Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00929 ATGGGTACAAGAACACAGCAACCATCCCGGGAAGACGACGATGACGACCTCCCAAGTGGCCCTGGTGCCACCACGATTTCGGGTCAGTCTGTTTCAATGAGTGGCAGTGTGGGTTCTCCTTCGAGTCGCAGCGAGCAAACCATGGCCACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCGGGGTCGCAAGGACCCACTGCTAATGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACATATAACGAGGTTGCAGATGAACTTGTCGCAGAGTTTGCTGATCCTGGCAACAGTGTTGCATCGCCAGATCAGCAGCAACAGTATGACGAAAAAAATATCAGGCGGAGGGTATATGATGCCCTGAATGTCCTCATGGCAATGGATATTATATCAAAGGATAAGAAGGAGATACAATGGAAGGGTCTGCCACGTACCAGCGTGAATGATATTGAAGAACTAAAGGCGGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGTTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAATGAACAGTTATTCAATTCGGAGAATGCCCCCAGTGGTGGCGTGTCTTTGCCTTTCATCCTGGTGCAGACGAGGCCTCATGCCACTGTTGAGATAGAAATTTCAGAAGATATGCAGTTGGTCCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAATTATGTTCTGAAGGCAATGAAATTTTGCAACAGACCTCAATGCGATAATACAGCACAAAATTTTACTCCTGATGGTGGGGAGGGTTCTAGCATGTCGGGCATGTATCAACCACCCCATATCCCTATTCCTTCATTGTCTAACACGCCGGTTAGAACACCAACCTCACCACCACTTCCTGGAATCATAAAAGCTCGCGTCAAACACGAACATTAA 1047 47.66 MGTRTQQPSREDDDDDLPSGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFNSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCNRPQCDNTAQNFTPDGGEGSSMSGMYQPPHIPIPSLSNTPVRTPTSPPLPGIIKARVKHEH* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6907123 6911337 - CsaV3_4G009290.1 Csa04g00929 526539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00929 348 SUPERFAMILY Winged helix DNA-binding domain 95 177 IPR036390 -
Csa04g00929 348 PIRSF Txn_factor_DP 3 348 IPR015648 GO:0005667|GO:0051726
Csa04g00929 348 Gene3D - 88 181 IPR036388 -
Csa04g00929 348 Coils Coil 192 226 - -
Csa04g00929 348 Pfam Transcription factor DP 184 291 IPR014889 -
Csa04g00929 348 Pfam E2F/DP family winged-helix DNA-binding domain 95 176 IPR003316 GO:0005667|GO:0006355
Csa04g00929 348 SMART DP_2 183 346 IPR014889 -
Csa04g00929 348 CDD DP_DD 181 284 IPR014889 -
Csa04g00929 348 PANTHER TRANSCRIPTION FACTOR DP 22 348 - -
Csa04g00929 348 PANTHER TRANSCRIPTION FACTOR DP 22 348 IPR015648 GO:0005667|GO:0051726
Csa04g00929 348 MobiDBLite consensus disorder prediction 22 60 - -
Csa04g00929 348 SUPERFAMILY E2F-DP heterodimerization region 183 295 IPR037241 -
Csa04g00929 348 MobiDBLite consensus disorder prediction 1 95 - -
Csa04g00929 348 SMART E2F_TDP_2 92 176 IPR003316 GO:0005667|GO:0006355
Csa04g00929 348 Gene3D Transcription factor DP 182 304 IPR038168 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31534 PF08781 DP 2.70E-41 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00929 K04683 - csv:101216863 676.781