Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01076 | ATGGCCTTTTTGTGTTTTTGTTCTCTCTCCATTTTCCTTGTTGTTGGGCTTCTTTCAAATTCCCAGTTCTTGGGAGCTCAGCTTGATGATCAAATCACTATGTCCACCATTAGAGAAGAGCTTCAAGTTCCTGGGTGGAGCTCTAGCATCTCTGAGTACTGCTCTTGGAAAGGTGTTCATTGTGGTTTGAATCACTCCATGGTTGAAACTCTTGATCTTTCTGGTCGTTCTCTTAGAGCTAATTTAACTATGATTTCTGAGCTCAAAGCTTTGAAGTGGCTTGACCTATCCTACAATGACTTCCACGGCGAGATTCCGTTGAGTTTTGCAAAGTTACCGGAGCTCGAATTCCTTGATTTGTCTTCGAACAAGTTTGATGGTTCGATTCCGCCTCAGTTTGGTGATCTCAAGAACCTCAAATCATTGAACCTCTCCAATAATTTGTTGGTGGGAGAAATTCCAGATGAACTTCAAGGCTTAGAGAAGTTGCAAGATTTTCAAATTTCTAGCAACAGGTTAAATGGTTCAATTCCAAGTTGGGTTGGAAATTTGAGTCATCTAAGACTCTTTACAGCCTATGAGAATAACTTTGATGGTATGATTCCGGATAATCTTGGTTCAGTTTCTGCGCTCCAAGTATTGAATCTGCATACGAACAGGCTTGAAGGCTCGATTCCTAGAAGCATTTTCGCTTCGGGGAAGCTTGAGATTTTGGTTCTTACACAAAACAGATTGACTGGCAATCTTCCTGAAGAGATTGGGAACTGCCAAAGGCTTACTAGCGTTCGAATCGGTAACAATAATCTTGTTGGTGTAATTCCTCCGGCCATTGGAAATGTTACTAGCCTTGCTTACTTTGAAGTGGATAACAATCACCTTTCAGGCGATATAGCGTCTCAGTTTTCGAGGTGCTCTAATCTTACCCTGCTGAATCTAGCCTCGAACGGATTCACTGGGATGATTCCTCCTGAACTTGGAGAGCTCATGAATCTGCAGGAGCTTATTCTTTCTGGTAATAGTCTGTATGGTGACATTCCGGGATCAATGCTCGAATGCAAGAATCTCAACAAGCTTGATTTAAGCAGCAATAGATTTAATGGTACTATTCCCTCAGATATATGCAATATATCAAGATTGCAGTACTTACTTTTGGAACAGAATTCAATCAAAGGAGAGATACCTAATGAGATTGGAAAATGTACAAAGCTTCTTGACCTGCGACTTGGTAGTAACTATCTAACTGGAAGCATCCCTTCTGAGATTGGTCGTATTAAGAACTTACAGATAGCTTTGAACTTGAGCTTCAATCATCTAAATGGACCAGTGCCTCCTGAGTTGGGAAGACTTGATAAACTGGTTACTTTAGATTTATCAAACAATCATCTCTCGGGCGATATCCCTTCTGAGCTCAAGGGCATGTTAAGCTTGATAGAGGTGAATTTTTCAAATAATCTGCTTACAGGTTCAATTCCTTTCTTTGTTCCATTCCAGAAAAGTGCAAATTCTAGTTTTCTGGGGAACGAAGGCCTTTGCGGGGCGCCACTCAGCATTACGTGTAAGAATTCAATTGGTCCATACAATCAAGATTACCATCACAAGGTCTCATACAAGATCATACTGGCTGTCATCGGTTCCGGTCTGGCAGTTTTTGTATCGGTTACTATAGTTGTCCTACTTTTTGTGATGAAGGAAAAGCAGGAAAAAGCAGCAAAATCTTCAGGGACCGCAGATGATGAAACTATCAATGACCAACCACCGATAATAGCAGGAAATGTCTTCGACGATAATCTCCAACAGGAAATCGATCTCGACGCAGTCGTTAAAGCAACTTTGAAGGATTCAAACAAGCTCATCTTTGGGACTTTTAGTACTGTTTATAAGGCGATCATGCCTTCGGGTATGATCATATCAGTTAAGAGATTAAAATCCATGGACAAAACTATTATTCATCATCAAAGCAAGATGATTAGAGAACTTGAAAGGCTTGGCAAATTGAACCATGCTAATCTTTTGCAACTCATTGGATATGTAATATATGAGGATGTGGCTCTGTTGCTTCACAATTACTTAACCAATGGAACATTGGCTCAGCTTCTTCATGAATCCACAAAACAACCTGAATATGATCCTGATTGGCCCACGAGATTTTCCATTGCCATTGGAGCAGCAGAAGGGCTTGCTTTTCTTCATCATGTGGCCATAATCCATCTTGATATTTCATCATCTAATGTTTTTTTAGATGCCAACTTCAAACCTTTGGTTGGAGAAGTTGAGATCTCAAAACTTTTAGATCCATCAAGAGGAACTGCAAGTATTAGTGCTGTTGCAGGTTCATTTGGCTACATTCCACCAGAATATGCTTATACAATGCAAGTTACAGCCCCGGGAAACGTCTATAGCTACGGTGTCATCTTGCTTGAGATCCTCACTACCAGACTGCCAGTTGATGAGGAGTTTGGTGAAGGAGTAGACTTGGTGAAATGGGTGCATACTGCTCCATCGAGGGGTGAAACACCTGAACAGATACTCGATTCCCGGCTGAGCACGGTGTCGTTCGGATGGAGGAAGGAGATGCTTGCGGCTCTCAAGATTGCATTGCTCTGCACTGACAGCATACCAGCCAAAAGGCCAAAAATGAAGAAGGTGGTGGAAATGCTTTCGGAGATTAAGCAAAATTGA | 2679 | 41.43 | MAFLCFCSLSIFLVVGLLSNSQFLGAQLDDQITMSTIREELQVPGWSSSISEYCSWKGVHCGLNHSMVETLDLSGRSLRANLTMISELKALKWLDLSYNDFHGEIPLSFAKLPELEFLDLSSNKFDGSIPPQFGDLKNLKSLNLSNNLLVGEIPDELQGLEKLQDFQISSNRLNGSIPSWVGNLSHLRLFTAYENNFDGMIPDNLGSVSALQVLNLHTNRLEGSIPRSIFASGKLEILVLTQNRLTGNLPEEIGNCQRLTSVRIGNNNLVGVIPPAIGNVTSLAYFEVDNNHLSGDIASQFSRCSNLTLLNLASNGFTGMIPPELGELMNLQELILSGNSLYGDIPGSMLECKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGEIPNEIGKCTKLLDLRLGSNYLTGSIPSEIGRIKNLQIALNLSFNHLNGPVPPELGRLDKLVTLDLSNNHLSGDIPSELKGMLSLIEVNFSNNLLTGSIPFFVPFQKSANSSFLGNEGLCGAPLSITCKNSIGPYNQDYHHKVSYKIILAVIGSGLAVFVSVTIVVLLFVMKEKQEKAAKSSGTADDETINDQPPIIAGNVFDDNLQQEIDLDAVVKATLKDSNKLIFGTFSTVYKAIMPSGMIISVKRLKSMDKTIIHHQSKMIRELERLGKLNHANLLQLIGYVIYEDVALLLHNYLTNGTLAQLLHESTKQPEYDPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVFLDANFKPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHTAPSRGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLSEIKQN* | 893 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8806507 | 8810408 | + | CsaV3_4G011750.1 | Csa04g01076 | 526686 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01076 | 892 | ProSiteProfiles | Protein kinase domain profile. | 611 | 892 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g01076 | 892 | Pfam | Leucine rich repeat | 330 | 389 | IPR001611 | GO:0005515 | |
Csa04g01076 | 892 | Gene3D | Ribonuclease Inhibitor | 27 | 171 | IPR032675 | - | |
Csa04g01076 | 892 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 1 | 889 | - | - | |
Csa04g01076 | 892 | Pfam | Leucine Rich repeats (2 copies) | 113 | 155 | IPR025875 | - | |
Csa04g01076 | 892 | Gene3D | Phosphorylase Kinase; domain 1 | 580 | 689 | - | - | |
Csa04g01076 | 892 | SUPERFAMILY | L domain-like | 291 | 516 | - | - | |
Csa04g01076 | 892 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 | 1 | 889 | - | - | |
Csa04g01076 | 892 | Pfam | Leucine Rich Repeat | 451 | 472 | IPR001611 | GO:0005515 | |
Csa04g01076 | 892 | Gene3D | Ribonuclease Inhibitor | 232 | 522 | IPR032675 | - | |
Csa04g01076 | 892 | CDD | STKc_IRAK | 620 | 889 | - | - | |
Csa04g01076 | 892 | SMART | LRR_typ_2 | 88 | 111 | IPR003591 | - | |
Csa04g01076 | 892 | SMART | LRR_typ_2 | 449 | 472 | IPR003591 | - | |
Csa04g01076 | 892 | SMART | LRR_typ_2 | 328 | 352 | IPR003591 | - | |
Csa04g01076 | 892 | SMART | LRR_typ_2 | 376 | 400 | IPR003591 | - | |
Csa04g01076 | 892 | SMART | LRR_typ_2 | 136 | 159 | IPR003591 | - | |
Csa04g01076 | 892 | SMART | LRR_typ_2 | 208 | 232 | IPR003591 | - | |
Csa04g01076 | 892 | SMART | LRR_typ_2 | 112 | 135 | IPR003591 | - | |
Csa04g01076 | 892 | SMART | LRR_typ_2 | 160 | 184 | IPR003591 | - | |
Csa04g01076 | 892 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 734 | 746 | IPR008266 | GO:0004672|GO:0006468 | |
Csa04g01076 | 892 | Pfam | Protein kinase domain | 615 | 821 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g01076 | 892 | Gene3D | Transferase(Phosphotransferase) domain 1 | 690 | 892 | - | - | |
Csa04g01076 | 892 | SUPERFAMILY | Protein kinase-like (PK-like) | 613 | 886 | IPR011009 | - | |
Csa04g01076 | 892 | SUPERFAMILY | L domain-like | 36 | 346 | - | - | |
Csa04g01076 | 892 | Gene3D | Ribonuclease Inhibitor | 172 | 231 | IPR032675 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01076 | Csa-Chr4:8806507 | Csa03g01135 | Csa-Chr3:8937734 | 5.69E-80 | dispersed | |
Csa04g01076 | Csa-Chr4:8806507 | Csa02g00996 | Csa-Chr2:9583496 | 1.77E-28 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78139 | PF00069 | Pkinase | 1.00E-26 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01076 | - | - | csv:101215786 | 1748.41 |