Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00929 ATGGGTACAAGAACACAGCAACCATCCCGGGAAGACGACGATGACGACCTCCCAAGTGGCCCTGGTGCCACCACGATTTCGGGTCAGTCTGTTTCAATGAGTGGCAGTGTGGGTTCTCCTTCGAGTCGCAGCGAGCAAACCATGGCCACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCGGGGTCGCAAGGACCCACTGCTAATGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACATATAACGAGGTTGCAGATGAACTTGTCGCAGAGTTTGCTGATCCTGGCAACAGTGTTGCATCGCCAGATCAGCAGCAACAGTATGACGAAAAAAATATCAGGCGGAGGGTATATGATGCCCTGAATGTCCTCATGGCAATGGATATTATATCAAAGGATAAGAAGGAGATACAATGGAAGGGTCTGCCACGTACCAGCGTGAATGATATTGAAGAACTAAAGGCGGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGTTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAATGAACAGTTATTCAATTCGGAGAATGCCCCCAGTGGTGGCGTGTCTTTGCCTTTCATCCTGGTGCAGACGAGGCCTCATGCCACTGTTGAGATAGAAATTTCAGAAGATATGCAGTTGGTCCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAATTATGTTCTGAAGGCAATGAAATTTTGCAACAGACCTCAATGCGATAATACAGCACAAAATTTTACTCCTGATGGTGGGGAGGGTTCTAGCATGTCGGGCATGTATCAACCACCCCATATCCCTATTCCTTCATTGTCTAACACGCCGGTTAGAACACCAACCTCACCACCACTTCCTGGAATCATAAAAGCTCGCGTCAAACACGAACATTAA 1047 47.66 MGTRTQQPSREDDDDDLPSGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFNSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCNRPQCDNTAQNFTPDGGEGSSMSGMYQPPHIPIPSLSNTPVRTPTSPPLPGIIKARVKHEH* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6907123 6911337 - CsaV3_4G009290.1 Csa04g00929 526539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00929 348 SUPERFAMILY Winged helix DNA-binding domain 95 177 IPR036390 -
Csa04g00929 348 PIRSF Txn_factor_DP 3 348 IPR015648 GO:0005667|GO:0051726
Csa04g00929 348 Gene3D - 88 181 IPR036388 -
Csa04g00929 348 Coils Coil 192 226 - -
Csa04g00929 348 Pfam Transcription factor DP 184 291 IPR014889 -
Csa04g00929 348 Pfam E2F/DP family winged-helix DNA-binding domain 95 176 IPR003316 GO:0005667|GO:0006355
Csa04g00929 348 SMART DP_2 183 346 IPR014889 -
Csa04g00929 348 CDD DP_DD 181 284 IPR014889 -
Csa04g00929 348 PANTHER TRANSCRIPTION FACTOR DP 22 348 - -
Csa04g00929 348 PANTHER TRANSCRIPTION FACTOR DP 22 348 IPR015648 GO:0005667|GO:0051726
Csa04g00929 348 MobiDBLite consensus disorder prediction 22 60 - -
Csa04g00929 348 SUPERFAMILY E2F-DP heterodimerization region 183 295 IPR037241 -
Csa04g00929 348 MobiDBLite consensus disorder prediction 1 95 - -
Csa04g00929 348 SMART E2F_TDP_2 92 176 IPR003316 GO:0005667|GO:0006355
Csa04g00929 348 Gene3D Transcription factor DP 182 304 IPR038168 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00929 K04683 TFDP1; transcription factor Dp-1 - csv:101216863 676.781
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00820 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 8.4e-105 377.5
Csa04g00929 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-60 230.3
Csa06g02465 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 2.7e-121 432.6
Csa06g02714 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.1 4.0e-117 418.7
Csa06g02465 . 20 434 E2F-DP Transcription Factor Family AT5G22220 58.3 4.0e-114 408.7
Csa02g02126 . 150 404 E2F-DP Transcription Factor Family AT1G47870 54.3 5.2e-67 251.9
Csa04g00929 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-60 230.3
Csa06g02465 . 20 434 E2F-DP Transcription Factor Family AT5G22220 58.3 4.0e-114 408.7
Csa06g02465 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 2.7e-121 432.6
Csa06g02714 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.1 4.0e-117 418.7
Csa02g02126 . 150 404 E2F-DP Transcription Factor Family AT1G47870 54.3 5.2e-67 251.9
Csa01g00820 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 8.4e-105 377.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31534 PF08781 DP 2.70E-41 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g00929 Csa_Chr04 FPKM 5.7259 5.264214 1.267732 1.751768 1.986125 1.580036 1.451514 0.0 0.109894 0.0