Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa04g01035 | ATGCCTGCAGACAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGGTTCATCAAGCTCATCCGCGACGCCATGGCTTAGGTTGAAGGATCCAAGGATTGTGCGCGTTTCGCGAGCTTTCGGAGGCAAAGATCGACACAGCAAAGTTTGTACTATAAGAGGACTGCGCGACAGGCGTGTAAGACTATCAGTTTCCACCGCGATTCAACTCTATGATCTTCAAGACAGGCTGGGGCTTAACCAGCCGAGCAAGGTTGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTACCAATCCCGTCCGCAAGCCTCGGCCTTCACTACCAATCAATGATACCAACAACAACAACAGTCGTACACCCCCATAGATCGGAGTTCAAAATCATTGACAAGGCCGGGGTCGAGGATGAGACCGAACAGAAACAACACAAATCCAATAGTAATCCTTCTCACCCTAATTCTTCTTTCTCAGCCCTTTTGAATAATGTTTCTGCCCCTCCATTTGGTTTTTATTGGGATCATAATCCTCCATCATCATCATCAACAACAACAAACAATAATCTTCCATTTCTTACATCTCAAGCTGGGGATAATAATAACAACAATAACCTTCATACCTTCAATCATCTCAATTTGTCTTTGCCTCCTTCCCCTTTGTCTCTCTCAACTGCCTCTCAGTTTTTGGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAACAACAGCAACAACAATAATCCTTCTTTCCACCCAAATGTTAGGCCTTTTCACTTTAGTATGGCTACTAAATTCCTTCCTCATCAAGACAAGAATAATAACAATGTAGATCCTCCAAGTAAGGATCATGGATTTGCGTCTCATCAATGA | 927 | 42.93 | MPADKHDERHNMIKNSKEENSPPPKLAAGSSSSSATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMIPTTTTVVHPHRSEFKIIDKAGVEDETEQKQHKSNSNPSHPNSSFSALLNNVSAPPFGFYWDHNPPSSSSTTTNNNLPFLTSQAGDNNNNNNLHTFNHLNLSLPPSPLSLSTASQFLEFNHLHQNFFINNNSNNNNPSFHPNVRPFHFSMATKFLPHQDKNNNNVDPPSKDHGFASHQ* | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 8128256 | 8133902 | + | CsaV3_4G010350.1 | Csa04g01035 | 526645 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa04g01035 | 308 | MobiDBLite | consensus disorder prediction | 150 | 177 | - | - | |
| Csa04g01035 | 308 | Pfam | TCP family transcription factor | 55 | 167 | IPR017887 | - | |
| Csa04g01035 | 308 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Csa04g01035 | 308 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Csa04g01035 | 308 | MobiDBLite | consensus disorder prediction | 286 | 308 | - | - | |
| Csa04g01035 | 308 | PANTHER | OS05G0513100 PROTEIN | 25 | 291 | - | - | |
| Csa04g01035 | 308 | ProSiteProfiles | TCP domain profile. | 55 | 113 | IPR017887 | - | |
| Csa04g01035 | 308 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 25 | 291 | IPR005333 | GO:0003700 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g00299 | Csa-Chr1:1878119 | Csa04g01035 | Csa-Chr4:8128256 | 7.77E-41 | dispersed | |
| Csa04g01035 | Csa-Chr4:8128256 | Csa04g02301 | Csa-Chr4:23557324 | 1.73E-24 | dispersed | |
| Csa01g00466 | Csa-Chr1:2961631 | Csa04g01035 | Csa-Chr4:8128256 | 1.88E-29 | transposed | |
| Csa06g03800 | Csa-Chr6:30196611 | Csa04g01035 | Csa-Chr4:8128256 | 4.15E-31 | transposed | |
| Csa01g00607 | Csa-Chr1:3883775 | Csa04g01035 | Csa-Chr4:8128256 | 8.35E-37 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 31540 | PF03634 | TCP | 3.60E-28 | No_clan | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa04g01035 | - | - | csv:101216548 | 559.681 |