Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01137 ATGAACGACTTAATGACCAAATCGTTCACAAGCTATGTGGATCTGAAGAAGGCAGCCATGAAGGATCTCGACCTTGAAGCCGGTCTAGAAAAGGCATCATCTGTTACCGGCGACAACGGTGACATGGGTCTGTTTCTGGAAGAGGCAGAGAAGGTGAAAACGGAGATGGGTTCGATTAGAGAGATTTTAGTTAAACTCCAACAAGCTAATGAAGAGACCAAATCTGCTCACAAACCTGAAACCCTCAAATTGCTTCGTAATGCGATCAATGTTGACATTGTCACTGTCCTCAAAAAGGCAAGATCGATCCGATCTCAGCTTGAGGAAATGGATCGTGCCAACGCTGCCAAGAAACGTCTCTCCGGCAGCAAAGAAGGCACTGCCATTTACAGGACAAGAATTGCAGTGACCAACGGGCTACGGAAGAAGCTAAAGGAATTAATGATGGAGTTTCAAAGCTTGAGGCAGAGGATGATGACGGAGTACAAAGAAACGGTTGGGCGCCGATACTTCACGGTGACGGGGGAGCATCCGGAGGAGGAGGTAATAGAGAAGATAATATCGAATGGGGGGGAGGAGTTTTTAGCAAGGGCAATAGAGGAGCATGGGCGAGGGAAGGTGGCAGAGACGGTGGTGGAGATACAGGACCGACATGGGGCCGCGAAGGAGATAGAGAAGAGCTTGTTAGAGCTACACCAAGTGTTTTTGGATATGGCAGTCATGGTTGAAGCACAAGGGGAGAAAATGGATGATATTGAACATCACGTTATGAATGCTTCGCAATATGTTATAGATGGGACCAAGGATTTGAAAACAGCAAAGGATTTGCAAAGGAATAGTAGAAAATGTTTGTGTTTTGGGATTTTGCTTTTGCTTGTGATTATTTTGGTTGTTGTTATTCCAATTGCTGTTAGTTTTGGAAGTTCTTGA 930 45.38 MNDLMTKSFTSYVDLKKAAMKDLDLEAGLEKASSVTGDNGDMGLFLEEAEKVKTEMGSIREILVKLQQANEETKSAHKPETLKLLRNAINVDIVTVLKKARSIRSQLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEHPEEEVIEKIISNGGEEFLARAIEEHGRGKVAETVVEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVIDGTKDLKTAKDLQRNSRKCLCFGILLLLVIILVVVIPIAVSFGSS* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9688071 9689626 - CsaV3_4G013350.1 Csa04g01137 526747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01137 309 Pfam Syntaxin 45 246 IPR006011 GO:0016020
Csa04g01137 309 PANTHER SYNTAXIN 4 302 IPR045242 -
Csa04g01137 309 CDD SNARE_syntaxin1-like 210 272 - -
Csa04g01137 309 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 302 - -
Csa04g01137 309 ProSitePatterns Syntaxin / epimorphin family signature. 217 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Csa04g01137 309 SMART tSNARE_6 206 273 IPR000727 -
Csa04g01137 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Csa04g01137 309 CDD SynN 42 198 IPR006011 GO:0016020
Csa04g01137 309 SMART SynN_4 37 163 IPR006011 GO:0016020
Csa04g01137 309 Gene3D - 37 166 - -
Csa04g01137 309 SUPERFAMILY t-snare proteins 41 266 IPR010989 GO:0016020|GO:0016192
Csa04g01137 309 Gene3D - 206 307 - -
Csa04g01137 309 Pfam SNARE domain 248 299 IPR000727 -
Csa04g01137 309 Coils Coil 137 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01137 Csa-Chr4:9688071 Csa06g03248 Csa-Chr6:27399246 3.39E-78 dispersed
Csa04g01137 Csa-Chr4:9688071 Csa03g03501 Csa-Chr3:31360235 3.89E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01137 K08486 - csv:101220775 580.096