Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00880 ATGTCGCCTGCTGATTCTTCACGGGAGGAAAATGTTTACATGGCCAAGTTGGCAGAACAGGCCGAACGATATGAGGAAATGGTAGAGTTCATGGAGAAAGTTGCCAAGACTGTGGATGTCGAGGAGCTGACCGTTGAGGAGAGGAATCTCCTCTCCGTTGCTTACAAGAATGTCATTGGGGCTCGGAGGGCTTCATGGAGGATTATTTCTTCCATTGAGCAGAAGGAAGAGAGTCGGGGAAATGAGGACCACGTTTCAATTATCAAGGATTACCGTGGCAAAATTGAGACTGAACTGAGCAAGATCTGTGATGGAATTTTGAGCCTCCTTGAGTCTCATCTCATCCCATCAGCCTCATCTGCTGAGTCAAAGGTGTTTTATCTCAAAATGAAAGGTGATTACCACAGGTACCTGGCTGAGTTTAAGACTGGAGCTGAAAGGAAAGAGGCAGCTGAGAGCACATTGTTAGCCTACAAGTCTGCTCAGGATATTGCTCTCGCGGAATTAGCCCCTACTCATCCAATTAGGCTAGGTCTTGCTCTTAACTTCTCAGTGTTTTATTATGAGATCCTTAATTCGCCAGACCGAGCTTGCAATTTGGCAAAGCAGGCTTTTGACGAAGCAATTTCTGAGCTTGACACATTGGGTGAAGAATCATACAAGGATAGCACCTTGATCATGCAACTCCTCCGAGACAACTTGACTCTTTGGACTTCTGATATTGGGGATGAAGCTGGCGATGAGATTAAGGAAGCATCAAAACGTGAATCAGGGGAGGGACATGGACAGTAG 792 46.09 MSPADSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSIIKDYRGKIETELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDIGDEAGDEIKEASKRESGEGHGQ* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6317654 6319278 + CsaV3_4G008800.1 Csa04g00880 526490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00880 263 PIRSF 14-3-3 3 250 IPR000308 -
Csa04g00880 263 PANTHER 14-3-3 PROTEIN 5 257 IPR000308 -
Csa04g00880 263 Pfam 14-3-3 protein 14 238 IPR023410 -
Csa04g00880 263 Gene3D - 2 251 IPR036815 -
Csa04g00880 263 Coils Coil 14 34 - -
Csa04g00880 263 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Csa04g00880 263 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Csa04g00880 263 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Csa04g00880 263 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Csa04g00880 263 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Csa04g00880 263 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Csa04g00880 263 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Csa04g00880 263 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Csa04g00880 263 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Csa04g00880 263 SMART 1433_4 8 251 IPR023410 -
Csa04g00880 263 PANTHER 14-3-3-LIKE PROTEIN GF14-F 5 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00880 K06630 YWHAE; 14-3-3 protein epsilon - csv:101222068 511.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02151 Csa-Chr2:19444483 Csa04g00880 Csa-Chr4:6317654 8.82E-127 dispersed
Csa03g04457 Csa-Chr3:38853484 Csa04g00880 Csa-Chr4:6317654 2.08E-159 dispersed
Csa03g04481 Csa-Chr3:39056155 Csa04g00880 Csa-Chr4:6317654 1.35E-136 dispersed
Csa04g00880 Csa-Chr4:6317654 Csa05g02506 Csa-Chr5:26677086 1.68E-130 dispersed
Csa04g00880 Csa-Chr4:6317654 Csa02g02163 Csa-Chr2:19525778 7.24E-164 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02163 CCT 4 242 14-3-3 family AT4G09000 91.2 2.8e-119 425.2
