Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01050 ATGCCCCTATTTCCCTCCTTCTTCTTTCTCACTACCTTCTCCTTCTTCCTTTCTTTCACTTCCTCTCTCAACTCCGATGGCCTCTCCCTTCTCGCCCTCAAAGCCGCCATTGAATCCGACCCATCTCACGTTCTCGAGTCCTGGTCCGAGTTTGATTCCACCCCATGTCACTGGCCCGGAATCGTCTGCACTCGCGATCGAGTCACTCAGCTCTCTCTCCCCAACAAAGGTCTCACTGGCTACATTCCTTCTGAACTCGGCCTCCTCGATTCCCTCCGTCGTCTCTCCCTCGCCTTCAACAATTTCTCTAAACCCATTCCTTCTCATCTCTACAACGCTACAAATCTCGTCGTTCTAGACCTTTCCCACAATGCTCTCTCTGGCTCGCTTTCCGATCAAATCGGCGATCTGAGGAAGCTTCGCCATCTCGATTTATCCTCAAATGCTCTCAATGGTTCTCTTCCTAATCGACTTACTGACCTAACCGAACTCGTCGGAACTCTCAATCTGTCCTACAATCGATTCTCCGGCGAGGTTCCCCCTTCCTTCGGAAACCTCCCGCTGATCGTGAATCTCGACGTCCGTCACAACAATCTCACCGGAAAAATCCCTCAGGTGGGTTCGCTGTTGAATCAAGGTCCGACGGCATTCTCCGGAAACCCGAGTCTGTGTGGGTTTCCGTTACAAACACCATGTCCAGAAGCTCAGAACCCGAACATCTTTCCAGAGAACCCGCAGAATCCCAAGTCGGTAAACGGCAACTTCCAGGGCTACGGCAGCGGGAGAGAGAGTGGTGGCGGTGGCGTGGCGGGGTCAGCGACTGTGGCCGTGGTATCTTCAATAATCGCATTGGTGGGGGTGGTATCGGTGACGGTGTGGTGGTTCCGGAGGAAGACGGCAGTGGGGAGGCCAGAGGAGGGGAAAACGGGAAAAGGGAGTCCGGAAGGGGAAAGTTGCGGTGATTTGGAAGGGCAAGATGGTAAGTTCGTGGTGATGGATGAAGGGATGAATTTGGAATTAGAGGATTTGTTAAGGGCATCGGCATACGTGGTGGGGAAGAGTAGGAGTGGGATTGTGTATAAGGTAGTGGCGGGTAGGGGATCCACTGCGGGCGCCAGTATTGTAGCTGTAAGGAGACTTAACGATACTGATGCCACGTTGACGTTTAAGGATTTTGAGAATGAGATCGAGTCCATTGGTAGGATCAACCATCCCAACATCGTACGGTTGAGAGCTTATTACTATGCAAGTGATGAGAAATTGCTGGTCACTGATTTTATTAAAAATGGAAGCTTGCACGCTGCCCTACACGGAAGTCCATCTAGTTCTTTGTTACCTCTGCCTTGGGCTGCAAGGTTAAAAATTGCTCAAGGAGCTGCAAGGGGTTTGGCATACATTCATGAATTTGGTGCTCGGAAATACGTACATGGAAACATTAAATCAACAAAAATTCTTCTTGACGATGATTTTGAGCCTTACATTTCAGGTTTTGGACTTGGTCGTCTTGGCCAAGGAGTGCCTAAGTTCAGTGCAACTTCGTCTAAGAAGTTGAGCTCAAGCCAAAATATGATAAGCTCAATCATGGGAACAAGCATTTCAACTCCCTCTCCGATGTATTTGGCACCCGAGGTTCGGGAGTTTGGAGGGAAGTACACGCAGAAATGTGACGTGTACTCGTTTGGCATTGTGCTTTTAGAAGTTTTGAGTGGTAGATTACCGGATGCAGGATCGGAAAATGATGGGAAGGGGTTGGAATGTTTCGTGAGAAAGGCGTTTCAAGAAGAACGCCCCTTGACTGAGGTTATAGACCAGGCGCTTGTGCCAGAGATTTATGCAAAGAAACAAGTGGTTTCGATGTTTCACATTGCACTGAATTGCACGGAGCTTGATCCCGAGCTACGTCCGAGAATGAGAACAATATCAGAGAGTCTCGATCGAGTTAAATCTCAATGA 1953 49.36 MPLFPSFFFLTTFSFFLSFTSSLNSDGLSLLALKAAIESDPSHVLESWSEFDSTPCHWPGIVCTRDRVTQLSLPNKGLTGYIPSELGLLDSLRRLSLAFNNFSKPIPSHLYNATNLVVLDLSHNALSGSLSDQIGDLRKLRHLDLSSNALNGSLPNRLTDLTELVGTLNLSYNRFSGEVPPSFGNLPLIVNLDVRHNNLTGKIPQVGSLLNQGPTAFSGNPSLCGFPLQTPCPEAQNPNIFPENPQNPKSVNGNFQGYGSGRESGGGGVAGSATVAVVSSIIALVGVVSVTVWWFRRKTAVGRPEEGKTGKGSPEGESCGDLEGQDGKFVVMDEGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGSTAGASIVAVRRLNDTDATLTFKDFENEIESIGRINHPNIVRLRAYYYASDEKLLVTDFIKNGSLHAALHGSPSSSLLPLPWAARLKIAQGAARGLAYIHEFGARKYVHGNIKSTKILLDDDFEPYISGFGLGRLGQGVPKFSATSSKKLSSSQNMISSIMGTSISTPSPMYLAPEVREFGGKYTQKCDVYSFGIVLLEVLSGRLPDAGSENDGKGLECFVRKAFQEERPLTEVIDQALVPEIYAKKQVVSMFHIALNCTELDPELRPRMRTISESLDRVKSQ* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8380657 8385317 + CsaV3_4G010500.1 Csa04g01050 526660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01050 650 ProSiteProfiles Protein kinase domain profile. 345 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01050 650 SUPERFAMILY L domain-like 25 229 - -
Csa04g01050 650 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Csa04g01050 650 SUPERFAMILY Protein kinase-like (PK-like) 350 643 IPR011009 -
Csa04g01050 650 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 13 650 - -
Csa04g01050 650 Pfam Protein tyrosine and serine/threonine kinase 351 644 IPR001245 GO:0004672|GO:0006468
Csa04g01050 650 Gene3D Phosphorylase Kinase; domain 1 328 426 - -
Csa04g01050 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 650 - -
Csa04g01050 650 Gene3D Ribonuclease Inhibitor 167 234 IPR032675 -
Csa04g01050 650 PRINTS Leucine-rich repeat signature 116 129 - -
Csa04g01050 650 PRINTS Leucine-rich repeat signature 137 150 - -
Csa04g01050 650 Gene3D Ribonuclease Inhibitor 23 166 IPR032675 -
Csa04g01050 650 Gene3D Transferase(Phosphotransferase) domain 1 427 650 - -
Csa04g01050 650 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01050 Csa-Chr4:8380657 Csa05g02220 Csa-Chr5:24983100 5.06E-169 dispersed
Csa04g01050 Csa-Chr4:8380657 Csa05g02641 Csa-Chr5:27467713 6.56E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78138 PF07714 PK_Tyr_Ser-Thr 2.50E-26 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01050 - - csv:101212426 1156.74