Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01017 ATGAGGGTGTTCATTTCAGCTGTCTTCCTTTTTGTCTTTTTTTCTCTTGGAGCTGCCTATGATCCGTTGGATCCAAATGGGAACATTACGATCAAATGGGATATCATGTCTTGGACACCCGATGGCTATGTGGCAGTAGTCACATTGAACAACTTCCAAATGTACCGCCATATAATGAGCCCCGGGTGGACGATGGGGTGGACTTGGGCGAAAAAGGAAGTGATATGGTCGATGGTGGGGTCGCAGACAACGGAGCAAGGTGACTGCTCCAAGTTCAAAGGAAACATTCCTCACTCCTGCAAGAAAAACCCCACTGTTGTAGATTTGATGCCTGGTGTTCCTTACAACCAACAGTTTACAAACTGCTGCAAAGGTGGGGTTGTGGCAGCTTGGGGACAAGACCCTCAAGCTGCTGTTTCAGCCTTTCAGCTTAGTATTGGCCAAGCAGGTACTTCAAACAAGACTGTCAAGCTTCCCAAGAACTTCACTTTGCTCGGTCCTGGCCCCGGATACACTTGTGGCCCTGCAAAAGTTGTGCCTTCCACCACTTTCCTCACACCCGACCGTCGCCGCAAAACTCAAGCTTTGATGACTTGGAATGTGACTTGCACTTACTCTCAGTTTCTAGCAAGAAAGAATCCTAATTGTTGTGTTTCTTTCTCATCTTTCTACAACGATACAATTACATCTTGTCCGTCTTGTGCCTGTGGTTGCCAAAACAAGAGCAATTGTGTACAGAATGATTCTAAGATTCTTAAGCTGGTTGGAATCAATACACCAAGGAAAGACAATGCCCCTTTGCTGCATTGCACACATCACATGTGCCCTGTTCGAGTTCACTGGCACGTAAAGCAAAATTACAAGGAATATTGGCGGGTGAAGATTGCTATCACAAACTTCAACTACCGAATGAACTATTCACTTTGGTCTCTCGTTGTCCAGCACCCAAATCTGAACAATGTAACACAAGTTTTCAGCTTTGACTATAAACCCCTTGTTCCCTATGAATCGATCAATGATACAGGAATGTTTTATGGGATGAAGTTCTATAACGACCTTCTTATGGAAGCGGGGCCATTTGGTAACGTACAATCAGAAGTGTTGCTGCGAAAAGACCAGAATACGTTCACTTTCAAGCAGGGATGGGCATTTCCTCGAAAAGTTTACTTCAATGGCGACGAGTGCATGCTTCCGCCACCCGACACATACCCTTTCCTGCCAAACGCTGCCCAACAAAGGCCAGTTGGCCTCTCATCTTCAATTACTTTGCTGCTGCTCTTGATGCTGCTAGCTATGTGCTGA 1302 45.78 MRVFISAVFLFVFFSLGAAYDPLDPNGNITIKWDIMSWTPDGYVAVVTLNNFQMYRHIMSPGWTMGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNIPHSCKKNPTVVDLMPGVPYNQQFTNCCKGGVVAAWGQDPQAAVSAFQLSIGQAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTTFLTPDRRRKTQALMTWNVTCTYSQFLARKNPNCCVSFSSFYNDTITSCPSCACGCQNKSNCVQNDSKILKLVGINTPRKDNAPLLHCTHHMCPVRVHWHVKQNYKEYWRVKIAITNFNYRMNYSLWSLVVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLRKDQNTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNAAQQRPVGLSSSITLLLLLMLLAMC* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7962730 7965285 + CsaV3_4G010170.1 Csa04g01017 526627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01017 433 PIRSF COBRA 1 433 IPR006918 GO:0010215|GO:0031225
Csa04g01017 433 PANTHER PROTEIN COBRA 7 429 IPR006918 GO:0010215|GO:0031225
Csa04g01017 433 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
Csa04g01017 433 PANTHER COBRA-LIKE PROTEIN 7 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01017 - - - csv:101217724 897.116
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00340 Csa-Chr1:2128397 Csa04g01017 Csa-Chr4:7962730 0 dispersed
Csa03g02318 Csa-Chr3:20725839 Csa04g01017 Csa-Chr4:7962730 2.54E-37 dispersed
Csa04g01017 Csa-Chr4:7962730 Csa07g00077 Csa-Chr7:752506 6.17E-95 dispersed
Csa04g01017 Csa-Chr4:7962730 Csa04g01018 Csa-Chr4:7964202 0 tandem
Csa03g01928 Csa-Chr3:15085101 Csa04g01017 Csa-Chr4:7962730 2.34E-132 transposed
Csa01g00618 Csa-Chr1:3946497 Csa04g01017 Csa-Chr4:7962730 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00341 . 48 447 COBRA Gene Family AT5G60920 80.3 7.5e-210 726.5
Csa04g01018 . 44 450 COBRA Gene Family AT5G60920 74.7 7.3e-197 683.3
Csa04g01017 . 31 427 COBRA Gene Family AT5G60920 67.8 5.3e-179 624.0
Csa01g00340 CCT,ECH 55 455 COBRA Gene Family AT5G60920 67.9 2.0e-178 622.1
Csa01g00618 CCT,ECH 37 434 COBRA Gene Family AT5G60920 60.9 3.2e-152 535.0