Csa03g04457 CCT 5 242 14-3-3 family AT4G09000 90.8 4.0e-118 421.4
Csa04g00880 . 4 241 14-3-3 family AT4G09000 87.0 2.3e-113 405.6
Csa03g04481 . 11 246 14-3-3 family AT4G09000 75.4 2.5e-99 359.0
Csa02g02225 . 10 246 14-3-3 family AT4G09000 74.7 2.7e-98 355.5
Csa07g00466 . 7 238 14-3-3 family AT4G09000 73.1 1.5e-93 339.7
Csa05g02506 . 4 239 14-3-3 family AT4G09000 72.3 3.2e-91 332.0
Csa06g02080 . 4 239 14-3-3 family AT4G09000 71.8 1.6e-90 329.7
Csa02g02151 CCT,ECH 5 236 14-3-3 family AT4G09000 70.1 3.9e-89 325.1
Csa03g04446 CCT,ECH 5 236 14-3-3 family AT4G09000 71.8 1.6e-87 319.7
Csa02g02163 CCT 6 262 14-3-3 family AT1G78300 89.9 2.3e-124 441.8
Csa03g04457 CCT 5 258 14-3-3 family AT1G78300 90.2 2.6e-123 438.3
Csa04g00880 . 6 253 14-3-3 family AT1G78300 87.1 3.6e-117 417.9
Csa03g04481 . 11 247 14-3-3 family AT1G78300 75.9 4.0e-100 361.3
Csa02g02225 . 11 247 14-3-3 family AT1G78300 75.5 1.2e-99 359.8
Csa07g00466 . 7 247 14-3-3 family AT1G78300 71.2 4.3e-94 341.3
Csa05g02506 . 8 260 14-3-3 family AT1G78300 70.2 2.4e-92 335.5
Csa06g02080 . 8 257 14-3-3 family AT1G78300 69.8 2.4e-92 335.5
Csa02g02151 CCT,ECH 1 250 14-3-3 family AT1G78300 67.9 1.5e-91 332.8
Csa03g04446 CCT,ECH 1 248 14-3-3 family AT1G78300 68.0 7.9e-88 320.5
Csa04g00880 . 6 259 14-3-3 family AT5G38480 90.2 1.5e-123 439.1
Csa02g02163 CCT 6 252 14-3-3 family AT5G38480 85.4 2.2e-114 408.7
Csa03g04457 CCT 6 252 14-3-3 family AT5G38480 85.0 1.1e-113 406.4
Csa02g02225 . 10 251 14-3-3 family AT5G38480 74.4 1.4e-97 352.8
Csa03g04481 . 10 251 14-3-3 family AT5G38480 73.6 1.8e-97 352.4
Csa05g02506 . 8 255 14-3-3 family AT5G38480 73.2 7.2e-94 340.5
Csa07g00466 . 7 247 14-3-3 family AT5G38480 72.0 8.0e-93 337.0
Csa06g02080 . 8 255 14-3-3 family AT5G38480 71.2 3.0e-92 335.1
Csa02g02151 CCT,ECH 5 247 14-3-3 family AT5G38480 71.4 6.8e-92 334.0
Csa03g04446 CCT,ECH 5 242 14-3-3 family AT5G38480 70.8 3.8e-87 318.2
Csa02g02163 CCT 3 242 14-3-3 family AT1G35160 89.6 2.9e-118 421.8
Csa03g04457 CCT 4 242 14-3-3 family AT1G35160 89.1 4.1e-117 417.9
Csa04g00880 . 3 240 14-3-3 family AT1G35160 86.6 2.3e-112 402.1
Csa03g04481 . 11 246 14-3-3 family AT1G35160 76.7 2.7e-100 362.1
Csa02g02225 . 1 246 14-3-3 family AT1G35160 73.6 1.9e-98 355.9
Csa07g00466 . 2 237 14-3-3 family AT1G35160 71.0 2.7e-92 335.5
Csa05g02506 . 8 239 14-3-3 family AT1G35160 73.1 3.9e-91 331.6
Csa06g02080 . 8 239 14-3-3 family AT1G35160 72.6 2.5e-90 328.9
Csa02g02151 CCT,ECH 5 236 14-3-3 family AT1G35160 69.7 3.6e-89 325.1
Csa03g04446 CCT,ECH 5 236 14-3-3 family AT1G35160 71.8 2.0e-87 319.3
Csa04g00880 . 4 254 14-3-3 family AT5G16050 86.5 7.6e-118 420.2
Csa02g02163 CCT 3 253 14-3-3 family AT5G16050 78.9 2.4e-108 388.7
Csa03g04457 CCT 4 251 14-3-3 family AT5G16050 79.1 3.3e-105 378.3
