Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01102 ATGGCTTCCAATTTCTGGTCCTTAGCATGTATTCGTAGTCCCAACACCACCAATCTCTCTCCACGCCCTCATTATCCCTCTATGCCCAAATACCCAGCTGGGGTTTCCCAGCCCGAGAATAGCTTACCGGTGATCGAGTCCACCGCTTTTTTCTCCGTCACCGGAATGACCTGCTCTGCTTGTGCTGGCTCTGTCGAGAAAGCCATCAAACGTCTTCCTGGGATTCGTGAAGCCGTCGTTGGTGTTTTGAATGCCAAAGCTCGTGTCCAGTTTTACCCTAGCTTCGTTAATGTGGATCAAATATGTGAGGCAATTAATGATGCAGGCTTTGAAGCAAGTGTTGTCAATGATGATATGATTGAAAGATGTCGAATTCGTGTAATTGGGATGACTTGCACTTCGTGTTCCACAACTTTGGAATCTACATTACTAGCAATTGGTGGAGTTCAAAACGCTCAAGTTGCATTAGCCACGGAAGAAGCAGAAATTTGTTATGATCCAAGGATTTTGAACTACAATCAACTTCTCCAAGCCATTGAAGATTCTGGATTTGAAGCTATACTTATTAGTACAGAAGAAGATGTCAGCAAGATACAGCTCCATGTTGAGGGAGTAAGAACTGAGAATTCAATGAGATTGATTGGGAGCTCTCTGGAAGCTCTTCCTGGAGTCTTAGGTATTGATATTGAACCTGCCGTCAATAAACTTTCCTTGTCTTATAAACCAAATATCACGGGACCTCGGAATGTAATCCAAGTGATTGAATCAACTGGATCGGGTCGATACAAGGCAACAATATTTCCTGAAGGAGAGGGCAGAGAAGCTTATAAAAAGGAGGAAATTAAGCAATATTACAGATCGTTCTTATGGAGCCTGATATTTACAATTCCAGTATTCCTAAGCTCCATGGTCTTCACTTATATACCTGGTATTAAGGAAGGGCTAGATACTAAAGTTGTCAATATGATGACTGTTGGAGAGCTGCTGAGATGGGTGTTATCAACTCCTGTACAGTTCATTATTGGACGGCGGTTCTATACTGGGTCTTATAAAGCATTGCGTCATGGTTCTGCAAATATGGATGTCTTGATTGCTTTGGGGACAAATGCAGCATACTTTTATTCAGTCTACATGGTCTTAAGATCTGCAACCTCAAGTGATTTTAAGGCCACGGACTTCTTTGAGACCAGTTCCATGCTTATTTCATTCATTCTCCTTGGGAAATATCTTGAGGTCTTGGCAAAGGGAAAGACATCAGAGGCTATTGCCAAGCTTATGAAGTTGGTGCCTGAAACAGCGACGCTGCTTACTTTTGATGATGATGGACATATCATTAGGGAAGAAGAAATTGATAGTCGGTTGATACAAAAGAATGATGTGATTAAAGTCATTCCAGGGGCAAAAGTTGCTTCAGATGGAATTGTTGTTTGGGGACAAAGTCATGTCAATGAAAGCATGATTACTGGGGAAGCCAAGCCAGTGGCAAAAAGAAAGGATGATACAGTGATTGGAGGCACCTTGAACGAGAACGGGGTGCTACATGTGAGAGCAACACATGTTGGATCTGAAAGTGCTCTTTCACAGATTGTGCGACTTGTTGAATCCGCTCAGATGGCCAAGGCTCCTGTACAGAAAATTGCAGATCGCATCTCTAAGGTTTTTGTGCCAATGGTAATAGTTCTTTCATTGACAACGTGGCTCGTCTGGTTCCTCACTGGGAAGTATGGTGGCTACCCAAGGACTTGGATACCTTCTTCTATGGATAGCTTTGAACTTGCTCTCCAGTTTGGTATCTCAGTTATGGTCATAGCATGCCCTTGTGCTTTGGGCCTGGCAACTCCAACCGCTGTCATGGTTGGAACAGGAGTTGGGGCATCAAAAGGTGTTTTAATCAAAGGCGGCCAAGCATTAGAGAGTGCTCACAAGGTGAATTGCATTGTGTTTGACAAGACTGGAACTCTTACAGTCGGGAAGCCAGTTGTGGTGAACACCAAGCTACTTAAAAATATGGCTTTGAAAGAATTCTGTGTACTAGTCGCCGCCACTGAGGTTAACAGTGAGCATCCACTGGCTAAAGCCGTTGTCGAATATGCTCAAAAGTTCAAAGAAGAAGATGATAACAAAACTTGGCCTGAAGCACAAGACTTTATCTCCATTACTGGACATGGAGTTAAGGCCATCGTTCAAAACAAAGAAGTACTTGTAGGCAACAAGAGTCTTATGTTAGATCAGAACATCTTGATACCTATTGAAGCTGAAGAAATATTAAAAGAAATTGAAGAAATGGCGCAAACTGGAATTTTGATATCCATTGATAGGAAATTGACAGGAGTTCTTGCCATATCTGATCCACTAAAACCAAGTGCTCGAGAGGTCATTTCGATACTCAAGGCCATGAAAGTTAAATCTATCATGGTGACAGGTGATAATTGGGGAACTGCAAAGTCCATAGCCAAAGAGGTTGGGATTGATGATGTAACTGCAGAAGCTAAACCTGACCAGAAAGCTGATGAAGTGAAGAGATTACAGTCTTTGGGTCATACGGTGGCAATGGTTGGAGACGGTATCAACGACTCACCAGCACTTGTGGCTGCAGATGTTGGAATGGCAATTGGTGCAGGCACAGACATCGCCATTGAGGCAGCTGACATCGTTCTCATGAAAAGCAACTTAGAGGATGTCATAACCGCCATCGACCTTTCGAGGAAAACCTTTTCTAGGATCCGTCTAAACTACATTTGGGCGCTCGGTTACAATCTCCTCGGCATCCCTATCGCAGCAGGAGTCCTATTCCCATCAACTCGGTTTCGGTTACCACCATGGATTGCAGGAGCAGCAATGGCAGCCTCTTCTGTGAGTGTTGTTTGTAGTTCTCTCCTTCTCAAGTATTACAAAAGACCTAAGAAGCTTGATACACTTGAGATACAAGGCATTAGAGTTGAGTGA 2946 43.31 MASNFWSLACIRSPNTTNLSPRPHYPSMPKYPAGVSQPENSLPVIESTAFFSVTGMTCSACAGSVEKAIKRLPGIREAVVGVLNAKARVQFYPSFVNVDQICEAINDAGFEASVVNDDMIERCRIRVIGMTCTSCSTTLESTLLAIGGVQNAQVALATEEAEICYDPRILNYNQLLQAIEDSGFEAILISTEEDVSKIQLHVEGVRTENSMRLIGSSLEALPGVLGIDIEPAVNKLSLSYKPNITGPRNVIQVIESTGSGRYKATIFPEGEGREAYKKEEIKQYYRSFLWSLIFTIPVFLSSMVFTYIPGIKEGLDTKVVNMMTVGELLRWVLSTPVQFIIGRRFYTGSYKALRHGSANMDVLIALGTNAAYFYSVYMVLRSATSSDFKATDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMKLVPETATLLTFDDDGHIIREEEIDSRLIQKNDVIKVIPGAKVASDGIVVWGQSHVNESMITGEAKPVAKRKDDTVIGGTLNENGVLHVRATHVGSESALSQIVRLVESAQMAKAPVQKIADRISKVFVPMVIVLSLTTWLVWFLTGKYGGYPRTWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASKGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVNTKLLKNMALKEFCVLVAATEVNSEHPLAKAVVEYAQKFKEEDDNKTWPEAQDFISITGHGVKAIVQNKEVLVGNKSLMLDQNILIPIEAEEILKEIEEMAQTGILISIDRKLTGVLAISDPLKPSAREVISILKAMKVKSIMVTGDNWGTAKSIAKEVGIDDVTAEAKPDQKADEVKRLQSLGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLLLKYYKRPKKLDTLEIQGIRVE* 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9299082 9308750 - CsaV3_4G012010.1 Csa04g01102 526712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01102 981 Gene3D - 614 909 IPR023214 -
Csa04g01102 981 Pfam haloacid dehalogenase-like hydrolase 643 866 - -
Csa04g01102 981 SFLD p-type atpase 629 904 IPR044492 -
Csa04g01102 981 ProSiteProfiles Heavy-metal-associated domain profile. 122 188 IPR006121 GO:0046872
Csa04g01102 981 SUPERFAMILY Calcium ATPase, transmembrane domain M 392 920 IPR023298 -
Csa04g01102 981 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 400 934 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g01102 981 CDD P-type_ATPase_Cu-like 286 948 - -
Csa04g01102 981 CDD HMA 51 113 IPR006121 GO:0046872
Csa04g01102 981 ProSitePatterns E1-E2 ATPases phosphorylation site. 649 655 IPR018303 -
Csa04g01102 981 Gene3D - 415 537 - -
Csa04g01102 981 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Csa04g01102 981 Gene3D - 654 731 IPR023299 GO:0000166
Csa04g01102 981 Gene3D - 732 783 IPR023299 GO:0000166
