Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00873 ATGTTGATTTCGTCCGACAATTTGGTTCTGTGGTTGGGGTTTGTGGCCATTTTTGGTAAAGTCATGGGCTCTAGGTTCATTGACACCATTGATACCACATGGTATGAAGCTCATGCTACCTTCTACGGCGACATATCCGGTTATGAGACTATGCAGGGAGCATGTGGGTATGGAAATCTGTTCCAGCAAGGTTATGGGCTAGCAACGGCAGCATTAAGTACCGCATTGTTCAACAACGGTGGAATTTGCGGAGCATGCTTTGAGATAATGTGTGTGAACGATGAACACAACTGGTGCATACCAAATGCAGGGACAATCAAAATAACGGCTACAAACTTTTGCCCGCCAAACTACACAAAAACAGTTGGTGTTTGGTGCAACCCTCCCCAACGTCATTTCGACCTATCTCTTTACATGTTCATCAAAATGGCTCCTTATAGGGCAGGGATTATCCCAGTCCGCTACCGTAGGATGCTTTGCCAGAAACAAGGCGGTCTACGATTTGAGCTCAAAGGAAATCCCTATTGGCTTCTTGTTTTGCTCTACAATGTTGGTGGTGCAGGTGATGTTGTTGATGTTAAGATTAAAGGCTCTTCTACTGGATGGCTTCAAATGTCAAGGAATTGGGGACAAAATTGGCAGGTTGGTACATTTCTTGTGGGGCAAGGTTTGTCCTTTAGAGTCACTACTAGTGATAGAAAGACCATTGAGTTTGATAATGTTGTGCCAAGCTCTTGGCAATTTGGACAAAACTTTGAAGGAAACTCTAATTTCTAG 777 43.89 MLISSDNLVLWLGFVAIFGKVMGSRFIDTIDTTWYEAHATFYGDISGYETMQGACGYGNLFQQGYGLATAALSTALFNNGGICGACFEIMCVNDEHNWCIPNAGTIKITATNFCPPNYTKTVGVWCNPPQRHFDLSLYMFIKMAPYRAGIIPVRYRRMLCQKQGGLRFELKGNPYWLLVLLYNVGGAGDVVDVKIKGSSTGWLQMSRNWGQNWQVGTFLVGQGLSFRVTTSDRKTIEFDNVVPSSWQFGQNFEGNSNF* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6212596 6213670 - CsaV3_4G008730.1 Csa04g00873 526483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00873 258 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Csa04g00873 258 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Csa04g00873 258 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Csa04g00873 258 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Csa04g00873 258 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Csa04g00873 258 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Csa04g00873 258 SUPERFAMILY Barwin-like endoglucanases 33 183 IPR036908 -
Csa04g00873 258 SMART dpbb_1 69 155 IPR007112 -
Csa04g00873 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Csa04g00873 258 PANTHER EXPANSIN-A21-RELATED 32 258 - -
Csa04g00873 258 Pfam Lytic transglycolase 69 155 IPR009009 -
Csa04g00873 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 165 IPR007112 -
Csa04g00873 258 SUPERFAMILY PHL pollen allergen 162 253 IPR036749 -
Csa04g00873 258 PANTHER EXPANSIN-A15 32 258 IPR002963 GO:0009664
Csa04g00873 258 Gene3D - 23 161 IPR036908 -
Csa04g00873 258 Gene3D - 165 258 IPR036749 -
Csa04g00873 258 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Csa04g00873 258 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Csa04g00873 258 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Csa04g00873 258 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Csa04g00873 258 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Csa04g00873 258 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Csa04g00873 258 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Csa04g00873 258 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Csa04g00873 258 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Csa04g00873 258 Pfam Expansin C-terminal domain 167 243 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00873 Csa-Chr4:6212596 Csa06g01206 Csa-Chr6:10229418 1.00E-142 dispersed
Csa04g00873 Csa-Chr4:6212596 Csa04g01497 Csa-Chr4:14702397 6.61E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00873 - - csv:101207961 511.146