Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g00880 | ATGTCGCCTGCTGATTCTTCACGGGAGGAAAATGTTTACATGGCCAAGTTGGCAGAACAGGCCGAACGATATGAGGAAATGGTAGAGTTCATGGAGAAAGTTGCCAAGACTGTGGATGTCGAGGAGCTGACCGTTGAGGAGAGGAATCTCCTCTCCGTTGCTTACAAGAATGTCATTGGGGCTCGGAGGGCTTCATGGAGGATTATTTCTTCCATTGAGCAGAAGGAAGAGAGTCGGGGAAATGAGGACCACGTTTCAATTATCAAGGATTACCGTGGCAAAATTGAGACTGAACTGAGCAAGATCTGTGATGGAATTTTGAGCCTCCTTGAGTCTCATCTCATCCCATCAGCCTCATCTGCTGAGTCAAAGGTGTTTTATCTCAAAATGAAAGGTGATTACCACAGGTACCTGGCTGAGTTTAAGACTGGAGCTGAAAGGAAAGAGGCAGCTGAGAGCACATTGTTAGCCTACAAGTCTGCTCAGGATATTGCTCTCGCGGAATTAGCCCCTACTCATCCAATTAGGCTAGGTCTTGCTCTTAACTTCTCAGTGTTTTATTATGAGATCCTTAATTCGCCAGACCGAGCTTGCAATTTGGCAAAGCAGGCTTTTGACGAAGCAATTTCTGAGCTTGACACATTGGGTGAAGAATCATACAAGGATAGCACCTTGATCATGCAACTCCTCCGAGACAACTTGACTCTTTGGACTTCTGATATTGGGGATGAAGCTGGCGATGAGATTAAGGAAGCATCAAAACGTGAATCAGGGGAGGGACATGGACAGTAG | 792 | 46.09 | MSPADSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSIIKDYRGKIETELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDIGDEAGDEIKEASKRESGEGHGQ* | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6317654 | 6319278 | + | CsaV3_4G008800.1 | Csa04g00880 | 526490 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g00880 | 263 | PIRSF | 14-3-3 | 3 | 250 | IPR000308 | - | |
Csa04g00880 | 263 | PANTHER | 14-3-3 PROTEIN | 5 | 257 | IPR000308 | - | |
Csa04g00880 | 263 | Pfam | 14-3-3 protein | 14 | 238 | IPR023410 | - | |
Csa04g00880 | 263 | Gene3D | - | 2 | 251 | IPR036815 | - | |
Csa04g00880 | 263 | Coils | Coil | 14 | 34 | - | - | |
Csa04g00880 | 263 | ProSitePatterns | 14-3-3 proteins signature 1. | 48 | 58 | IPR023409 | - | |
Csa04g00880 | 263 | SUPERFAMILY | 14-3-3 protein | 7 | 240 | IPR036815 | - | |
Csa04g00880 | 263 | ProSitePatterns | 14-3-3 proteins signature 2. | 220 | 239 | IPR023409 | - | |
Csa04g00880 | 263 | PRINTS | 14-3-3 protein zeta signature | 42 | 71 | IPR000308 | - | |
Csa04g00880 | 263 | PRINTS | 14-3-3 protein zeta signature | 91 | 115 | IPR000308 | - | |
Csa04g00880 | 263 | PRINTS | 14-3-3 protein zeta signature | 122 | 144 | IPR000308 | - | |
Csa04g00880 | 263 | PRINTS | 14-3-3 protein zeta signature | 157 | 183 | IPR000308 | - | |
Csa04g00880 | 263 | PRINTS | 14-3-3 protein zeta signature | 184 | 210 | IPR000308 | - | |
Csa04g00880 | 263 | PRINTS | 14-3-3 protein zeta signature | 211 | 240 | IPR000308 | - | |
Csa04g00880 | 263 | SMART | 1433_4 | 8 | 251 | IPR023410 | - | |
Csa04g00880 | 263 | PANTHER | 14-3-3-LIKE PROTEIN GF14-F | 5 | 257 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02151 | Csa-Chr2:19444483 | Csa04g00880 | Csa-Chr4:6317654 | 8.82E-127 | dispersed | |
Csa03g04457 | Csa-Chr3:38853484 | Csa04g00880 | Csa-Chr4:6317654 | 2.08E-159 | dispersed | |
Csa03g04481 | Csa-Chr3:39056155 | Csa04g00880 | Csa-Chr4:6317654 | 1.35E-136 | dispersed | |
Csa04g00880 | Csa-Chr4:6317654 | Csa05g02506 | Csa-Chr5:26677086 | 1.68E-130 | dispersed | |
Csa04g00880 | Csa-Chr4:6317654 | Csa02g02163 | Csa-Chr2:19525778 | 7.24E-164 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g00880 | K06630 | - | csv:101222068 | 511.916 |