Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01017 ATGAGGGTGTTCATTTCAGCTGTCTTCCTTTTTGTCTTTTTTTCTCTTGGAGCTGCCTATGATCCGTTGGATCCAAATGGGAACATTACGATCAAATGGGATATCATGTCTTGGACACCCGATGGCTATGTGGCAGTAGTCACATTGAACAACTTCCAAATGTACCGCCATATAATGAGCCCCGGGTGGACGATGGGGTGGACTTGGGCGAAAAAGGAAGTGATATGGTCGATGGTGGGGTCGCAGACAACGGAGCAAGGTGACTGCTCCAAGTTCAAAGGAAACATTCCTCACTCCTGCAAGAAAAACCCCACTGTTGTAGATTTGATGCCTGGTGTTCCTTACAACCAACAGTTTACAAACTGCTGCAAAGGTGGGGTTGTGGCAGCTTGGGGACAAGACCCTCAAGCTGCTGTTTCAGCCTTTCAGCTTAGTATTGGCCAAGCAGGTACTTCAAACAAGACTGTCAAGCTTCCCAAGAACTTCACTTTGCTCGGTCCTGGCCCCGGATACACTTGTGGCCCTGCAAAAGTTGTGCCTTCCACCACTTTCCTCACACCCGACCGTCGCCGCAAAACTCAAGCTTTGATGACTTGGAATGTGACTTGCACTTACTCTCAGTTTCTAGCAAGAAAGAATCCTAATTGTTGTGTTTCTTTCTCATCTTTCTACAACGATACAATTACATCTTGTCCGTCTTGTGCCTGTGGTTGCCAAAACAAGAGCAATTGTGTACAGAATGATTCTAAGATTCTTAAGCTGGTTGGAATCAATACACCAAGGAAAGACAATGCCCCTTTGCTGCATTGCACACATCACATGTGCCCTGTTCGAGTTCACTGGCACGTAAAGCAAAATTACAAGGAATATTGGCGGGTGAAGATTGCTATCACAAACTTCAACTACCGAATGAACTATTCACTTTGGTCTCTCGTTGTCCAGCACCCAAATCTGAACAATGTAACACAAGTTTTCAGCTTTGACTATAAACCCCTTGTTCCCTATGAATCGATCAATGATACAGGAATGTTTTATGGGATGAAGTTCTATAACGACCTTCTTATGGAAGCGGGGCCATTTGGTAACGTACAATCAGAAGTGTTGCTGCGAAAAGACCAGAATACGTTCACTTTCAAGCAGGGATGGGCATTTCCTCGAAAAGTTTACTTCAATGGCGACGAGTGCATGCTTCCGCCACCCGACACATACCCTTTCCTGCCAAACGCTGCCCAACAAAGGCCAGTTGGCCTCTCATCTTCAATTACTTTGCTGCTGCTCTTGATGCTGCTAGCTATGTGCTGA 1302 45.78 MRVFISAVFLFVFFSLGAAYDPLDPNGNITIKWDIMSWTPDGYVAVVTLNNFQMYRHIMSPGWTMGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNIPHSCKKNPTVVDLMPGVPYNQQFTNCCKGGVVAAWGQDPQAAVSAFQLSIGQAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTTFLTPDRRRKTQALMTWNVTCTYSQFLARKNPNCCVSFSSFYNDTITSCPSCACGCQNKSNCVQNDSKILKLVGINTPRKDNAPLLHCTHHMCPVRVHWHVKQNYKEYWRVKIAITNFNYRMNYSLWSLVVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLRKDQNTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNAAQQRPVGLSSSITLLLLLMLLAMC* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7962730 7965285 + CsaV3_4G010170.1 Csa04g01017 526627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01017 433 PIRSF COBRA 1 433 IPR006918 GO:0010215|GO:0031225
Csa04g01017 433 PANTHER PROTEIN COBRA 7 429 IPR006918 GO:0010215|GO:0031225
Csa04g01017 433 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
Csa04g01017 433 PANTHER COBRA-LIKE PROTEIN 7 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00340 Csa-Chr1:2128397 Csa04g01017 Csa-Chr4:7962730 0 dispersed
Csa03g02318 Csa-Chr3:20725839 Csa04g01017 Csa-Chr4:7962730 2.54E-37 dispersed
Csa04g01017 Csa-Chr4:7962730 Csa07g00077 Csa-Chr7:752506 6.17E-95 dispersed
Csa04g01017 Csa-Chr4:7962730 Csa04g01018 Csa-Chr4:7964202 0 tandem
Csa03g01928 Csa-Chr3:15085101 Csa04g01017 Csa-Chr4:7962730 2.34E-132 transposed
Csa01g00618 Csa-Chr1:3946497 Csa04g01017 Csa-Chr4:7962730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01017 - - csv:101217724 897.116