Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00880 ATGTCGCCTGCTGATTCTTCACGGGAGGAAAATGTTTACATGGCCAAGTTGGCAGAACAGGCCGAACGATATGAGGAAATGGTAGAGTTCATGGAGAAAGTTGCCAAGACTGTGGATGTCGAGGAGCTGACCGTTGAGGAGAGGAATCTCCTCTCCGTTGCTTACAAGAATGTCATTGGGGCTCGGAGGGCTTCATGGAGGATTATTTCTTCCATTGAGCAGAAGGAAGAGAGTCGGGGAAATGAGGACCACGTTTCAATTATCAAGGATTACCGTGGCAAAATTGAGACTGAACTGAGCAAGATCTGTGATGGAATTTTGAGCCTCCTTGAGTCTCATCTCATCCCATCAGCCTCATCTGCTGAGTCAAAGGTGTTTTATCTCAAAATGAAAGGTGATTACCACAGGTACCTGGCTGAGTTTAAGACTGGAGCTGAAAGGAAAGAGGCAGCTGAGAGCACATTGTTAGCCTACAAGTCTGCTCAGGATATTGCTCTCGCGGAATTAGCCCCTACTCATCCAATTAGGCTAGGTCTTGCTCTTAACTTCTCAGTGTTTTATTATGAGATCCTTAATTCGCCAGACCGAGCTTGCAATTTGGCAAAGCAGGCTTTTGACGAAGCAATTTCTGAGCTTGACACATTGGGTGAAGAATCATACAAGGATAGCACCTTGATCATGCAACTCCTCCGAGACAACTTGACTCTTTGGACTTCTGATATTGGGGATGAAGCTGGCGATGAGATTAAGGAAGCATCAAAACGTGAATCAGGGGAGGGACATGGACAGTAG 792 46.09 MSPADSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSIIKDYRGKIETELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDIGDEAGDEIKEASKRESGEGHGQ* 264
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 6317654 6319278 + CsaV3_4G008800.1 Csa04g00880 526490
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00880 263 PIRSF 14-3-3 3 250 IPR000308 -
Csa04g00880 263 PANTHER 14-3-3 PROTEIN 5 257 IPR000308 -
Csa04g00880 263 Pfam 14-3-3 protein 14 238 IPR023410 -
Csa04g00880 263 Gene3D - 2 251 IPR036815 -
Csa04g00880 263 Coils Coil 14 34 - -
Csa04g00880 263 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Csa04g00880 263 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Csa04g00880 263 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Csa04g00880 263 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Csa04g00880 263 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Csa04g00880 263 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Csa04g00880 263 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Csa04g00880 263 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Csa04g00880 263 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Csa04g00880 263 SMART 1433_4 8 251 IPR023410 -
Csa04g00880 263 PANTHER 14-3-3-LIKE PROTEIN GF14-F 5 257 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02151 Csa-Chr2:19444483 Csa04g00880 Csa-Chr4:6317654 8.82E-127 dispersed
Csa03g04457 Csa-Chr3:38853484 Csa04g00880 Csa-Chr4:6317654 2.08E-159 dispersed
Csa03g04481 Csa-Chr3:39056155 Csa04g00880 Csa-Chr4:6317654 1.35E-136 dispersed
Csa04g00880 Csa-Chr4:6317654 Csa05g02506 Csa-Chr5:26677086 1.68E-130 dispersed
Csa04g00880 Csa-Chr4:6317654 Csa02g02163 Csa-Chr2:19525778 7.24E-164 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00880 K06630 - csv:101222068 511.916