Csa02g02225 . 10 248 14-3-3 family AT5G16050 71.1 1.4e-92 336.3
Csa03g04481 . 10 248 14-3-3 family AT5G16050 70.3 7.1e-92 334.0
Csa05g02506 . 3 246 14-3-3 family AT5G16050 65.4 6.5e-85 310.8
Csa06g02080 . 3 246 14-3-3 family AT5G16050 65.4 8.4e-85 310.5
Csa07g00466 . 1 246 14-3-3 family AT5G16050 65.1 1.9e-84 309.3
Csa02g02151 CCT,ECH 2 247 14-3-3 family AT5G16050 64.9 3.2e-84 308.5
Csa03g04446 CCT,ECH 5 239 14-3-3 family AT5G16050 66.2 4.1e-79 291.6
Csa02g02225 . 9 246 14-3-3 family AT5G10450 87.4 4.0e-114 407.9
Csa03g04481 . 9 246 14-3-3 family AT5G10450 84.9 9.1e-111 396.7
Csa02g02163 CCT 3 251 14-3-3 family AT5G10450 76.4 3.7e-104 374.8
Csa04g00880 . 4 259 14-3-3 family AT5G10450 73.9 1.1e-103 373.2
Csa03g04457 CCT 1 242 14-3-3 family AT5G10450 78.6 2.4e-103 372.1
Csa07g00466 . 1 238 14-3-3 family AT5G10450 68.0 1.7e-88 322.8
Csa02g02151 CCT,ECH 5 236 14-3-3 family AT5G10450 67.2 2.3e-85 312.4
Csa05g02506 . 3 239 14-3-3 family AT5G10450 66.3 1.5e-84 309.7
Csa06g02080 . 3 239 14-3-3 family AT5G10450 64.6 8.0e-83 303.9
Csa03g04446 CCT,ECH 5 236 14-3-3 family AT5G10450 66.8 2.3e-82 302.4
Csa04g00880 . 6 260 14-3-3 family AT3G02520 93.0 1.2e-128 456.1
Csa02g02163 CCT 6 252 14-3-3 family AT3G02520 86.7 1.7e-117 419.1
Csa03g04457 CCT 5 258 14-3-3 family AT3G02520 84.4 3.1e-116 414.8
Csa02g02225 . 10 248 14-3-3 family AT3G02520 75.7 5.4e-100 360.9
Csa03g04481 . 10 248 14-3-3 family AT3G02520 74.9 1.6e-99 359.4
Csa05g02506 . 8 256 14-3-3 family AT3G02520 69.3 2.2e-93 339.0
Csa06g02080 . 8 257 14-3-3 family AT3G02520 69.4 6.4e-93 337.4
Csa02g02151 CCT,ECH 1 249 14-3-3 family AT3G02520 69.4 2.4e-92 335.5
Csa07g00466 . 1 238 14-3-3 family AT3G02520 71.3 4.6e-91 331.3
Csa03g04446 CCT,ECH 1 239 14-3-3 family AT3G02520 70.5 6.2e-88 320.9
Csa02g02225 . 9 246 14-3-3 family AT5G65430 88.7 9.0e-116 413.3
Csa03g04481 . 9 246 14-3-3 family AT5G65430 84.5 1.0e-111 399.8
Csa04g00880 . 7 241 14-3-3 family AT5G65430 79.7 4.6e-104 374.4
Csa03g04457 CCT 1 242 14-3-3 family AT5G65430 79.4 7.9e-104 373.6
Csa02g02163 CCT 8 242 14-3-3 family AT5G65430 80.1 1.8e-103 372.5
Csa07g00466 . 1 238 14-3-3 family AT5G65430 69.7 6.5e-90 327.4
Csa05g02506 . 8 239 14-3-3 family AT5G65430 69.8 8.7e-87 317.0
Csa02g02151 CCT,ECH 5 236 14-3-3 family AT5G65430 68.9 1.5e-86 316.2
Csa06g02080 . 8 239 14-3-3 family AT5G65430 67.7 3.1e-84 308.5
Csa03g04446 CCT,ECH 5 236 14-3-3 family AT5G65430 68.5 1.2e-83 306.6
Csa07g00466 . 1 261 14-3-3 family AT2G42590 81.7 6.0e-118 420.6
Csa05g02506 . 6 257 14-3-3 family AT2G42590 75.5 4.9e-104 374.4
Csa02g02151 CCT,ECH 3 242 14-3-3 family AT2G42590 77.5 1.9e-103 372.5
Csa06g02080 . 6 253 14-3-3 family AT2G42590 74.6 4.6e-102 367.9
Csa03g04446 CCT,ECH 3 240 14-3-3 family AT2G42590 75.6 2.1e-99 359.0
Csa04g00880 . 8 248 14-3-3 family AT2G42590 73.0 9.6e-92 333.6
