Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01035 ATGCCTGCAGACAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGGTTCATCAAGCTCATCCGCGACGCCATGGCTTAGGTTGAAGGATCCAAGGATTGTGCGCGTTTCGCGAGCTTTCGGAGGCAAAGATCGACACAGCAAAGTTTGTACTATAAGAGGACTGCGCGACAGGCGTGTAAGACTATCAGTTTCCACCGCGATTCAACTCTATGATCTTCAAGACAGGCTGGGGCTTAACCAGCCGAGCAAGGTTGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTACCAATCCCGTCCGCAAGCCTCGGCCTTCACTACCAATCAATGATACCAACAACAACAACAGTCGTACACCCCCATAGATCGGAGTTCAAAATCATTGACAAGGCCGGGGTCGAGGATGAGACCGAACAGAAACAACACAAATCCAATAGTAATCCTTCTCACCCTAATTCTTCTTTCTCAGCCCTTTTGAATAATGTTTCTGCCCCTCCATTTGGTTTTTATTGGGATCATAATCCTCCATCATCATCATCAACAACAACAAACAATAATCTTCCATTTCTTACATCTCAAGCTGGGGATAATAATAACAACAATAACCTTCATACCTTCAATCATCTCAATTTGTCTTTGCCTCCTTCCCCTTTGTCTCTCTCAACTGCCTCTCAGTTTTTGGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAACAACAGCAACAACAATAATCCTTCTTTCCACCCAAATGTTAGGCCTTTTCACTTTAGTATGGCTACTAAATTCCTTCCTCATCAAGACAAGAATAATAACAATGTAGATCCTCCAAGTAAGGATCATGGATTTGCGTCTCATCAATGA 927 42.93 MPADKHDERHNMIKNSKEENSPPPKLAAGSSSSSATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMIPTTTTVVHPHRSEFKIIDKAGVEDETEQKQHKSNSNPSHPNSSFSALLNNVSAPPFGFYWDHNPPSSSSTTTNNNLPFLTSQAGDNNNNNNLHTFNHLNLSLPPSPLSLSTASQFLEFNHLHQNFFINNNSNNNNPSFHPNVRPFHFSMATKFLPHQDKNNNNVDPPSKDHGFASHQ* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8128256 8133902 + CsaV3_4G010350.1 Csa04g01035 526645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01035 308 MobiDBLite consensus disorder prediction 150 177 - -
Csa04g01035 308 Pfam TCP family transcription factor 55 167 IPR017887 -
Csa04g01035 308 MobiDBLite consensus disorder prediction 1 37 - -
Csa04g01035 308 MobiDBLite consensus disorder prediction 1 16 - -
Csa04g01035 308 MobiDBLite consensus disorder prediction 286 308 - -
Csa04g01035 308 PANTHER OS05G0513100 PROTEIN 25 291 - -
Csa04g01035 308 ProSiteProfiles TCP domain profile. 55 113 IPR017887 -
Csa04g01035 308 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 25 291 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01035 - - - csv:101216548 559.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00299 Csa-Chr1:1878119 Csa04g01035 Csa-Chr4:8128256 7.77E-41 dispersed
Csa04g01035 Csa-Chr4:8128256 Csa04g02301 Csa-Chr4:23557324 1.73E-24 dispersed
Csa01g00466 Csa-Chr1:2961631 Csa04g01035 Csa-Chr4:8128256 1.88E-29 transposed
Csa06g03800 Csa-Chr6:30196611 Csa04g01035 Csa-Chr4:8128256 4.15E-31 transposed
Csa01g00607 Csa-Chr1:3883775 Csa04g01035 Csa-Chr4:8128256 8.35E-37 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01450 . 44 265 TCP Transcription Factor Family AT5G23280 62.0 5.9e-64 241.1
Csa05g00601 . 34 257 TCP Transcription Factor Family AT5G23280 59.1 8.8e-60 227.3
Csa06g00596 . 65 324 TCP Transcription Factor Family AT2G45680 54.1 6.8e-66 248.1
Csa05g02440 . 70 164 TCP Transcription Factor Family AT3G47620 89.7 8.0e-41 165.2
Csa01g00533 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Csa05g02171 . 47 148 TCP Transcription Factor Family AT1G69690 78.8 2.7e-37 152.9
Csa03g02480 . 42 295 TCP Transcription Factor Family AT3G27010 54.6 1.2e-58 223.8
Csa06g00805 . 36 268 TCP Transcription Factor Family AT3G27010 51.6 1.1e-51 200.7
Csa05g00601 . 4 254 TCP Transcription Factor Family AT5G08330 54.8 2.8e-63 238.8
Csa05g01450 . 30 263 TCP Transcription Factor Family AT5G08330 59.3 9.0e-62 233.8
Csa04g01035 . 38 172 TCP Transcription Factor Family AT3G02150 57.4 1.1e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31540 PF03634 TCP 3.60E-28 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01035 Csa_Chr04 FPKM 14.053326 14.623024 11.772116 12.370591 33.87944 35.245445 34.243767 34.560108 31.05172 30.609934