Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01138 | ATGATTGATTCTATCAAGGCTGCGATCGGCGATGCCGTTCTCACTTCCATGTGGATTTTCTGTGCTTCATCTCTTGGGGTTCTCACTTCCGTTCTCTACTCAGCCGCCGGTGTTTATGGAATCCCACTTCACCCACTTCTTATCACTACTACTCTTGTTTTCATTCTTGTTTTTGTTTTTAATATAATTGGTGCTCTTTTGGGTGGAGCTAGCTTTAATCCTACTGCCACTGCTGCTTTTTATGCTGCTGGTGTTGGTCCAACCTCTCTCTTCGCCATGGCTATCCGTTTCCCTGCTCAGGCGGCTGGTGCGGTTGCTGGTGCCCTGGCAATCAAGGAGGTGATGCCTATACAATACAAGCACATGCTTGGTGGACCTTCTTTGAAAGTTGACATTCATTCTGGAGCTACAGCTGAAGGAGTTTTGACCTTTATAATCAGTTTTGCTGTTCTTCTAATTGTACTCAGGGGTCCCTCCAGCCCTGTTATCAAAACATGGTTGCTGGCAATGGCTACCGTAGCGTTAATCGTTGCTGGTTCTAGTTACACAGGACCTTCCATGAATCCTGCAAATGCATTTGGATGGGCATATATAAACAACAGGCACGATACATGGGAGCAGTTGTACGTGTACTGGATCTCCCCCTTTGTAGGAGCCATTTTGGCTGCTTGGCTTTTCAGAATGATCTTCCCACCACCACCCCCAGCCCCGGCCAAGCAGAAGAAAGCTTAA | 732 | 47.13 | MIDSIKAAIGDAVLTSMWIFCASSLGVLTSVLYSAAGVYGIPLHPLLITTTLVFILVFVFNIIGALLGGASFNPTATAAFYAAGVGPTSLFAMAIRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDIHSGATAEGVLTFIISFAVLLIVLRGPSSPVIKTWLLAMATVALIVAGSSYTGPSMNPANAFGWAYINNRHDTWEQLYVYWISPFVGAILAAWLFRMIFPPPPPAPAKQKKA* | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 9698165 | 9702490 | + | CsaV3_4G013360.1 | Csa04g01138 | 526748 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01138 | 243 | Pfam | Major intrinsic protein | 3 | 226 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa04g01138 | 243 | PRINTS | Major intrinsic protein family signature | 6 | 25 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa04g01138 | 243 | PRINTS | Major intrinsic protein family signature | 53 | 77 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa04g01138 | 243 | PRINTS | Major intrinsic protein family signature | 92 | 111 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa04g01138 | 243 | PRINTS | Major intrinsic protein family signature | 138 | 156 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa04g01138 | 243 | PRINTS | Major intrinsic protein family signature | 169 | 191 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa04g01138 | 243 | PRINTS | Major intrinsic protein family signature | 209 | 229 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa04g01138 | 243 | PANTHER | AQUAPORIN SIP1-1 | 3 | 242 | - | - | |
Csa04g01138 | 243 | Gene3D | Glycerol uptake facilitator protein. | 2 | 235 | IPR023271 | - | |
Csa04g01138 | 243 | PANTHER | AQUAPORIN SIP1-1 | 3 | 242 | IPR044222 | GO:0015250 | |
Csa04g01138 | 243 | SUPERFAMILY | Aquaporin-like | 4 | 239 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01138 | Csa-Chr4:9698165 | Csa05g02810 | Csa-Chr5:28635798 | 3.55E-13 | dispersed | |
Csa04g01138 | Csa-Chr4:9698165 | Csa03g03271 | Csa-Chr3:29893968 | 2.91E-13 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01138 | K09875 | - | csv:101220534 | 426.017 |