Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01008 ATGGGAAGAGGGAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACTTTCTCAAAGCGTAGAGCTGGTTTACTCAAAAAGGCTCATGAGATCTCTGTTCTTTGTGAAGCTGATGTTGCTTTGATTGTTTTCTCCACCAAAGGAAAACTCTTTGAGTACTCTTCTGATTCCAGCATGGAGAAGATCTTAGAGAAATATGAGAGATATTCTTATGCAGAGAGACCGTTGGCCCCAAATGGAGATTCTGAATTACAGACAAGTTGGTGTCAGGAGTATCCAAAACTTACAGCCAGATTGGAAATTGTACAGAAAAACTTAAGGCATTATTTGGGAGAAGATCTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTAGAGCAACAACTTGACACATCACTCAAGCGCATAAGATCTAGAAAGAACCAACTAATGCAAGAATCTATTTCAATATTGCACAAAAAGGAAAAGGACTTGCAAGAGGAGAATAGGCAGCTAGCGAATAAGGTAAAGGAAAATGAGAAGGCTTTGGTTGAACGTGGACAGTGCGATGTTCCAAACTTGGTTCATAATAATCAGCCAATTTTTGGAATGACACCACCAATCCCTTCTTTATCATTTGGAGCGAACTTGAATGGGAGAGGATCAAGAGGATCAGATGAAGATGAAACAAGGCCAACCAGCATCAACAACATCCAAATACCAGCGTGGATGCTTCGCCATCAACCGCATCGTGTCGTCTTCGCTGTTGCAGGGAGGCAGGCGCAAGTGGTTGCCACTGCCCAGCTCACTGGCACCATAATTGTCACAAATAAAAAGGCCATGGGGATGGGGGCAGAAAAAAGAGAAGACAACTACAAACGTTTGGTAGACATTGAAAATGGAGACGCTAAAAATATCGCCATTCTCCGTATTCAACTGCCACTGCGGTTCGTTTCTCCCAACAGACTCCCGATTCCATCCTCTCAATTTTTCCAGGGAGAGTGCAAATTTATCAGGATCATGGCTGAGTCAGTTGGGAGTAGGAACATGGATAAAAAGCTTATACAAATCGATATAAGCTCCGACACGGTTTGCCCATGGTGCTTTGTTGGCAAAAAAAATCTTGACAAAGCAATTTCTGCTTCTCAGGATCAATATGATTTTGAGTTGAATTGGCATCCTTTCCAGCTCAACCCTACTGCACCCAAAGAAGGTGTTGTTAAGACGGAATATTACAGGAGTAAGTTTGGAATTCAATCTGAACAGATGGAAGCTCGGATGGCAGAGGTGTTTAGGGGTCTTGGACTGGATTATGATACTTCTGGGCTGACGGGAAATACTCTAGAAAGCCATAAGCTTATATATTTGGCAGGTCAACAAGGCTTAGGCAAACAACATGATCTTGTGGAGGAGTTATGCCTCGGATACTTCACTCAGGGAAAATACATTGGTGACCGGGATTTTCTTTTGGAATGTGCCAGAAAGGCAGGGGTGGAAGGAGCAGCAGAGTTTCTCGAGACCGCTGATAATGGAGTTAAGGAGGTCAAGGAGGAGCTTGAGAAGTACTCGGGAAAAATTTCAGGAGTTCCCTTTTATGTTATCAATGGGAAGCACAAATTGAGCGGTGCTCAACCCCCTGAGGTTTTTCTAAGAGCTTTTCAAGTGGCAGGGAAGTGA 1668 43.29 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEYSSDSSMEKILEKYERYSYAERPLAPNGDSELQTSWCQEYPKLTARLEIVQKNLRHYLGEDLDPLNLRELQSLEQQLDTSLKRIRSRKNQLMQESISILHKKEKDLQEENRQLANKVKENEKALVERGQCDVPNLVHNNQPIFGMTPPIPSLSFGANLNGRGSRGSDEDETRPTSINNIQIPAWMLRHQPHRVVFAVAGRQAQVVATAQLTGTIIVTNKKAMGMGAEKREDNYKRLVDIENGDAKNIAILRIQLPLRFVSPNRLPIPSSQFFQGECKFIRIMAESVGSRNMDKKLIQIDISSDTVCPWCFVGKKNLDKAISASQDQYDFELNWHPFQLNPTAPKEGVVKTEYYRSKFGIQSEQMEARMAEVFRGLGLDYDTSGLTGNTLESHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDRDFLLECARKAGVEGAAEFLETADNGVKEVKEELEKYSGKISGVPFYVINGKHKLSGAQPPEVFLRAFQVAGK* 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7827623 7843378 - CsaV3_4G010080.1 Csa04g01008 526618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01008 555 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa04g01008 555 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa04g01008 555 CDD DsbA_FrnE 354 551 - -
Csa04g01008 555 Pfam DSBA-like thioredoxin domain 353 550 IPR001853 GO:0016491
Csa04g01008 555 Gene3D Glutaredoxin 351 553 - -
Csa04g01008 555 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Csa04g01008 555 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa04g01008 555 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa04g01008 555 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa04g01008 555 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Csa04g01008 555 Coils Coil 126 150 - -
Csa04g01008 555 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa04g01008 555 Coils Coil 152 182 - -
Csa04g01008 555 MobiDBLite consensus disorder prediction 210 230 - -
Csa04g01008 555 Coils Coil 502 522 - -
Csa04g01008 555 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa04g01008 555 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Csa04g01008 555 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa04g01008 555 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa04g01008 555 SUPERFAMILY Thioredoxin-like 352 551 IPR036249 -
Csa04g01008 555 PANTHER THIOREDOXIN SUPERFAMILY PROTEIN 349 554 - -
Csa04g01008 555 PANTHER GLUTATHIONE S-TRANSFERASE KAPPA 349 554 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00622 Csa-Chr1:3977607 Csa04g01008 Csa-Chr4:7827623 3.92E-84 dispersed
Csa04g01008 Csa-Chr4:7827623 Csa06g02093 Csa-Chr6:18670207 2.70E-78 dispersed
Csa04g01008 Csa-Chr4:7827623 Csa04g01009 Csa-Chr4:7881189 6.54E-54 tandem
Csa06g03905 Csa-Chr6:30881273 Csa04g01008 Csa-Chr4:7827623 2.09E-40 transposed
Csa01g00621 Csa-Chr1:3970082 Csa04g01008 Csa-Chr4:7827623 5.12E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31538 PF01323 DSBA 4.00E-35 CL0172 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01008 - K09264 csv:101218674 486.108