Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01009 | ATGGGAAGAGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAAATAAACAGACAAGTAACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCAAATCGTGGCAAGCTCTATGAATTCTGTAGTACTTCCAATATGCTTAAAACGCTGGAGAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTTACAAAACCGGCTAAAGAACTCGAGAGTAGTTATAGAGAGTACTTGAAGCTGAAGTCTAGGTTTGAGTCTCTACAAAGAACTCAGAGAAACCTTCTTGGGGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAGCGTCAGCTTGTGTCTTCTTTGAAGCAAGTTAGGTCTACCAAGACTCAGTACATGCTGGACCAACTATCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACTAACAGAGCTCTGCAAATAAAGCTGGAAGAAATAAGTTCAAGAAATAATATAAGGCTTACATGGGATGGTGGAGATCAAAGCATGTCATATGGTCCACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCACTGGAATGCAACCCCACTTTGCAAATTGGGTACACTTCTGCAGTATCAGACCAAATTACAAGCACTACTACTCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA | 741 | 41.7 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLNSKELEQLERQLVSSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNIRLTWDGGDQSMSYGPQNAQTQGFFQPLECNPTLQIGYTSAVSDQITSTTTPTHAQQVNGFLPGWML* | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7881189 | 7890036 | - | CsaV3_4G010090.1 | Csa04g01009 | 526619 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01009 | 246 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01009 | 246 | Coils | Coil | 150 | 170 | - | - | |
Csa04g01009 | 246 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01009 | 246 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01009 | 246 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01009 | 246 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01009 | 246 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01009 | 246 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 231 | - | - | |
Csa04g01009 | 246 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Csa04g01009 | 246 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa04g01009 | 246 | Pfam | K-box region | 84 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa04g01009 | 246 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Csa04g01009 | 246 | Coils | Coil | 124 | 144 | - | - | |
Csa04g01009 | 246 | PANTHER | DEVELOPMENTAL PROTEIN SEPALLATA 1 | 1 | 231 | - | - | |
Csa04g01009 | 246 | SUPERFAMILY | SRF-like | 2 | 77 | IPR036879 | GO:0003677|GO:0046983 | |
Csa04g01009 | 246 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00621 | Csa-Chr1:3970082 | Csa04g01009 | Csa-Chr4:7881189 | 2.42E-96 | dispersed | |
Csa04g01009 | Csa-Chr4:7881189 | Csa06g00820 | Csa-Chr6:6576874 | 8.03E-111 | dispersed | |
Csa04g01008 | Csa-Chr4:7827623 | Csa04g01009 | Csa-Chr4:7881189 | 6.54E-54 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31539 | PF01486 | K-box | 2.00E-26 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01009 | K09264 | - | csv:101208204 | 486.878 |