Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00931 ATGTCGGTGATGTTCAGTTCTTCGTCCTCTTCTCTGTGGTTCATTTTCTGGCTGGGTTTTGTTTCCTTGCTCTCTGCTAATCCTGAAGGTGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTATTACAGAGTTGGGATCCTACTCTTGTTAATCCTTGCACATGGTTCCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGACCTTGGAAATGCCAATCTATCTGGCACGTTGGTTCCACAACTTGGCGATCTTCATAATTTGCAATATTTGGAGCTTTACAGTAACAATATTAATGGAGAAATTCCAATGGAGATTGGGTTTTTGACCAACCTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCACATACCATCCACACTTGGCGGGCTTCAAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTATCGGGAACCATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTTTCATACAACAAGCTAACTGGAGATATCCCGGTCAATGGTTCATTTTCTCTTTTTACCCCTATCAGTTTTGTTCATAATGACCTTAATGAATCTACTGTGCGTACTCCACCACCTCCTCTACCTTCTTCACCAAGCCCCATATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTCTTTGCTGCTCCTGCTGTTGCTGTTGCTTTGTGGCGTCGGAAGAAACCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAGAGATTCTCTCTTCGTGAACTACAAGTTGCAACAGATCATTTTAGCAACAAACATATTCTGGGTAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGGTTGGCTGATGGATCTCTAGTGGCAGTGAAAAGACTCAAAGAGGAGCGTTCACAGGGTGGGGAGCTGCAATTCCAAACAGAAGTGGAGATGATAAGCATGGCTGTGCATCGTAATCTGCTCCGCCTGCGTGGCTTTTGTATGACACCTACTGAGCGGTTGTTGGTCTATCCATTTATGGTTAACGGAAGTGTAGCATCATGTTTGAGAGAACGTCCAGACGCACAACCTCCGCTTAATTGGTTGAATCGAAAACGTATTGCTTTGGGAGCGGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATCATTCATCGTGATGTGAAAGCTGCAAACATTTTACTTGACGAGGAGTATGAAGCTGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCAGTACGTGGAACAATTGGCCATATAGCTCCTGAATACCTTTCGACGGGAAAATCTTCTGAAAAGACTGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCAGATCTTGCGGGGAAATATCCCGATGATGAAGTCGAGCAGCTTATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACAGAACGGCCTAAGATGTCAGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCATCAAGATCTAAGCCGCAATCCCCACCCAAGTACGACTTGGATTCTTGACTCTACTGCTGAAATTCCTCCTGATGAATTGTCTGGTCCAAGATGA 1842 44.41 MSVMFSSSSSSLWFIFWLGFVSLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGDLHNLQYLELYSNNINGEIPMEIGFLTNLVSLDLYLNNLTGHIPSTLGGLQKLRFLRLNNNSLSGTIPMSLTNVKSLQVLDLSYNKLTGDIPVNGSFSLFTPISFVHNDLNESTVRTPPPPLPSSPSPISGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERPDAQPPLNWLNRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDLSRNPHPSTTWILDSTAEIPPDELSGPR* 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6948285 6957658 + CsaV3_4G009310.1 Csa04g00931 526541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00931 613 SUPERFAMILY L domain-like 28 202 - -
Csa04g00931 613 ProSiteProfiles Protein kinase domain profile. 290 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00931 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Csa04g00931 613 SUPERFAMILY Protein kinase-like (PK-like) 269 565 IPR011009 -
Csa04g00931 613 Gene3D Ribonuclease Inhibitor 26 207 IPR032675 -
Csa04g00931 613 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Csa04g00931 613 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 613 - -
Csa04g00931 613 SMART serkin_6 290 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00931 613 MobiDBLite consensus disorder prediction 580 613 - -
Csa04g00931 613 Pfam Protein kinase domain 291 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g00931 613 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
Csa04g00931 613 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Csa04g00931 613 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Csa04g00931 613 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Csa04g00931 613 PANTHER BNAA08G11770D PROTEIN 9 613 IPR031048 GO:0004675|GO:0005102|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00455 Csa-Chr4:2844273 Csa04g00931 Csa-Chr4:6948285 0 dispersed
Csa04g00931 Csa-Chr4:6948285 Csa06g00289 Csa-Chr6:2107583 0 dispersed
Csa06g00787 Csa-Chr6:6307356 Csa04g00931 Csa-Chr4:6948285 5.80E-61 dispersed
Csa04g00931 Csa-Chr4:6948285 Csa05g02551 Csa-Chr5:26917973 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78132 PF00069 Pkinase 5.00E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00931 K13416 - csv:101216389 1174.07