Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01008 | ATGGGAAGAGGGAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACTTTCTCAAAGCGTAGAGCTGGTTTACTCAAAAAGGCTCATGAGATCTCTGTTCTTTGTGAAGCTGATGTTGCTTTGATTGTTTTCTCCACCAAAGGAAAACTCTTTGAGTACTCTTCTGATTCCAGCATGGAGAAGATCTTAGAGAAATATGAGAGATATTCTTATGCAGAGAGACCGTTGGCCCCAAATGGAGATTCTGAATTACAGACAAGTTGGTGTCAGGAGTATCCAAAACTTACAGCCAGATTGGAAATTGTACAGAAAAACTTAAGGCATTATTTGGGAGAAGATCTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTAGAGCAACAACTTGACACATCACTCAAGCGCATAAGATCTAGAAAGAACCAACTAATGCAAGAATCTATTTCAATATTGCACAAAAAGGAAAAGGACTTGCAAGAGGAGAATAGGCAGCTAGCGAATAAGGTAAAGGAAAATGAGAAGGCTTTGGTTGAACGTGGACAGTGCGATGTTCCAAACTTGGTTCATAATAATCAGCCAATTTTTGGAATGACACCACCAATCCCTTCTTTATCATTTGGAGCGAACTTGAATGGGAGAGGATCAAGAGGATCAGATGAAGATGAAACAAGGCCAACCAGCATCAACAACATCCAAATACCAGCGTGGATGCTTCGCCATCAACCGCATCGTGTCGTCTTCGCTGTTGCAGGGAGGCAGGCGCAAGTGGTTGCCACTGCCCAGCTCACTGGCACCATAATTGTCACAAATAAAAAGGCCATGGGGATGGGGGCAGAAAAAAGAGAAGACAACTACAAACGTTTGGTAGACATTGAAAATGGAGACGCTAAAAATATCGCCATTCTCCGTATTCAACTGCCACTGCGGTTCGTTTCTCCCAACAGACTCCCGATTCCATCCTCTCAATTTTTCCAGGGAGAGTGCAAATTTATCAGGATCATGGCTGAGTCAGTTGGGAGTAGGAACATGGATAAAAAGCTTATACAAATCGATATAAGCTCCGACACGGTTTGCCCATGGTGCTTTGTTGGCAAAAAAAATCTTGACAAAGCAATTTCTGCTTCTCAGGATCAATATGATTTTGAGTTGAATTGGCATCCTTTCCAGCTCAACCCTACTGCACCCAAAGAAGGTGTTGTTAAGACGGAATATTACAGGAGTAAGTTTGGAATTCAATCTGAACAGATGGAAGCTCGGATGGCAGAGGTGTTTAGGGGTCTTGGACTGGATTATGATACTTCTGGGCTGACGGGAAATACTCTAGAAAGCCATAAGCTTATATATTTGGCAGGTCAACAAGGCTTAGGCAAACAACATGATCTTGTGGAGGAGTTATGCCTCGGATACTTCACTCAGGGAAAATACATTGGTGACCGGGATTTTCTTTTGGAATGTGCCAGAAAGGCAGGGGTGGAAGGAGCAGCAGAGTTTCTCGAGACCGCTGATAATGGAGTTAAGGAGGTCAAGGAGGAGCTTGAGAAGTACTCGGGAAAAATTTCAGGAGTTCCCTTTTATGTTATCAATGGGAAGCACAAATTGAGCGGTGCTCAACCCCCTGAGGTTTTTCTAAGAGCTTTTCAAGTGGCAGGGAAGTGA | 1668 | 43.29 | MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEYSSDSSMEKILEKYERYSYAERPLAPNGDSELQTSWCQEYPKLTARLEIVQKNLRHYLGEDLDPLNLRELQSLEQQLDTSLKRIRSRKNQLMQESISILHKKEKDLQEENRQLANKVKENEKALVERGQCDVPNLVHNNQPIFGMTPPIPSLSFGANLNGRGSRGSDEDETRPTSINNIQIPAWMLRHQPHRVVFAVAGRQAQVVATAQLTGTIIVTNKKAMGMGAEKREDNYKRLVDIENGDAKNIAILRIQLPLRFVSPNRLPIPSSQFFQGECKFIRIMAESVGSRNMDKKLIQIDISSDTVCPWCFVGKKNLDKAISASQDQYDFELNWHPFQLNPTAPKEGVVKTEYYRSKFGIQSEQMEARMAEVFRGLGLDYDTSGLTGNTLESHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDRDFLLECARKAGVEGAAEFLETADNGVKEVKEELEKYSGKISGVPFYVINGKHKLSGAQPPEVFLRAFQVAGK* | 556 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7827623 | 7843378 | - | CsaV3_4G010080.1 | Csa04g01008 | 526618 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01008 | 555 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01008 | 555 | Pfam | K-box region | 89 | 173 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa04g01008 | 555 | CDD | DsbA_FrnE | 354 | 551 | - | - | |
Csa04g01008 | 555 | Pfam | DSBA-like thioredoxin domain | 353 | 550 | IPR001853 | GO:0016491 | |
Csa04g01008 | 555 | Gene3D | Glutaredoxin | 351 | 553 | - | - | |
Csa04g01008 | 555 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Csa04g01008 | 555 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01008 | 555 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01008 | 555 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01008 | 555 | SUPERFAMILY | SRF-like | 2 | 80 | IPR036879 | GO:0003677|GO:0046983 | |
Csa04g01008 | 555 | Coils | Coil | 126 | 150 | - | - | |
Csa04g01008 | 555 | ProSiteProfiles | K-box domain profile. | 89 | 179 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa04g01008 | 555 | Coils | Coil | 152 | 182 | - | - | |
Csa04g01008 | 555 | MobiDBLite | consensus disorder prediction | 210 | 230 | - | - | |
Csa04g01008 | 555 | Coils | Coil | 502 | 522 | - | - | |
Csa04g01008 | 555 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01008 | 555 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Csa04g01008 | 555 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01008 | 555 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01008 | 555 | SUPERFAMILY | Thioredoxin-like | 352 | 551 | IPR036249 | - | |
Csa04g01008 | 555 | PANTHER | THIOREDOXIN SUPERFAMILY PROTEIN | 349 | 554 | - | - | |
Csa04g01008 | 555 | PANTHER | GLUTATHIONE S-TRANSFERASE KAPPA | 349 | 554 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00622 | Csa-Chr1:3977607 | Csa04g01008 | Csa-Chr4:7827623 | 3.92E-84 | dispersed | |
Csa04g01008 | Csa-Chr4:7827623 | Csa06g02093 | Csa-Chr6:18670207 | 2.70E-78 | dispersed | |
Csa04g01008 | Csa-Chr4:7827623 | Csa04g01009 | Csa-Chr4:7881189 | 6.54E-54 | tandem | |
Csa06g03905 | Csa-Chr6:30881273 | Csa04g01008 | Csa-Chr4:7827623 | 2.09E-40 | transposed | |
Csa01g00621 | Csa-Chr1:3970082 | Csa04g01008 | Csa-Chr4:7827623 | 5.12E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31538 | PF01323 | DSBA | 4.00E-35 | CL0172 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01008 | - | K09264 | csv:101218674 | 486.108 |