Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01009 ATGGGAAGAGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAAATAAACAGACAAGTAACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCAAATCGTGGCAAGCTCTATGAATTCTGTAGTACTTCCAATATGCTTAAAACGCTGGAGAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTTACAAAACCGGCTAAAGAACTCGAGAGTAGTTATAGAGAGTACTTGAAGCTGAAGTCTAGGTTTGAGTCTCTACAAAGAACTCAGAGAAACCTTCTTGGGGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAGCGTCAGCTTGTGTCTTCTTTGAAGCAAGTTAGGTCTACCAAGACTCAGTACATGCTGGACCAACTATCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACTAACAGAGCTCTGCAAATAAAGCTGGAAGAAATAAGTTCAAGAAATAATATAAGGCTTACATGGGATGGTGGAGATCAAAGCATGTCATATGGTCCACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCACTGGAATGCAACCCCACTTTGCAAATTGGGTACACTTCTGCAGTATCAGACCAAATTACAAGCACTACTACTCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA 741 41.7 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLNSKELEQLERQLVSSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNIRLTWDGGDQSMSYGPQNAQTQGFFQPLECNPTLQIGYTSAVSDQITSTTTPTHAQQVNGFLPGWML* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7881189 7890036 - CsaV3_4G010090.1 Csa04g01009 526619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01009 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa04g01009 246 Coils Coil 150 170 - -
Csa04g01009 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa04g01009 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa04g01009 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa04g01009 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa04g01009 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa04g01009 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Csa04g01009 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Csa04g01009 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa04g01009 246 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa04g01009 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Csa04g01009 246 Coils Coil 124 144 - -
Csa04g01009 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 231 - -
Csa04g01009 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Csa04g01009 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00621 Csa-Chr1:3970082 Csa04g01009 Csa-Chr4:7881189 2.42E-96 dispersed
Csa04g01009 Csa-Chr4:7881189 Csa06g00820 Csa-Chr6:6576874 8.03E-111 dispersed
Csa04g01008 Csa-Chr4:7827623 Csa04g01009 Csa-Chr4:7881189 6.54E-54 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31539 PF01486 K-box 2.00E-26 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01009 K09264 - csv:101208204 486.878