Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g00946 ATGGAGGATTATCATGTCGCTCAATTTATTACCGTGCATGGCCGCGAGCTAGGTCTTTTTGCTATATATGATGGACATTTAGGAGACAGCGTGCCCGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGAGGAATTCTGGTCGAATCCTCGTAGCTCTATCTTTAAGGCTTACGAGAAGACAGACCAAGCAATACTCTCACACAGTCCTGACTTAGGAAGAGGTGGATCCACTGCTGTCACTGCAATTTTGATTAACGGTCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGGGCAGTCCTTTCAAGAAAAGGGCAGGAATTGCAAATGTCTGTTGATCACGAGCCAAACACTGAGCGAGAAAGTATTGAGGATAGAGGAGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGGGTGAATGGTCAGCTTGCAGTTTCTCGAGCATTCGGCGACAAGAACCTCAAGACACACTTGCGATCTGATCCTGACATAAGGAATGCCAATGTTGACTCTGACACTGAGCTTCTGATCTTAGCAAGTGATGGTCTATGGAAGGTGATGACAAATCAAGAAGCCGTGGATATAGCAAGAAAAACCAAGGATCCCCATAGAGCAGCAAAGCAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGATGATATCTCAATCATCGTAGTTCGTTTCAAAGGGTAA 711 44.44 MEDYHVAQFITVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPRSSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSRKGQELQMSVDHEPNTERESIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIRNANVDSDTELLILASDGLWKVMTNQEAVDIARKTKDPHRAAKQLAAEALKRESKDDISIIVVRFKG* 237
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 7135600 7140877 + CsaV3_4G009460.1 Csa04g00946 526556
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa04g00946 236 CDD PP2Cc 1 234 IPR001932 -
Csa04g00946 236 SMART PP2C_SIG_2 3 234 IPR001932 -
Csa04g00946 236 Pfam Protein phosphatase 2C 15 227 IPR001932 -
Csa04g00946 236 Gene3D - 1 236 IPR036457 -
Csa04g00946 236 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 1 235 - -
Csa04g00946 236 SMART PP2C_4 2 232 IPR001932 -
Csa04g00946 236 MobiDBLite consensus disorder prediction 114 130 - -
Csa04g00946 236 MobiDBLite consensus disorder prediction 114 134 - -
Csa04g00946 236 PANTHER PROTEIN PHOSPHATASE 2C 1 235 IPR015655 GO:0004722|GO:0006470
Csa04g00946 236 SUPERFAMILY PP2C-like 1 235 IPR036457 -
Csa04g00946 236 ProSiteProfiles PPM-type phosphatase domain profile. 1 234 IPR001932 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04445 Csa-Chr3:38776312 Csa04g00946 Csa-Chr4:7135600 3.24E-141 dispersed
Csa04g00946 Csa-Chr4:7135600 Csa04g02331 Csa-Chr4:23784845 2.34E-105 dispersed
Csa04g00946 Csa-Chr4:7135600 Csa03g02203 Csa-Chr3:19119262 3.01E-60 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g00946 K17506 - csv:101214223 471.085