Csa02g02163 CCT 8 248 14-3-3 family AT2G42590 70.1 8.1e-91 330.5
Csa03g04457 CCT 8 245 14-3-3 family AT2G42590 70.2 9.9e-89 323.6
Csa03g04481 . 11 248 14-3-3 family AT2G42590 65.1 2.4e-82 302.4
Csa02g02225 . 11 248 14-3-3 family AT2G42590 64.7 2.0e-81 299.3
Csa02g02151 CCT,ECH 1 241 14-3-3 family AT1G22300 79.7 5.8e-104 374.0
Csa07g00466 . 6 242 14-3-3 family AT1G22300 78.1 6.4e-103 370.5
Csa05g02506 . 5 244 14-3-3 family AT1G22300 77.5 3.2e-102 368.2
Csa06g02080 . 5 244 14-3-3 family AT1G22300 76.3 3.5e-101 364.8
Csa03g04446 CCT,ECH 1 240 14-3-3 family AT1G22300 75.8 4.0e-97 351.3
Csa04g00880 . 5 246 14-3-3 family AT1G22300 70.7 3.3e-91 331.6
Csa02g02163 CCT 8 246 14-3-3 family AT1G22300 70.3 4.0e-89 324.7
Csa03g04457 CCT 8 245 14-3-3 family AT1G22300 69.7 2.6e-88 322.0
Csa03g04481 . 11 248 14-3-3 family AT1G22300 65.1 2.6e-80 295.4
Csa02g02225 . 11 248 14-3-3 family AT1G22300 64.7 1.7e-79 292.7
Csa02g02151 CCT,ECH 1 245 14-3-3 family AT1G34760 81.2 1.1e-105 379.8
Csa07g00466 . 6 246 14-3-3 family AT1G34760 80.5 4.0e-105 377.9
Csa05g02506 . 5 245 14-3-3 family AT1G34760 81.3 6.9e-105 377.1
Csa06g02080 . 5 247 14-3-3 family AT1G34760 79.4 1.3e-103 372.9
Csa03g04446 CCT,ECH 1 243 14-3-3 family AT1G34760 76.5 1.4e-97 352.8
Csa04g00880 . 5 250 14-3-3 family AT1G34760 71.1 1.1e-89 326.6
Csa02g02163 CCT 8 245 14-3-3 family AT1G34760 72.3 4.1e-89 324.7
Csa03g04457 CCT 8 249 14-3-3 family AT1G34760 70.2 2.0e-88 322.4
Csa03g04481 . 11 247 14-3-3 family AT1G34760 63.7 2.9e-79 292.0
Csa02g02225 . 11 247 14-3-3 family AT1G34760 64.1 4.2e-78 288.1
Csa05g02506 . 2 263 14-3-3 family AT1G26480 84.7 5.2e-119 424.1
Csa06g02080 . 2 254 14-3-3 family AT1G26480 85.8 2.6e-118 421.8
Csa07g00466 . 3 242 14-3-3 family AT1G26480 80.0 4.6e-107 384.4
Csa02g02151 CCT,ECH 2 249 14-3-3 family AT1G26480 76.6 3.6e-104 374.8
Csa03g04446 CCT,ECH 3 244 14-3-3 family AT1G26480 75.6 6.7e-98 354.0
Csa02g02163 CCT 8 260 14-3-3 family AT1G26480 72.0 3.8e-93 338.2
Csa03g04457 CCT 8 247 14-3-3 family AT1G26480 73.8 4.2e-92 334.7
Csa04g00880 . 2 256 14-3-3 family AT1G26480 71.6 9.3e-92 333.6
Csa03g04481 . 11 244 14-3-3 family AT1G26480 67.1 6.7e-82 300.8
Csa02g02225 . 11 244 14-3-3 family AT1G26480 66.2 1.3e-80 296.6
Csa05g02506 . 5 237 14-3-3 family AT1G78220 52.6 1.5e-64 243.0
Csa02g02151 CCT,ECH 1 234 14-3-3 family AT1G78220 51.1 2.9e-63 238.8
Csa07g00466 . 6 236 14-3-3 family AT1G78220 50.9 3.7e-63 238.4
Csa06g02080 . 5 237 14-3-3 family AT1G78220 50.9 4.9e-63 238.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000486 6 4 5 6 5 2 5 3 3 3 3 3 6 3 2 6 3 6 6 3 3 3 3 3 3 3 3 6 4 0 114
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00880 Csa_Chr04 FPKM 2.650256 2.884196 3.9975 4.331066 0.9883 0.630949 0.933779 0.0 0.0 0.071733