Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01079 ATGGGAACCCCGGAATTCCCTAATCTCGGGAAGCATTGCAACTTTGCAGAATGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGCTGTCACCAGGTCTTCTGTTTGGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAGCAGATAGATGGGATGTCACCGTTGTCATTTGTCCGCTGTGTGCCAAAGGAGTTCGTCTCATTCCAGATCAAGATCCAAACATTACTTGGGAGATACATGTAAACACTGAATGTGACCCATCGAATTATGATAAAGTCACAAAGAAGAAAAAATGCCCTGTACCTGGCTGCAGGGAGTTGCTAACGTTTTCAAACACAATCAAATGTCGGGACTGCTCATTAGACCATTGTTTGAAGCATCGGTTTGGACCTGACCATAAATGTCCTGGACCAAAAAAACTCGAACCAACAGGTTTTCCATTTGTTGGTCTATTAAACAGAAGTAGAAAAGAAGAGAAAGGGCCTAAGAAAGCATTGTCCACCACATCCTCCTCTAAGTGGACTGCGTTCCTTAATGCAGCCTCATCTGTTAAAGCCTCAGCCGAAGCAAGCATGACGAAGTTGTCAAATGAATTCAGTCAAACTTGGATATCATCAGGTAGCAGCAGCAATGGGGGAGGTGGAAATGGACAAATTGAGCAATGTCCACAATGCAGTGCTAAGTTTTCATCAGTTTCGTCATTAATAGACCATGTTGAAAAAGTTCATGAAAGGGGTGGAAATCGAACTGGGCCGAAGAAGGTTGTGATCGATGCTTGTCCAAAGTGTAGTAGAGGATTTGTTGACCCTGTTGCCCTTGTGGAACATATTGAGAGGGATCATGGTGGCACTTCGAGAGCTTGA 870 43.91 MGTPEFPNLGKHCNFAECKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKADRWDVTVVICPLCAKGVRLIPDQDPNITWEIHVNTECDPSNYDKVTKKKKCPVPGCRELLTFSNTIKCRDCSLDHCLKHRFGPDHKCPGPKKLEPTGFPFVGLLNRSRKEEKGPKKALSTTSSSKWTAFLNAASSVKASAEASMTKLSNEFSQTWISSGSSSNGGGGNGQIEQCPQCSAKFSSVSSLIDHVEKVHERGGNRTGPKKVVIDACPKCSRGFVDPVALVEHIERDHGGTSRA* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8821165 8823868 - CsaV3_4G011780.1 Csa04g01079 526689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01079 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 245 IPR013087 -
Csa04g01079 289 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Csa04g01079 289 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Csa04g01079 289 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 289 - -
Csa04g01079 289 Pfam C2H2-type zinc finger 223 245 - -
Csa04g01079 289 Gene3D - 2 58 IPR035896 -
Csa04g01079 289 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Csa04g01079 289 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Csa04g01079 289 ProSitePatterns Zinc finger C2H2 type domain signature. 262 283 IPR013087 -
Csa04g01079 289 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Csa04g01079 289 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Csa04g01079 289 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Csa04g01079 289 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Csa04g01079 289 SMART c2h2final6 222 245 IPR013087 -
Csa04g01079 289 SMART c2h2final6 260 283 IPR013087 -
Csa04g01079 289 Gene3D - 81 147 IPR035896 -
Csa04g01079 289 ProSitePatterns Zinc finger C2H2 type domain signature. 224 245 IPR013087 -
Csa04g01079 289 Gene3D Classic Zinc Finger 188 288 - -
Csa04g01079 289 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 289 - -
Csa04g01079 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 288 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03897 Csa-Chr3:34202159 Csa04g01079 Csa-Chr4:8821165 4.59E-39 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31542 PF01428 zf-AN1 1.20E-08 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01079 - - csv:101212256 604.749