Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01076 ATGGCCTTTTTGTGTTTTTGTTCTCTCTCCATTTTCCTTGTTGTTGGGCTTCTTTCAAATTCCCAGTTCTTGGGAGCTCAGCTTGATGATCAAATCACTATGTCCACCATTAGAGAAGAGCTTCAAGTTCCTGGGTGGAGCTCTAGCATCTCTGAGTACTGCTCTTGGAAAGGTGTTCATTGTGGTTTGAATCACTCCATGGTTGAAACTCTTGATCTTTCTGGTCGTTCTCTTAGAGCTAATTTAACTATGATTTCTGAGCTCAAAGCTTTGAAGTGGCTTGACCTATCCTACAATGACTTCCACGGCGAGATTCCGTTGAGTTTTGCAAAGTTACCGGAGCTCGAATTCCTTGATTTGTCTTCGAACAAGTTTGATGGTTCGATTCCGCCTCAGTTTGGTGATCTCAAGAACCTCAAATCATTGAACCTCTCCAATAATTTGTTGGTGGGAGAAATTCCAGATGAACTTCAAGGCTTAGAGAAGTTGCAAGATTTTCAAATTTCTAGCAACAGGTTAAATGGTTCAATTCCAAGTTGGGTTGGAAATTTGAGTCATCTAAGACTCTTTACAGCCTATGAGAATAACTTTGATGGTATGATTCCGGATAATCTTGGTTCAGTTTCTGCGCTCCAAGTATTGAATCTGCATACGAACAGGCTTGAAGGCTCGATTCCTAGAAGCATTTTCGCTTCGGGGAAGCTTGAGATTTTGGTTCTTACACAAAACAGATTGACTGGCAATCTTCCTGAAGAGATTGGGAACTGCCAAAGGCTTACTAGCGTTCGAATCGGTAACAATAATCTTGTTGGTGTAATTCCTCCGGCCATTGGAAATGTTACTAGCCTTGCTTACTTTGAAGTGGATAACAATCACCTTTCAGGCGATATAGCGTCTCAGTTTTCGAGGTGCTCTAATCTTACCCTGCTGAATCTAGCCTCGAACGGATTCACTGGGATGATTCCTCCTGAACTTGGAGAGCTCATGAATCTGCAGGAGCTTATTCTTTCTGGTAATAGTCTGTATGGTGACATTCCGGGATCAATGCTCGAATGCAAGAATCTCAACAAGCTTGATTTAAGCAGCAATAGATTTAATGGTACTATTCCCTCAGATATATGCAATATATCAAGATTGCAGTACTTACTTTTGGAACAGAATTCAATCAAAGGAGAGATACCTAATGAGATTGGAAAATGTACAAAGCTTCTTGACCTGCGACTTGGTAGTAACTATCTAACTGGAAGCATCCCTTCTGAGATTGGTCGTATTAAGAACTTACAGATAGCTTTGAACTTGAGCTTCAATCATCTAAATGGACCAGTGCCTCCTGAGTTGGGAAGACTTGATAAACTGGTTACTTTAGATTTATCAAACAATCATCTCTCGGGCGATATCCCTTCTGAGCTCAAGGGCATGTTAAGCTTGATAGAGGTGAATTTTTCAAATAATCTGCTTACAGGTTCAATTCCTTTCTTTGTTCCATTCCAGAAAAGTGCAAATTCTAGTTTTCTGGGGAACGAAGGCCTTTGCGGGGCGCCACTCAGCATTACGTGTAAGAATTCAATTGGTCCATACAATCAAGATTACCATCACAAGGTCTCATACAAGATCATACTGGCTGTCATCGGTTCCGGTCTGGCAGTTTTTGTATCGGTTACTATAGTTGTCCTACTTTTTGTGATGAAGGAAAAGCAGGAAAAAGCAGCAAAATCTTCAGGGACCGCAGATGATGAAACTATCAATGACCAACCACCGATAATAGCAGGAAATGTCTTCGACGATAATCTCCAACAGGAAATCGATCTCGACGCAGTCGTTAAAGCAACTTTGAAGGATTCAAACAAGCTCATCTTTGGGACTTTTAGTACTGTTTATAAGGCGATCATGCCTTCGGGTATGATCATATCAGTTAAGAGATTAAAATCCATGGACAAAACTATTATTCATCATCAAAGCAAGATGATTAGAGAACTTGAAAGGCTTGGCAAATTGAACCATGCTAATCTTTTGCAACTCATTGGATATGTAATATATGAGGATGTGGCTCTGTTGCTTCACAATTACTTAACCAATGGAACATTGGCTCAGCTTCTTCATGAATCCACAAAACAACCTGAATATGATCCTGATTGGCCCACGAGATTTTCCATTGCCATTGGAGCAGCAGAAGGGCTTGCTTTTCTTCATCATGTGGCCATAATCCATCTTGATATTTCATCATCTAATGTTTTTTTAGATGCCAACTTCAAACCTTTGGTTGGAGAAGTTGAGATCTCAAAACTTTTAGATCCATCAAGAGGAACTGCAAGTATTAGTGCTGTTGCAGGTTCATTTGGCTACATTCCACCAGAATATGCTTATACAATGCAAGTTACAGCCCCGGGAAACGTCTATAGCTACGGTGTCATCTTGCTTGAGATCCTCACTACCAGACTGCCAGTTGATGAGGAGTTTGGTGAAGGAGTAGACTTGGTGAAATGGGTGCATACTGCTCCATCGAGGGGTGAAACACCTGAACAGATACTCGATTCCCGGCTGAGCACGGTGTCGTTCGGATGGAGGAAGGAGATGCTTGCGGCTCTCAAGATTGCATTGCTCTGCACTGACAGCATACCAGCCAAAAGGCCAAAAATGAAGAAGGTGGTGGAAATGCTTTCGGAGATTAAGCAAAATTGA 2679 41.43 