Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00913 ATGGGTTCCTCTTCCTCTTCTTTTTCAGTCATCAAATGGTTTTCTCTTACTAGACCCAAATCTCCAATTCTTCTCTCCAAGCTCTTTTTGCTGCTCTGCATCCTCTTCTTCTTTCAGACTCATGTTGTTTACGGGGATTCCGACAAATCCGTGCTTCTTCAGTTCAAAAATGCTCTTTCCGACCCATCTGCTTTGCTTTCCTCCTGGATTCCCACTGATTCTAATTACTGCTTATGGTTTGGTGTTTCTTGCGACTTCAATTCACGGGTTGTCTCCCTCAACATTTCTGGGAATGGTGGTGTTTCAGGTAATTTTAATTCTTTTTCCTGTTCCGAGTCTTCTAAATTCCCTCTTTATGGACTTGGAATCAGAAGGGGCTGTGTGGGTAATAGAGGTTCACTCATTGGGAAGCTTCCACCCGTGATTGGGAACCTCACTCACCTCAGGGTTTTGTCTCTTCCGTTTCATGGTTTTCAAGGTGAGCTTCCTGGTGAAATCTTTGGATTGGAGAACCTTGAGGTTCTTGATCTGGAAGGGAATTCTGTAACTGGGCTGCTTCGTAATGATTTTTCCAGGTTGAGCAACTTGCGTGTTCTTAATCTTGCATTCAATAGGGTTACTGGTGAGATTCCTAGCTCGCTTTTGGGTTGTGCGAGTTTAGAGATCTTGAATTTAGCTGGGAATCAGTTGAATGGGACAATTCCAGAGTTTGTTGGTCAGATGAGAGGGGTCTACTTGTCTTTCAATTTTTTAACAGGATCCATTCCGAGTGAGCTTGGGAATAACTGTGGAAAGCTTGAGCATCTCGACCTGTCTGGTAATTTTTTGGTCAGTGGGATTCCAAGCAATCTGGGAAATTGCACTCAATTGCAGACATTGTTGCTATATTCTAATATGCTGGAAGAGGCCATTCCAGCTGGAATTGGTAAGTTGCAGAAGCTGGAAGTGCTTGATCTTTCAAGGAATAGTCTCAGTGGTCCGATACCCGTCGAGCTGGGAAATTGCTCGCAGTTGTCTGTCCTGGTGCTCTCGAATCTCTTTGATCCAATTCCCAAGATCAACTACACAGGCGATGACTCTCCAACTGAGGAACTTAGTGATGATAGTTTTAACTATTTTGCGGGTGGTATACCTGAGACAATAACAACCCTTCCAAAGCTGAGAATATTGTGGGCCCCTAGTGCAAACCTCAACGGCAGATTCCCTTCTCAATGGGGTCAGTGTGAAAGCTTGGAGATGATCAATTTAGCTGGTAATTACCTTTTTGGGGAGCTTCCCAGTGGGTTTACCGGCTGCAAAAAGCTTCAAGTCCTTGATTTAAGCTCAAACCGGCTTTCTGGAGAACTTAATAAAAACCTACCAGTTCCTTACATGACTCTGTTTGATCTTAGCCATAACCAATTTTTTGGCGAGATTCCTTCGTTCTGTGGCAATGAATGCTCACAGGTGAAGTTCGGTTTGAATGGATATGTGGATTTTAACGATGCCTCGTCCCGGTATCTTTCCTTTTTTGCCACTATTATTCGAGATGCATCCCCTTTTGAATTTGTTGGAAATGGTGATCTGATAATACATAACTTTGGGGACAATAACTTTACTGGAAATCTTCTGTCGTTGCCATTTCCACGTGAAAAACTGGGTAGTAAAACTGTTTATGCTTATCTTGTGGGTGGGAATAAGCTGACTGGACCATTTCCAGATAGTTTGTTTGAGAAATGCGACAATTTGGGGGGATTGATGTTTAATATTAGCAGCAATAAAATATCTGGCCCATTTTCTGTGACAATTGGTAAGAAGTGTGGTTCTCTCAAATTCTTGGATGTATCTGGTAATCAGATGATTGGGCAGGTACCTGCTAGCTTTGGAGAGCTATTATCTCTGAATCACCTGAACCTAAGTCGGAACAAGTTTCAGTATCAAATACCTACTTCTCTCGGACAGATGGCTAATTTGAAGTACCTTTGTTTGGCTGGCAATAACTTTAATGGTTCTATACCTCCAGCCTTGGGAAAGTTGCAGTCTTTGGAGTTGCTGGATCTTTCGTATAACGATCTTTCAGGTGAAATTCCAATGGATCTTGTTAACTTGAGAGGCCTAAAAGTTCTGCTGCTCAACAATAATTCACTCTCTGGACAGGTTCCCTCTGGTTTAGCTAATGTTACCACACTCTCTGCATTTAATGTGTCATTCAATAACTTGTCTGGTTCCCTGCCATCAAATAACAACATGATTAAATGTAGTGGTGCAATTGGAAACCCTTACCTGCGCCCGTGCCATATGTATTCTTTGGCTGTGCCTTCATCTGAAATGCAAGGTTCAGTTGGTGACCCAAGTGGTTTTGCAGCTTCACCGTCGGGTGTTGCACCCCAAACAAGTGGAGGTGGCAGCTTCAATTCCATTGAGATAGCATCCATCACCTCTGCCTCTGCCATTGTTTCTGTTCTTATTGCTTTGATTATCCTATTTCTATATACACGAAAGTGGAACTCGAGATCTAAAGTTCTTGGGTCAATGAGAAAGGAAGTGACGGTTTTTACTGATATTGGGGTTTCCCTGACTTTTGAGAATGTGGTGCGTGCTACAAGTAATTTCAATGCAAGTAACTGCATTGGCAGTGGAGGGTTTGGGGCAACTTACAAGGCAGAGATCTCGTCAGGAGTGCTGGTTGCAATAAAACGACTTGCTGTAGGTCGATTTCAAGGTGTCCAACAGTTTGATGCAGAAATTAAAACCCTTGGAAGGCTGCGCCATCCAAACCTTGTCACCTTAATTGGTTACCATGCCAGTGAAACCGAGATGTTCCTGATATATAATTATTTGCCAGGAGGTAATTTGGAAAAATTCATCCAGGAGAGATCTACAAGAGCTGTTGATTGGAGAATTCTTCACAAGATTGCACTTGACATAGCCCGTGCGCTTGCGTATCTTCACGATCAGTGTGTACCACGAGTCCTTCACCGCGATGTGAAACCGAGTAATATACTATTAGATGACGATTTCAATGCTTATCTCTCTGATTTTGGTTTGGCCCGGCTTCTTGGGACTTCTGAAACCCATGCTACCACCGGGGTGGCTGGAACTTTTGGCTATGTTGCTCCTGAATATGCCATGACTTGCCGTGTCTCTGATAAAGCAGATGTGTATAGCTACGGCGTGGTGCTTCTCGAGCTACTCTCAGACAAAAAAGCACTAGATCCCTCGTTTTCTTCATATGGTAATGGTTTTAACATAGTAGCTTGGGCATGTATGCTGCTTCGGCAGGGGCGTGCCAAGGAATTCTTCACGGCAGGGTTGTGGGAGGTAGGCCCCCATGATGATTTGGTTGAAGTATTACATTTAGCAGTTGTTTGTACAGTTGACTCTTTGTCGACTAGGCCGACGATGAAGCAAGTTGTACGACGGCTTAAGCAGCTTCAACCACCATCATGTTAG 3432 43.44 MGSSSSSFSVIKWFSLTRPKSPILLSKLFLLLCILFFFQTHVVYGDSDKSVLLQFKNALSDPSALLSSWIPTDSNYCLWFGVSCDFNSRVVSLNISGNGGVSGNFNSFSCSESSKFPLYGLGIRRGCVGNRGSLIGKLPPVIGNLTHLRVLSLPFHGFQGELPGEIFGLENLEVLDLEGNSVTGLLRNDFSRLSNLRVLNLAFNRVTGEIPSSLLGCASLEILNLAGNQLNGTIPEFVGQMRGVYLSFNFLTGSIPSELGNNCGKLEHLDLSGNFLVSGIPSNLGNCTQLQTLLLYSNMLEEAIPAGIGKLQKLEVLDLSRNSLSGPIPVELGNCSQLSVLVLSNLFDPIPKINYTGDDSPTEELSDDSFNYFAGGIPETITTLPKLRILWAPSANLNGRFPSQWGQCESLEMINLAGNYLFGELPSGFTGCKKLQVLDLSSNRLSGELNKNLPVPYMTLFDLSHNQFFGEIPSFCGNECSQVKFGLNGYVDFNDASSRYLSFFATIIRDASPFEFVGNGDLIIHNFGDNNFTGNLLSLPFPREKLGSKTVYAYLVGGNKLTGPFPDSLFEKCDNLGGLMFNISSNKISGPFSVTIGKKCGSLKFLDVSGNQMIGQVPASFGELLSLNHLNLSRNKFQYQIPTSLGQMANLKYLCLAGNNFNGSIPPALGKLQSLELLDLSYNDLSGEIPMDLVNLRGLKVLLLNNNSLSGQVPSGLANVTTLSAFNVSFNNLSGSLPSNNNMIKCSGAIGNPYLRPCHMYSLAVPSSEMQGSVGDPSGFAASPSGVAPQTSGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVLGSMRKEVTVFTDIGVSLTFENVVRATSNFNASNCIGSGGFGATYKAEISSGVLVAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTAGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC* 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6672460 6676960 - CsaV3_4G009130.1 Csa04g00913 526523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00913 1143 Gene3D Ribonuclease Inhibitor 45 240 IPR032675 -
Csa04g00913 1143 Pfam Leucine Rich Repeat 313 335 IPR001611 GO:0005515
