Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00943 ATGGCCGACGCTGCTGAATTTGAGCGCCCCGACCTCAGTTGTGGCCTTGCTTCCATGGATTCCTCCGAGTCCCGTTGGGTTTTCCAGGATGATGACCAGTCCGAGATCGACGACTACGACGACGACGACGACCCCCACGACAATGCTGCCCGTCATTCTATGGATTTGGAATCTGAGGATGAAGATAATGTCGAGCAGAAGTTGATTCGGACTGGCCCACGTATTGATTCTTTCGATGTCGAAGCGCTCGATGTCCCTGGTGCACATAGAAATGAATACGAGGACTTCAGCGTGGGAAAGAAAATTGCTCTTGCTTTTCAGACTCTTGGAGTTGTATTTGGTGATGTTGGGACAAGTCCTTTGTATACCTTCAGTGTCATGTTCAACAAAGTTCCTATTAATGGAGATGAAGATATTATTGGGGCTTTATCCCTAGTTATCTACACCTTAATCTTGATTTCACTAGTCAAGTATGTTCTTGTTGTTCTTCTGGCAAATGATGATGGTGAAGGTGGTACTTTTGCGCTGTACTCTTTGATTTGTAGACATGCCAAGGTCAGTCTACTCCCCAATCAACTGCCTTCGGATACCCGAATATCAAGTTTTAGATTAAAGGTGCCATCAGCCGAATTGGAAAGATCACTAAAAATAAAGGAAAAACTTGAGGCTTCCTTAACCTTAAAGAAGCTTCTTTTGATGCTTGTTCTTGCTGGAACTGCTATGGTAATAGCTGATGGAGTTGTTACACCAGCAATGTCAGTAATGTCGGCTGTTGGTGGACTAAAGATTGGAGTGGATGCAATCAATCAAGATGAGGCTGTGATGATCTCAGTTGCCTGTCTTATAGTTTTGTTCAGTGTTCAGAAGTATGGCACTAGCAAAGTGGGGCTCGCTGTTGGTCCTGCATTATTTATATGGTTTTGTACACTTGCAGGCATTGGGATCTATAACCTTGTCGTATATGATAGCAGTGTATTGAAGGCATTCAATCCTGTTCATATTTACTATTTTTTTAAGAGGAACTCTACCAACGCATGGTATTGCCTTGGAGGTTGTCTTTTATGTGCTACAGGTTCCGAGGCAATGTTCGCAGATCTTTGCTATTTCTCAGTACGGTCAATACAGCTTACGTTTGTGTTTCTCGTCTTGCCTTGTCTTTTCTTGGGTTATTTGGGTCAAGCTGCCTACCTTATATCAAACCAAAATGGAGCTGAGCACGTATTCTTTAATTCTGTTCCCAAAAGTGCCTTTTGGCCAGTTTTTTTCATTGCTAACGTTGCTGCATTGATTGCCAGTCGGGCGATGACTACAGCTACCTTCTCATGTATAAAACAATCAACAGCACTTGGTTGTTTTCCTCGTCTTAAGATTATTCATACATCTAGGAAATTCATGGGGCAGATCTATATCCCGGTGTTGAATTGGTTTTTGTTGGCTGTCTGCCTGGTGGTCGTCTGCTCCATATCTAGCATGTATGAGATTGGAAATGCATATGGTATTGCTGAGCTGGGAGTGATGATGATGACAACTGTCTTGGTTACCATCGTTATGCTTCTTATATGGCAAATAAACATTATCATTGTGATGGGTTTTGCGATGATCTTTCTTGGGATAGAACTGATATTTTTCTCGTCAGTATTATGGGGTGTGGGTGATGGAAGTTGGATCATATTGGTATTCGCAGTAATTATGTTTTTCATTATGTCTATTTGGAACTACGGAAGCAAGCTCAAGTATGAAACTGAAGTAAAGCAAAAGCTGTCAATGGATTTAATGCGGGAACTTGGGTGCAATCTCGGGACAATCAGAGCTCCTGGCATTGGTTTGCTCTATAATGAACTAGTTAAAGGAATACCTGCAATATTTGGCCATTTTCTTACTACTCTTCCTGCGGTTCATTCAATGATCATATTTGTCTGCATCAAATATGTACCGGTTCCTGTTGTGCCTCAGAGTGAGAGATTTCTATTCCGCCGAGTCTGTCCAAAGAGCTATCACATCTTTCGTTGCATTGCCAGGTATGGTTACAAGGATGTTCGAAAAGAAAATCATCAGACGTTTGAGCAGCTCTTAATTGAAAGCCTCGAGAAATTCATCCGTCGAGAAGCACAAGAAAGGTCATTAGAGAGTGATGGAGATGATGACACTGATACCGATGAGACCCGGTGCTCGCGACTTCTTGTGGGTCCGAATGGAAGTGTGTATTCACTTGGGATTCCTCTCCTTGCTGAATTTAACGAGATTACTAGACCCATAACTGAAGTCCTTAACGTACCAGAAGAGGTGCAGGCATTGGAATCCCCAGACCCCTCAATCCCAGATGCAGAGCAATCACTTGAGAGAGAGCTTTCTTTTATACGAAAGGCTAAAGAATCAGGAGTGGTTTACCTTCTTGGTCATGGAGATATTAGAGCAAGAAAGGACTCTTGGTTTATTAAGAAGCTAATCATCAATTACTTCTATGCATTTTTAAGAAAGAACAGCCGAAGAGGTATTGCCAACTTGAGTGTTCCCCACACGCATCTGATGCAGGTTGGCATGACGTACATGGTTTAG 2556 42.53 MADAAEFERPDLSCGLASMDSSESRWVFQDDDQSEIDDYDDDDDPHDNAARHSMDLESEDEDNVEQKLIRTGPRIDSFDVEALDVPGAHRNEYEDFSVGKKIALAFQTLGVVFGDVGTSPLYTFSVMFNKVPINGDEDIIGALSLVIYTLILISLVKYVLVVLLANDDGEGGTFALYSLICRHAKVSLLPNQLPSDTRISSFRLKVPSAELERSLKIKEKLEASLTLKKLLLMLVLAGTAMVIADGVVTPAMSVMSAVGGLKIGVDAINQDEAVMISVACLIVLFSVQKYGTSKVGLAVGPALFIWFCTLAGIGIYNLVVYDSSVLKAFNPVHIYYFFKRNSTNAWYCLGGCLLCATGSEAMFADLCYFSVRSIQLTFVFLVLPCLFLGYLGQAAYLISNQNGAEHVFFNSVPKSAFWPVFFIANVAALIASRAMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVLNWFLLAVCLVVVCSISSMYEIGNAYGIAELGVMMMTTVLVTIVMLLIWQINIIIVMGFAMIFLGIELIFFSSVLWGVGDGSWIILVFAVIMFFIMSIWNYGSKLKYETEVKQKLSMDLMRELGCNLGTIRAPGIGLLYNELVKGIPAIFGHFLTTLPAVHSMIIFVCIKYVPVPVVPQSERFLFRRVCPKSYHIFRCIARYGYKDVRKENHQTFEQLLIESLEKFIRREAQERSLESDGDDDTDTDETRCSRLLVGPNGSVYSLGIPLLAEFNEITRPITEVLNVPEEVQALESPDPSIPDAEQSLERELSFIRKAKESGVVYLLGHGDIRARKDSWFIKKLIINYFYAFLRKNSRRGIANLSVPHTHLMQVGMTYMV* 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7044794 7059150 - CsaV3_4G009430.1 Csa04g00943 526553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00943 851 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 22 850 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa04g00943 851 MobiDBLite consensus disorder prediction 45 63 - -
Csa04g00943 851 Pfam K+ potassium transporter 105 678 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa04g00943 851 MobiDBLite consensus disorder prediction 1 63 - -
Csa04g00943 851 PANTHER POTASSIUM TRANSPORTER 7 22 850 - -
Csa04g00943 851 TIGRFAM kup: potassium uptake protein 104 851 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00943 Csa-Chr4:7044794 Csa05g01229 Csa-Chr5:12915450 0 dispersed
Csa04g00943 Csa-Chr4:7044794 Csa03g03914 Csa-Chr3:34316948 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00943 - - csv:101214942 1606.27