVQRLYGLAPVSKFLIKNHDGVSIAPLCLMNQDKVLMESWYHLKDAVLEGGIPFNRAYGMSAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLNSVVDVGGGTGAVLNMIVSKYPSIRGINFDLPHVIQDAPPYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDHHCLKFLKNCYDALPEHGKVIVAECILPLAPDASLATKGVIHIDLIMLAHNPGGKERTEKEFQALSKAAGFDGFKVHCCAFNTYVMEFLKTP* | 360 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6091411 | 6093739 | - | CsaV3_4G008590.1 | Csa04g00859 | 526469 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa04g00859 | 359 | PIRSF | O-mtase | 1 | 357 | IPR016461 | GO:0008168 | |
| Csa04g00859 | 359 | PANTHER | O-METHYLTRANSFERASE | 8 | 357 | IPR016461 | GO:0008168 | |
| Csa04g00859 | 359 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 17 | 357 | IPR016461 | GO:0008168 | |
| Csa04g00859 | 359 | SUPERFAMILY | Winged helix DNA-binding domain | 7 | 112 | IPR036390 | - | |
| Csa04g00859 | 359 | Pfam | Dimerisation domain | 27 | 79 | IPR012967 | GO:0046983 | |
| Csa04g00859 | 359 | Pfam | O-methyltransferase domain | 134 | 338 | IPR001077 | GO:0008171 | |
| Csa04g00859 | 359 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 114 | 355 | IPR029063 | - | |
| Csa04g00859 | 359 | PANTHER | BNAA10G07270D PROTEIN | 8 | 357 | - | - | |
| Csa04g00859 | 359 | CDD | AdoMet_MTases | 198 | 289 | - | - | |
| Csa04g00859 | 359 | Gene3D | - | 4 | 109 | IPR036388 | - | |
| Csa04g00859 | 359 | Gene3D | Vaccinia Virus protein VP39 | 110 | 357 | IPR029063 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g00402 | Csa-Chr3:3428510 | Csa04g00859 | Csa-Chr4:6091411 | 3.64E-142 | dispersed | |
| Csa03g00403 | Csa-Chr3:3438535 | Csa04g00859 | Csa-Chr4:6091411 | 1.70E-140 | dispersed | |
| Csa03g03346 | Csa-Chr3:30330263 | Csa04g00859 | Csa-Chr4:6091411 | 8.47E-77 | dispersed | |
| Csa04g00859 | Csa-Chr4:6091411 | Csa06g01110 | Csa-Chr6:9183736 | 4.07E-69 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa04g00859 | K13066 | - | csv:101204109 | 732.25 |