Csa04g00913 1143 Pfam Leucine Rich Repeat 265 287 IPR001611 GO:0005515
Csa04g00913 1143 ProSitePatterns Protein kinases ATP-binding region signature. 870 892 IPR017441 GO:0005524
Csa04g00913 1143 Gene3D Phosphorylase Kinase; domain 1 826 939 - -
Csa04g00913 1143 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Csa04g00913 1143 SUPERFAMILY Protein kinase-like (PK-like) 849 1135 IPR011009 -
Csa04g00913 1143 SUPERFAMILY L domain-like 510 759 - -
Csa04g00913 1143 ProSiteProfiles Protein kinase domain profile. 864 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00913 1143 SUPERFAMILY RNI-like 134 475 - -
Csa04g00913 1143 SMART serkin_6 864 1142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00913 1143 Gene3D Ribonuclease Inhibitor 367 485 IPR032675 -
Csa04g00913 1143 PRINTS Leucine-rich repeat signature 435 448 - -
Csa04g00913 1143 PRINTS Leucine-rich repeat signature 672 685 - -
Csa04g00913 1143 ProSitePatterns Serine/Threonine protein kinases active-site signature. 984 996 IPR008271 GO:0004672|GO:0006468
Csa04g00913 1143 Pfam Leucine rich repeat 171 230 IPR001611 GO:0005515
Csa04g00913 1143 Pfam Protein kinase domain 867 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00913 1143 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 24 1142 - -
Csa04g00913 1143 CDD STKc_IRAK 870 1138 - -
Csa04g00913 1143 Gene3D Transferase(Phosphotransferase) domain 1 940 1140 - -
Csa04g00913 1143 Pfam Leucine Rich repeat 432 448 IPR001611 GO:0005515
Csa04g00913 1143 SMART LRR_typ_2 193 217 IPR003591 -
Csa04g00913 1143 SMART LRR_typ_2 311 335 IPR003591 -
Csa04g00913 1143 SMART LRR_typ_2 218 241 IPR003591 -
Csa04g00913 1143 SMART LRR_typ_2 169 192 IPR003591 -
Csa04g00913 1143 SMART LRR_typ_2 696 719 IPR003591 -
Csa04g00913 1143 SMART LRR_typ_2 624 648 IPR003591 -
Csa04g00913 1143 SMART LRR_typ_2 263 287 IPR003591 -
Csa04g00913 1143 Gene3D Ribonuclease Inhibitor 241 366 IPR032675 -
Csa04g00913 1143 Gene3D Ribonuclease Inhibitor 521 761 IPR032675 -
Csa04g00913 1143 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 24 1142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00913 Csa-Chr4:6672460 Csa05g01676 Csa-Chr5:19932472 0 dispersed
Csa04g00913 Csa-Chr4:6672460 Csa01g00130 Csa-Chr1:766752 2.65E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78131 PF00069 Pkinase 9.90E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00913 - - csv:101218045 2183.3