Csa03g01928 . 1 348 COBRA Gene Family AT5G60920 54.8 1.7e-113 406.4
Csa01g00341 . 22 451 COBRA Gene Family AT3G02210 73.5 1.8e-204 708.8
Csa04g01018 . 14 453 COBRA Gene Family AT3G02210 73.0 5.4e-201 697.2
Csa04g01017 . 5 429 COBRA Gene Family AT3G02210 66.6 1.2e-179 626.3
Csa01g00340 CCT,ECH 27 433 COBRA Gene Family AT3G02210 68.0 2.9e-178 621.7
Csa01g00618 CCT,ECH 15 422 COBRA Gene Family AT3G02210 60.3 7.6e-155 543.9
Csa03g01928 . 1 356 COBRA Gene Family AT3G02210 54.0 2.5e-113 406.0
Csa01g00341 . 21 446 COBRA Gene Family AT3G29810 74.5 4.0e-201 697.6
Csa04g01018 . 29 448 COBRA Gene Family AT3G29810 72.4 1.8e-193 672.2
Csa04g01017 . 14 410 COBRA Gene Family AT3G29810 67.5 8.5e-175 610.1
Csa01g00340 CCT,ECH 38 435 COBRA Gene Family AT3G29810 67.1 1.1e-174 609.8
Csa01g00618 CCT,ECH 14 415 COBRA Gene Family AT3G29810 59.2 2.5e-150 528.9
Csa03g01928 . 1 352 COBRA Gene Family AT3G29810 54.2 3.5e-112 402.1
Csa01g00340 CCT,ECH 32 363 COBRA Gene Family AT5G15630 83.7 5.7e-179 623.6
Csa04g01017 . 9 339 COBRA Gene Family AT5G15630 81.9 4.2e-174 607.4
Csa01g00341 . 31 361 COBRA Gene Family AT5G15630 73.5 6.6e-151 530.4
Csa04g01018 . 29 358 COBRA Gene Family AT5G15630 68.5 4.6e-144 507.7
Csa01g00618 CCT,ECH 16 343 COBRA Gene Family AT5G15630 62.5 1.2e-131 466.5
Csa03g01928 . 1 264 COBRA Gene Family AT5G15630 50.2 1.3e-74 276.9
Csa01g00341 . 21 224 COBRA Gene Family AT5G60950 57.4 2.2e-64 242.3
Csa04g01018 . 27 220 COBRA Gene Family AT5G60950 60.0 1.4e-63 239.6
Csa04g01017 . 8 207 COBRA Gene Family AT5G60950 55.2 3.6e-59 224.9
Csa01g00340 CCT,ECH 51 231 COBRA Gene Family AT5G60950 57.5 1.9e-57 219.2
Csa01g00618 CCT,ECH 33 215 COBRA Gene Family AT5G60950 52.5 1.4e-47 186.4
Csa04g01018 . 25 427 COBRA Gene Family AT1G09790 53.4 9.5e-134 473.8
Csa01g00340 CCT,ECH 41 434 COBRA Gene Family AT1G09790 53.1 2.3e-132 469.2
Csa01g00341 . 32 432 COBRA Gene Family AT1G09790 53.6 4.0e-132 468.4
Csa04g01017 . 19 410 COBRA Gene Family AT1G09790 51.9 6.0e-128 454.5
Csa03g01928 . 1 338 COBRA Gene Family AT1G09790 61.5 7.3e-126 447.6
Csa03g01498 . 35 643 COBRA Gene Family AT4G16120 67.2 2.9e-256 881.3
Csa03g00533 . 56 669 COBRA Gene Family AT4G16120 52.8 5.5e-202 701.0
Csa03g02318 . 16 569 COBRA Gene Family AT4G16120 54.9 1.0e-195 680.2
Csa03g01498 . 28 635 COBRA Gene Family AT3G16860 64.3 9.1e-242 833.2
Csa03g00533 . 60 661 COBRA Gene Family AT3G16860 52.0 3.0e-192 668.7
Csa03g02318 . 8 581 COBRA Gene Family AT3G16860 52.2 3.3e-183 638.6
Csa03g01498 . 7 630 COBRA Gene Family AT5G49270 62.2 3.0e-240 828.2
Csa03g00533 . 60 672 COBRA Gene Family AT5G49270 50.7 5.5e-194 674.5
Csa03g02318 . 16 596 COBRA Gene Family AT5G49270 51.7 3.2e-186 648.7
Csa03g00533 . 56 676 COBRA Gene Family AT3G20580 63.0 1.0e-248 856.3
Csa03g02318 . 16 599 COBRA Gene Family AT3G20580 61.3 4.5e-228 787.7
Csa03g01498 . 28 627 COBRA Gene Family AT3G20580 54.4 1.0e-203 706.8
Csa03g00533 . 59 677 COBRA Gene Family AT4G27110 62.8 2.4e-242 835.1
Csa03g02318 . 16 597 COBRA Gene Family AT4G27110 61.0 3.6e-217 751.5
Csa03g01498 . 6 645 COBRA Gene Family AT4G27110 51.8 5.2e-200 694.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01017 Csa_Chr04 FPKM 71.760811 74.773804 160.852783 145.787567 58.916874 57.898937 56.109058 130.285461 129.346405 132.379349