Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01079 | ATGGGAACCCCGGAATTCCCTAATCTCGGGAAGCATTGCAACTTTGCAGAATGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGCTGTCACCAGGTCTTCTGTTTGGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAGCAGATAGATGGGATGTCACCGTTGTCATTTGTCCGCTGTGTGCCAAAGGAGTTCGTCTCATTCCAGATCAAGATCCAAACATTACTTGGGAGATACATGTAAACACTGAATGTGACCCATCGAATTATGATAAAGTCACAAAGAAGAAAAAATGCCCTGTACCTGGCTGCAGGGAGTTGCTAACGTTTTCAAACACAATCAAATGTCGGGACTGCTCATTAGACCATTGTTTGAAGCATCGGTTTGGACCTGACCATAAATGTCCTGGACCAAAAAAACTCGAACCAACAGGTTTTCCATTTGTTGGTCTATTAAACAGAAGTAGAAAAGAAGAGAAAGGGCCTAAGAAAGCATTGTCCACCACATCCTCCTCTAAGTGGACTGCGTTCCTTAATGCAGCCTCATCTGTTAAAGCCTCAGCCGAAGCAAGCATGACGAAGTTGTCAAATGAATTCAGTCAAACTTGGATATCATCAGGTAGCAGCAGCAATGGGGGAGGTGGAAATGGACAAATTGAGCAATGTCCACAATGCAGTGCTAAGTTTTCATCAGTTTCGTCATTAATAGACCATGTTGAAAAAGTTCATGAAAGGGGTGGAAATCGAACTGGGCCGAAGAAGGTTGTGATCGATGCTTGTCCAAAGTGTAGTAGAGGATTTGTTGACCCTGTTGCCCTTGTGGAACATATTGAGAGGGATCATGGTGGCACTTCGAGAGCTTGA | 870 | 43.91 | MGTPEFPNLGKHCNFAECKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKADRWDVTVVICPLCAKGVRLIPDQDPNITWEIHVNTECDPSNYDKVTKKKKCPVPGCRELLTFSNTIKCRDCSLDHCLKHRFGPDHKCPGPKKLEPTGFPFVGLLNRSRKEEKGPKKALSTTSSSKWTAFLNAASSVKASAEASMTKLSNEFSQTWISSGSSSNGGGGNGQIEQCPQCSAKFSSVSSLIDHVEKVHERGGNRTGPKKVVIDACPKCSRGFVDPVALVEHIERDHGGTSRA* | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8821165 | 8823868 | - | CsaV3_4G011780.1 | Csa04g01079 | 526689 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01079 | 289 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 222 | 245 | IPR013087 | - | |
Csa04g01079 | 289 | SUPERFAMILY | AN1-like Zinc finger | 93 | 143 | IPR035896 | - | |
Csa04g01079 | 289 | ProSiteProfiles | Zinc finger AN1-type profile. | 7 | 55 | IPR000058 | GO:0008270 | |
Csa04g01079 | 289 | PANTHER | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED | 1 | 289 | - | - | |
Csa04g01079 | 289 | Pfam | C2H2-type zinc finger | 223 | 245 | - | - | |
Csa04g01079 | 289 | Gene3D | - | 2 | 58 | IPR035896 | - | |
Csa04g01079 | 289 | ProSiteProfiles | Zinc finger AN1-type profile. | 95 | 145 | IPR000058 | GO:0008270 | |
Csa04g01079 | 289 | SUPERFAMILY | AN1-like Zinc finger | 4 | 59 | IPR035896 | - | |
Csa04g01079 | 289 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 262 | 283 | IPR013087 | - | |
Csa04g01079 | 289 | SMART | AN1_Zf_4 | 13 | 52 | IPR000058 | GO:0008270 | |
Csa04g01079 | 289 | SMART | AN1_Zf_4 | 101 | 142 | IPR000058 | GO:0008270 | |
Csa04g01079 | 289 | Pfam | AN1-like Zinc finger | 13 | 51 | IPR000058 | GO:0008270 | |
Csa04g01079 | 289 | Pfam | AN1-like Zinc finger | 101 | 141 | IPR000058 | GO:0008270 | |
Csa04g01079 | 289 | SMART | c2h2final6 | 222 | 245 | IPR013087 | - | |
Csa04g01079 | 289 | SMART | c2h2final6 | 260 | 283 | IPR013087 | - | |
Csa04g01079 | 289 | Gene3D | - | 81 | 147 | IPR035896 | - | |
Csa04g01079 | 289 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 224 | 245 | IPR013087 | - | |
Csa04g01079 | 289 | Gene3D | Classic Zinc Finger | 188 | 288 | - | - | |
Csa04g01079 | 289 | PANTHER | ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 | 1 | 289 | - | - | |
Csa04g01079 | 289 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 260 | 288 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03897 | Csa-Chr3:34202159 | Csa04g01079 | Csa-Chr4:8821165 | 4.59E-39 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31542 | PF01428 | zf-AN1 | 1.20E-08 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01079 | - | - | csv:101212256 | 604.749 |