Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa04g00946 | ATGGAGGATTATCATGTCGCTCAATTTATTACCGTGCATGGCCGCGAGCTAGGTCTTTTTGCTATATATGATGGACATTTAGGAGACAGCGTGCCCGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGAGGAATTCTGGTCGAATCCTCGTAGCTCTATCTTTAAGGCTTACGAGAAGACAGACCAAGCAATACTCTCACACAGTCCTGACTTAGGAAGAGGTGGATCCACTGCTGTCACTGCAATTTTGATTAACGGTCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGGGCAGTCCTTTCAAGAAAAGGGCAGGAATTGCAAATGTCTGTTGATCACGAGCCAAACACTGAGCGAGAAAGTATTGAGGATAGAGGAGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGGGTGAATGGTCAGCTTGCAGTTTCTCGAGCATTCGGCGACAAGAACCTCAAGACACACTTGCGATCTGATCCTGACATAAGGAATGCCAATGTTGACTCTGACACTGAGCTTCTGATCTTAGCAAGTGATGGTCTATGGAAGGTGATGACAAATCAAGAAGCCGTGGATATAGCAAGAAAAACCAAGGATCCCCATAGAGCAGCAAAGCAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGATGATATCTCAATCATCGTAGTTCGTTTCAAAGGGTAA | 711 | 44.44 | MEDYHVAQFITVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPRSSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSRKGQELQMSVDHEPNTERESIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIRNANVDSDTELLILASDGLWKVMTNQEAVDIARKTKDPHRAAKQLAAEALKRESKDDISIIVVRFKG* | 237 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 7135600 | 7140877 | + | CsaV3_4G009460.1 | Csa04g00946 | 526556 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa04g00946 | 236 | CDD | PP2Cc | 1 | 234 | IPR001932 | - | |
| Csa04g00946 | 236 | SMART | PP2C_SIG_2 | 3 | 234 | IPR001932 | - | |
| Csa04g00946 | 236 | Pfam | Protein phosphatase 2C | 15 | 227 | IPR001932 | - | |
| Csa04g00946 | 236 | Gene3D | - | 1 | 236 | IPR036457 | - | |
| Csa04g00946 | 236 | PANTHER | PHOSPHATASE 2C FAMILY PROTEIN | 1 | 235 | - | - | |
| Csa04g00946 | 236 | SMART | PP2C_4 | 2 | 232 | IPR001932 | - | |
| Csa04g00946 | 236 | MobiDBLite | consensus disorder prediction | 114 | 130 | - | - | |
| Csa04g00946 | 236 | MobiDBLite | consensus disorder prediction | 114 | 134 | - | - | |
| Csa04g00946 | 236 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 235 | IPR015655 | GO:0004722|GO:0006470 | |
| Csa04g00946 | 236 | SUPERFAMILY | PP2C-like | 1 | 235 | IPR036457 | - | |
| Csa04g00946 | 236 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 234 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g04445 | Csa-Chr3:38776312 | Csa04g00946 | Csa-Chr4:7135600 | 3.24E-141 | dispersed | |
| Csa04g00946 | Csa-Chr4:7135600 | Csa04g02331 | Csa-Chr4:23784845 | 2.34E-105 | dispersed | |
| Csa04g00946 | Csa-Chr4:7135600 | Csa03g02203 | Csa-Chr3:19119262 | 3.01E-60 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa04g00946 | K17506 | - | csv:101214223 | 471.085 |