Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01082 ATGGAGGTCGATACTAATCCTGGGAAACCGTCGAAACAGATTGGGGGCGGCCAGGTTTGTCAGATCTGCAGTGATTCCGTTGGCACGACGGCCGACGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCATTTCCGGTCTGCCGTCCATGTTATGAGTACGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACTAAATACAAGTGGCATAAAGGAAGTCCTCCTGTTACTGGTGAGGCAGTAGAAGATGGTGATGGCAATGGAGTGGGAGGGGCACAAGAAAGGCATCATAAGATGCCAGAGCGCACCCTTAGCTGGGATACTAATTATGATAAAGAGGGATCTTTTAATCACATTCCTTTGCTCACCACTGGACGATCTGTTTCTGGAGAACTGTCAGCTGCATCTCCTGAGCGGCTGTCCATGGCCTCTCCTGAAAGCGGGAGCCGGGCTAACTATAGAATTATGGATCAATCAAGAGACTCGGGATCGGCTAGGTTTGGCAATGTGGCCTGGAAGGAGAGAATAGATAGTTGGAAGGTGAAGCAAGACAAGAGTGTGCCGCCAATGAGTGTCAGTCATGCACCTTCTGAAGGGAGGGGTGGTGCCGATTTTGATGCCAGCACTGATGTCGTGATCGATGATTCTTTACTAAATGACGAAGCTCGCCAGCCTCTATCGAGGAAGGTTTCTATTCCATCCTCTAGGATTAATCCTTATAGGATGGTCATCGTTCTCCGGCTTATTATTCTTTGCATCTTCTTGCACTATCGGATTACAAATCCAGTTCCAAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATTTGGTTTGCTATATCTTGGATTTTGGATCAGTTCCCCAAATGGCTCCCGGTTAATCGTGAGACATATCTTGATAGGCTTGCTCTGAGATATGATCGTGAAGGAGAGCCATCTCAGTTGGCTGCTGTTGACATATTTGTCAGTACTGTCGACCCTCTGAAAGAACCTCCCCTTGTCACTGCCAATACAGTCCTATCAATTCTCTCTGTGGACTATCCAGTTGATAAAGTTTCTTGCTACGTATCTGATGATGGAGCTGCTATGTTAACATTTGAAGCTTTGTCCGAAACCTCAGAGTTTGCTAGAAAATGGGTTCCTTTCTGCAAGAAGTACAGCATTGAGCCACGAGCACCAGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTTCAACCATCATTTGTGAAGGAGCGGAGAGCAATGAAGAGAGAATACGAGGAGTTTAAAATTCGTGTCAATGGACTTGTTGCTAAGGCACAGAAAATTCCTGATGAAGGGTGGGTCATGCAAGATGGCACCCCATGGCCTGGAAATAACACGAGAGATCATCCGGGAATGATACAGGTTTTCTTAGGGCACAGTGGAGGACTTGATACTGATGGTAATGAGCTTCCACGTTTAGTTTATGTTTCTCGTGAGAAGCGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCTCTTGTTCGCGTATCTGCTGTTCTTACCAACGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAGGCGTTGCGGGAAGCTATGTGTTTTATGATGGATCCTAATCTTGGTAAATCAGTTTGCTATGTTCAGTTTCCTCAGAGGTTTGATGGAATTGATAGAAACGATCGATATGCCAACCGAAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGTATCCAAGGTCCAGTTTATGTGGGAACGGGATGTGTTTTCAATCGAACTGCGCTGTACGGCTATGAGCCCCCACTCAAGCCCAAGCATAAAAAGGCAGGGGTATTCTCCAGTTGCTTTGGGAAATCGAAAAAGAAAAGTTCTAAGTCAAAAAGAAAGGATTCTGACAAGAAGCAATCTAGTAAAAATGTTGATCCCACGGTGCCAATATTCAACCTCGAAGATATTGAGGAAGGAGTTGAAGGTGCTGGGTTTGATGACGAGAAATCACTACTAATGTCGCAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCTGTATTTGTTGCTTCCACACTAATGGAAAATGGTGGTGTGCCGCAATCTGCCACTCCAGAATCTCTCCTTAAAGAAGCAATTCATGTCATCAGTTGTGGATACGAGGATAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCCGTCACAGAAGATATTTTGACAGGGTTCAAGATGCATGCCCGTGGCTGGAGATCAATCTACTGCATCCCAGACCGTCCTGCATTTAAAGGATCTGCTCCCATTAATCTTTCTGATCGTCTTAACCAAGTGCTTCGGTGGGCGTTAGGTTCGGTTGAAATTCTTTTCAGTCGGCATTGTCCTGTATGGTACGGTTATGGTGGACGGTTGAAATGGCTTGAGAGATTTGCTTATGTTAACACCACCATTTATCCAATAACATCCATTCCTCTTCTTGCCTATTGTACCTTACCTGCCATATGTTTACTCACGGGAAAGTTTATCATTCCTCAGATCAGCAATCTTGCTAGCATCTGGTTCATCTCTCTCTTTCTTTCCATCTTTGCTACCGGTATTCTGGAAATGAGATGGAGTGGTGTTGGAATCGATGAATGGTGGAGAAACGAACAATTCTGGGTTATTGGAGGTGTGTCGGCCCATCTTTTCGCTGTCTTCCAAGGTCTTCTTAAAGTTCTTGCTGGAATCGATACAAACTTCACGGTTACTTCGAAAGCGTCCGACGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAGTGGACCACTCTTCTGATTCCCCCAACTACTCTCCTAATTATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCGATCAACAGTGGTTATCAATCTTGGGGACCCCTTTTCGGGAAACTGTTCTTCGCTTTCTGGGTGATTATTCATCTGTATCCCTTCCTTAAGGGTCTGATGGGTCGCCAGAACCGAACACCCACAATCGTGGTTGTATGGTCTATCCTCCTTGCCTCAATCTTCTCCCTTTTATGGGTTCGGATCGATCCCTTCACAACTCGGGTAACTGGTCCTGATGTCGAACAGTGTGGAATCAACTGTTAA 3153 45.0 MEVDTNPGKPSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVTGEAVEDGDGNGVGGAQERHHKMPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVPNAFALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKIRVNGLVAKAQKIPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKAGVFSSCFGKSKKKSSKSKRKDSDKKQSSKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPVWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC* 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8832210 8838522 - CsaV3_4G011810.1 Csa04g01082 526692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01082 1050 PANTHER CELLULOSE SYNTHASE 16 1050 - -
Csa04g01082 1050 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Csa04g01082 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 16 1050 - -
Csa04g01082 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 462 613 IPR029044 -
Csa04g01082 1050 SUPERFAMILY RING/U-box 9 87 - -
Csa04g01082 1050 MobiDBLite consensus disorder prediction 73 99 - -
Csa04g01082 1050 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
Csa04g01082 1050 Pfam Cellulose synthase 322 1043 IPR005150 GO:0016020|GO:0016760|GO:0030244
Csa04g01082 1050 MobiDBLite consensus disorder prediction 631 656 - -
Csa04g01082 1050 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Csa04g01082 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 92 IPR013083 -
Csa04g01082 1050 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 853 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02307 Csa-Chr1:20190683 Csa04g01082 Csa-Chr4:8832210 0 dispersed
Csa02g00702 Csa-Chr2:5678171 Csa04g01082 Csa-Chr4:8832210 0 dispersed
Csa03g04345 Csa-Chr3:37966161 Csa04g01082 Csa-Chr4:8832210 0 dispersed
Csa04g01082 Csa-Chr4:8832210 Csa07g02016 Csa-Chr7:19667913 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01082 K10999 - csv:101211779 2135.92