Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01138 ATGATTGATTCTATCAAGGCTGCGATCGGCGATGCCGTTCTCACTTCCATGTGGATTTTCTGTGCTTCATCTCTTGGGGTTCTCACTTCCGTTCTCTACTCAGCCGCCGGTGTTTATGGAATCCCACTTCACCCACTTCTTATCACTACTACTCTTGTTTTCATTCTTGTTTTTGTTTTTAATATAATTGGTGCTCTTTTGGGTGGAGCTAGCTTTAATCCTACTGCCACTGCTGCTTTTTATGCTGCTGGTGTTGGTCCAACCTCTCTCTTCGCCATGGCTATCCGTTTCCCTGCTCAGGCGGCTGGTGCGGTTGCTGGTGCCCTGGCAATCAAGGAGGTGATGCCTATACAATACAAGCACATGCTTGGTGGACCTTCTTTGAAAGTTGACATTCATTCTGGAGCTACAGCTGAAGGAGTTTTGACCTTTATAATCAGTTTTGCTGTTCTTCTAATTGTACTCAGGGGTCCCTCCAGCCCTGTTATCAAAACATGGTTGCTGGCAATGGCTACCGTAGCGTTAATCGTTGCTGGTTCTAGTTACACAGGACCTTCCATGAATCCTGCAAATGCATTTGGATGGGCATATATAAACAACAGGCACGATACATGGGAGCAGTTGTACGTGTACTGGATCTCCCCCTTTGTAGGAGCCATTTTGGCTGCTTGGCTTTTCAGAATGATCTTCCCACCACCACCCCCAGCCCCGGCCAAGCAGAAGAAAGCTTAA 732 47.13 MIDSIKAAIGDAVLTSMWIFCASSLGVLTSVLYSAAGVYGIPLHPLLITTTLVFILVFVFNIIGALLGGASFNPTATAAFYAAGVGPTSLFAMAIRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDIHSGATAEGVLTFIISFAVLLIVLRGPSSPVIKTWLLAMATVALIVAGSSYTGPSMNPANAFGWAYINNRHDTWEQLYVYWISPFVGAILAAWLFRMIFPPPPPAPAKQKKA* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9698165 9702490 + CsaV3_4G013360.1 Csa04g01138 526748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01138 243 Pfam Major intrinsic protein 3 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g01138 243 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g01138 243 PRINTS Major intrinsic protein family signature 53 77 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g01138 243 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g01138 243 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g01138 243 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g01138 243 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa04g01138 243 PANTHER AQUAPORIN SIP1-1 3 242 - -
Csa04g01138 243 Gene3D Glycerol uptake facilitator protein. 2 235 IPR023271 -
Csa04g01138 243 PANTHER AQUAPORIN SIP1-1 3 242 IPR044222 GO:0015250
Csa04g01138 243 SUPERFAMILY Aquaporin-like 4 239 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01138 Csa-Chr4:9698165 Csa05g02810 Csa-Chr5:28635798 3.55E-13 dispersed
Csa04g01138 Csa-Chr4:9698165 Csa03g03271 Csa-Chr3:29893968 2.91E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01138 K09875 - csv:101220534 426.017