Csa04g01102 981 Gene3D - 195 268 - -
Csa04g01102 981 SUPERFAMILY HMA, heavy metal-associated domain 192 260 IPR036163 GO:0046872
Csa04g01102 981 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 360 961 IPR027256 GO:0006812|GO:0016021|GO:0019829
Csa04g01102 981 ProSiteProfiles Heavy-metal-associated domain profile. 48 114 IPR006121 GO:0046872
Csa04g01102 981 SUPERFAMILY HAD-like 646 958 IPR036412 -
Csa04g01102 981 Pfam E1-E2 ATPase 428 626 - -
Csa04g01102 981 SFLD C1.7: P-type atpase like 629 904 - -
Csa04g01102 981 TIGRFAM TIGR00003: copper ion binding protein 51 112 IPR006122 GO:0005507
Csa04g01102 981 CDD HMA 125 186 IPR006121 GO:0046872
Csa04g01102 981 Gene3D - 120 193 - -
Csa04g01102 981 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 972 - -
Csa04g01102 981 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Csa04g01102 981 PRINTS P-type cation-transporting ATPase superfamily signature 647 661 - -
Csa04g01102 981 PRINTS P-type cation-transporting ATPase superfamily signature 777 788 - -
Csa04g01102 981 PRINTS P-type cation-transporting ATPase superfamily signature 799 809 - -
Csa04g01102 981 PRINTS P-type cation-transporting ATPase superfamily signature 852 871 - -
Csa04g01102 981 PRINTS P-type cation-transporting ATPase superfamily signature 875 887 - -
Csa04g01102 981 Pfam Heavy-metal-associated domain 51 111 IPR006121 GO:0046872
Csa04g01102 981 Pfam Heavy-metal-associated domain 125 185 IPR006121 GO:0046872
Csa04g01102 981 ProSiteProfiles Heavy-metal-associated domain profile. 197 258 IPR006121 GO:0046872
Csa04g01102 981 ProSitePatterns Heavy-metal-associated domain. 127 156 IPR017969 GO:0046872
Csa04g01102 981 SUPERFAMILY HMA, heavy metal-associated domain 121 192 IPR036163 GO:0046872
Csa04g01102 981 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Csa04g01102 981 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Csa04g01102 981 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Csa04g01102 981 PRINTS Copper-transporting ATPase 1 signature 145 166 - -
Csa04g01102 981 Gene3D - 44 115 - -
Csa04g01102 981 PANTHER ATP7, ISOFORM B 1 972 - -
Csa04g01102 981 SUPERFAMILY HMA, heavy metal-associated domain 48 117 IPR036163 GO:0046872
Csa04g01102 981 SUPERFAMILY Calcium ATPase, transduction domain A 447 533 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01102 Csa-Chr4:9299082 Csa05g00291 Csa-Chr5:1823864 0 dispersed
Csa04g01102 Csa-Chr4:9299082 Csa01g02172 Csa-Chr1:18849770 1.74E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01102 K17686 - csv:101218801 1853.57