MAFLCFCSLSIFLVVGLLSNSQFLGAQLDDQITMSTIREELQVPGWSSSISEYCSWKGVHCGLNHSMVETLDLSGRSLRANLTMISELKALKWLDLSYNDFHGEIPLSFAKLPELEFLDLSSNKFDGSIPPQFGDLKNLKSLNLSNNLLVGEIPDELQGLEKLQDFQISSNRLNGSIPSWVGNLSHLRLFTAYENNFDGMIPDNLGSVSALQVLNLHTNRLEGSIPRSIFASGKLEILVLTQNRLTGNLPEEIGNCQRLTSVRIGNNNLVGVIPPAIGNVTSLAYFEVDNNHLSGDIASQFSRCSNLTLLNLASNGFTGMIPPELGELMNLQELILSGNSLYGDIPGSMLECKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGEIPNEIGKCTKLLDLRLGSNYLTGSIPSEIGRIKNLQIALNLSFNHLNGPVPPELGRLDKLVTLDLSNNHLSGDIPSELKGMLSLIEVNFSNNLLTGSIPFFVPFQKSANSSFLGNEGLCGAPLSITCKNSIGPYNQDYHHKVSYKIILAVIGSGLAVFVSVTIVVLLFVMKEKQEKAAKSSGTADDETINDQPPIIAGNVFDDNLQQEIDLDAVVKATLKDSNKLIFGTFSTVYKAIMPSGMIISVKRLKSMDKTIIHHQSKMIRELERLGKLNHANLLQLIGYVIYEDVALLLHNYLTNGTLAQLLHESTKQPEYDPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVFLDANFKPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHTAPSRGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLSEIKQN* 893
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 8806507 8810408 + CsaV3_4G011750.1 Csa04g01076 526686
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01076 892 ProSiteProfiles Protein kinase domain profile. 611 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01076 892 Pfam Leucine rich repeat 330 389 IPR001611 GO:0005515
Csa04g01076 892 Gene3D Ribonuclease Inhibitor 27 171 IPR032675 -
Csa04g01076 892 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 889 - -
Csa04g01076 892 Pfam Leucine Rich repeats (2 copies) 113 155 IPR025875 -
Csa04g01076 892 Gene3D Phosphorylase Kinase; domain 1 580 689 - -
Csa04g01076 892 SUPERFAMILY L domain-like 291 516 - -
Csa04g01076 892 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 1 889 - -
Csa04g01076 892 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515
Csa04g01076 892 Gene3D Ribonuclease Inhibitor 232 522 IPR032675 -
Csa04g01076 892 CDD STKc_IRAK 620 889 - -
Csa04g01076 892 SMART LRR_typ_2 88 111 IPR003591 -
Csa04g01076 892 SMART LRR_typ_2 449 472 IPR003591 -
Csa04g01076 892 SMART LRR_typ_2 328 352 IPR003591 -
Csa04g01076 892 SMART LRR_typ_2 376 400 IPR003591 -
Csa04g01076 892 SMART LRR_typ_2 136 159 IPR003591 -
Csa04g01076 892 SMART LRR_typ_2 208 232 IPR003591 -
Csa04g01076 892 SMART LRR_typ_2 112 135 IPR003591 -
Csa04g01076 892 SMART LRR_typ_2 160 184 IPR003591 -
Csa04g01076 892 ProSitePatterns Tyrosine protein kinases specific active-site signature. 734 746 IPR008266 GO:0004672|GO:0006468
Csa04g01076 892 Pfam Protein kinase domain 615 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01076 892 Gene3D Transferase(Phosphotransferase) domain 1 690 892 - -
Csa04g01076 892 SUPERFAMILY Protein kinase-like (PK-like) 613 886 IPR011009 -
Csa04g01076 892 SUPERFAMILY L domain-like 36 346 - -
Csa04g01076 892 Gene3D Ribonuclease Inhibitor 172 231 IPR032675 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01076 Csa-Chr4:8806507 Csa03g01135 Csa-Chr3:8937734 5.69E-80 dispersed
Csa04g01076 Csa-Chr4:8806507 Csa02g00996 Csa-Chr2:9583496 1.77E-28 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78139 PF00069 Pkinase 1.00E-26 CL0016 Csa PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01076 - - csv:101215786 1748.41