Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01139 ATGCATAAGCGTTCTGGGAAGCCACAGTCCGAATCTTTTTCGAATAAGATCTATAGATTTAGAGGGGTGTTATTGCTTATCTCTCTTTCTCTTTTCTTAATCGCTTTTGTTCTTTATCTCATGCCGGCCCGTGAGGATTACTCTTTCAACCACCGCAAAGTTTCCCCTGATCATAAGTCGTCTTCCTCTTCCAAGACCTCTTTTGCTGTTATTTTCGATGCTGGTAGCTCTGGGAGTCGTGTCCATGTCTTTTGCTTTGATCATAATCTCGATCTCCTCCCCGTTGGCAAGGATATCGAACTTTTCTTACAACTTAAACCAGGACTGAGTGCATATGCTGACAGCCCCAAGGATGCGGCAGCCTCTCTAATTTCCCTTTTGGACAAAGCTCAAGATGTGGTTCCAAAAGGGCTGCGCCCAATGACTCCTGTTAGAGTTGGGGCAACTGCTGGCTTGAGGGCCTTGAAAGGTGATGCATCTGATAGAATTTTGCAGGCGGTTAGGGATCTCCTGAGAGACAAAAGCGAACTCAGGTTGGAAGGAGATGCTGTGTCTGTCATTGATGGAACTCAAGAAGGTTCTTATCTTTGGGTGACGTTAAACTATCTGCTTGGGAACTTGGGTAAGAAGTATTCAGATACAGTCGGAGTTGTAGATCTTGGAGGAGGATCTGTTCAAATGGCATATGCTATCTCAGAAAATGATGCTGCTCGATTATCAGAGGCAGAGGGTGCATACGTAAAAAAGATGTATCTGAAGGGAGCAACTTATTATCTCTATGTTCACAGTTATTTGCATTATGGGTTACTAGCTGCCCGAGCGGAGGTTTTGAGTGTTTCTGAAGATTCTAGCAATGATTGCATCCTATCTGGCTACGAAGGAGAATACCATTATGGGGGAAAGGACTACAAAGCATCGGCATCTTCATCAGGGTCTAACTTGAATGGATGCAGGAGCACGGTTTTGAAGGCTCTCAAGGTTAACGAATCCACTTGTACTCACATGAAGTGCACTTTTGGCGGTGTTTGGAATGGCGGAGGAGGAGATGGCCAGAAGAATCTCTTCGTTGCTTCATTTTTCTTTGACAGGGCAGCTGAGGCTGGTTTTGCTGATCCCAATGAGCCGGTTGCTATAGTTCGCCCGGCAGACTTCAACGATGCAGCAAAGCAGGCATGCCAAATTAAAGTTGAGGATGCCAGTACATATCCCCATGTCGAGAAGGATAACCTGCCGTATTTGTGTATGGATCTTGTGTATCAGTACACACTACTCGTAGATGGATTTGGGTTGGATCCATGGCAAGAGATCACATTGGTGAAGAAGGTTAAATATCAGAACTCCTTGGTTGAAGCAGCATGGCCTCTAGGTAGCGCCATCGAAGCTGTCTCGTCGTTAGTGTAA 1401 45.47 MHKRSGKPQSESFSNKIYRFRGVLLLISLSLFLIAFVLYLMPAREDYSFNHRKVSPDHKSSSSSKTSFAVIFDAGSSGSRVHVFCFDHNLDLLPVGKDIELFLQLKPGLSAYADSPKDAAASLISLLDKAQDVVPKGLRPMTPVRVGATAGLRALKGDASDRILQAVRDLLRDKSELRLEGDAVSVIDGTQEGSYLWVTLNYLLGNLGKKYSDTVGVVDLGGGSVQMAYAISENDAARLSEAEGAYVKKMYLKGATYYLYVHSYLHYGLLAARAEVLSVSEDSSNDCILSGYEGEYHYGGKDYKASASSSGSNLNGCRSTVLKALKVNESTCTHMKCTFGGVWNGGGGDGQKNLFVASFFFDRAAEAGFADPNEPVAIVRPADFNDAAKQACQIKVEDASTYPHVEKDNLPYLCMDLVYQYTLLVDGFGLDPWQEITLVKKVKYQNSLVEAAWPLGSAIEAVSSLV* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9703914 9709124 + CsaV3_4G013370.1 Csa04g01139 526749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01139 466 Gene3D Exopolyphosphatase. Domain 2 188 443 - -
Csa04g01139 466 PANTHER APYRASE-LIKE PROTEIN 9 464 - -
Csa04g01139 466 CDD NBD_sugar-kinase_HSP70_actin 70 250 - -
Csa04g01139 466 Pfam GDA1/CD39 (nucleoside phosphatase) family 63 464 IPR000407 GO:0016787
Csa04g01139 466 Gene3D - 68 459 - -
Csa04g01139 466 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 187 202 IPR000407 GO:0016787
Csa04g01139 466 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 9 464 IPR000407 GO:0016787
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00850 Csa-Chr2:7820076 Csa04g01139 Csa-Chr4:9703914 2.03E-43 dispersed
Csa04g00717 Csa-Chr4:4909727 Csa04g01139 Csa-Chr4:9703914 6.75E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01139 K14641 - csv:101220305 895.575