Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01018 ATGATTATGGCTCTACCCATTTCCAGATTACACTCTCTCTTTCCCCTTCTCGCCCTTTTTCTTGCCTTCTCTACCTTTCTTGCTTCAACAGAAGCGTATGATCCACTTGATCCAAATGGAAACATAACTATCAAATGGGATATTATGAGCTGGACTGCTGATGGATATGTTGCTGTAGTTACTCTGTATAATTTCCAACAATATCGTCATATTCAAACACCGGGATGGTCTCTTCAATGGAAATGGGCAAAGAAAGAGGTCATATGGAACATGCTGGGAGGCCAAGCAACTGAGCAAGGTGATTGTTCTAGATTTAAGGGGAACATCCCCCATTGCTGCAAGAAGGATCCAACGGTTGTTGATCTATTGCCCGGAACACCTTATAACCAACAGATTGCAAATTGCTGTAAAGGCGGAGTTCTTAACTCCTGGGTGCAAGATCCAGCTACTGCAGTAAGCTCATTTCAGCTCACCGTTGGTTCAGCCGGAACCTCAAATAAAACCGTTCGACTGCCAAAGAACTTCACTTTAAAAGCACCTGGACCTGGTTATACCTGTGGACCAGCCAAAATTGTTAAACCGAGCAAATTCAAATCCCCAGACAAGCGGAGAGTTACACAGGCCTTGATGACATGGAATGTTACATGCACATATTCACAATTTCTGGCCCAAAAGACTCCTACTTGCTGTGTTTCGCTGTCATCATTTTACAACGACACAATTGTTTCTTGCCCGAAATGCTCCTGTGGCTGCCAAAGCAACTTGAACGCACCCCAAAATTGTGTGGAGCCAAATTCTCCATATTTAGCTTCTGTTGTTAACAGTGCTAGTTCTAGCAAGAACAATTTGACACCTTTGGTTCAGTGTACTGGCCACATGTGCCCGATTCGAGTTCACTGGCACGTGAAGATTAACTATAAGGAGTATTGGCGTGTGAAGATCACAATTACAAACTTCAATTACGTGATGAACTATACAAATTGGAACTTAGTTGTCCAACATCCCAACTTCGACAATCTGACACAGATTTTCAGCTTCAACTACCAGTCAATCAATCCATATGGAACAATAAATGATACTGCAATCCTGTGGGGAGTCAAGTTCTACAACGATTTGCTCATGCAAGCAGGTCCTCTTGGGAATGTACAGACAGAGCTTCTTTTCCGGAAGGACCAATCGGATTTCACATTTGATAAAGGTTGGGCTTTCCCTCGGAGGATCTATTTTAATGGGGACAATTGTGTTATGCCACCTCCAGAAGCCTACCCCTTCTTACCGAACAAGGGTTCTAAGCAAGGTGTCTCAGTGTTTACTATGCTTTTGCTGATTTCCTTGACTCTCTTGTCCTTTCACCATTCGTTTGCATAA 1368 43.13 MIMALPISRLHSLFPLLALFLAFSTFLASTEAYDPLDPNGNITIKWDIMSWTADGYVAVVTLYNFQQYRHIQTPGWSLQWKWAKKEVIWNMLGGQATEQGDCSRFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPATAVSSFQLTVGSAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPSKFKSPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVSCPKCSCGCQSNLNAPQNCVEPNSPYLASVVNSASSSKNNLTPLVQCTGHMCPIRVHWHVKINYKEYWRVKITITNFNYVMNYTNWNLVVQHPNFDNLTQIFSFNYQSINPYGTINDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSDFTFDKGWAFPRRIYFNGDNCVMPPPEAYPFLPNKGSKQGVSVFTMLLLISLTLLSFHHSFA* 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7964202 7968234 - CsaV3_4G010180.1 Csa04g01018 526628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01018 455 PIRSF COBRA 4 455 IPR006918 GO:0010215|GO:0031225
Csa04g01018 455 PANTHER COBRA-LIKE PROTEIN 11 453 - -
Csa04g01018 455 Pfam COBRA-like protein 56 219 IPR006918 GO:0010215|GO:0031225
Csa04g01018 455 PANTHER PROTEIN COBRA 11 453 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00341 Csa-Chr1:2130722 Csa04g01018 Csa-Chr4:7964202 0 dispersed
Csa01g00618 Csa-Chr1:3946497 Csa04g01018 Csa-Chr4:7964202 0 dispersed
Csa03g01928 Csa-Chr3:15085101 Csa04g01018 Csa-Chr4:7964202 9.83E-136 dispersed
Csa04g01018 Csa-Chr4:7964202 Csa07g00077 Csa-Chr7:752506 3.88E-100 dispersed
Csa04g01017 Csa-Chr4:7962730 Csa04g01018 Csa-Chr4:7964202 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01018 - - csv:101207224 898.656