Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01150 ATGGCAGAATTAGATCAAGTACTTGACCCTCCTCCCTATTTTCTCTGTCCCATCTCCTTCCAAATCATGAAAGATCCCGTTACAGTCGCCTCTGGCATAACCTACGACCGTGAAAGCATCGAGAAATGGTTGCTTTCTCACAAACACAACACATGCCCCGTCTCACACATAGTTTTATCCCACTTCCACATCACTCCCAACCATACCTTAAGACGAGTCATTCAAGCTTGGTGCACTCTCAATGCTTCTAAAGGCGTAGAGAGGATACCCACGCCGAAGCCCCCAGTCGACCGGGAGCAAGTCGTTCGGATTCTTGCCCATGCTAACTTATCTCCATTCTCTCAAAAGAATTCTCTTTGTCGCCTTCGATCTATTGCTACGGCAAATGAAAGTAATAAACGTTGCATGGAATCTGCTGGAGTTGTGGAGTTCTTGGCTGGGGTTGTGTGTAATAATTCTACCACCAACATGGAGTATGGCTTAGAAGATTACGCGTTTGACGACATGTCCGCAAATTCAGCCGATGAGGCTTTGCTCATTCTTCACAAACTCCAAGTCTCCGAATCCTCTCTAAAATTTCTCCTCTCCAACAATGGCGGCATCTTCGTCTCCACTTTAACCAAAATCTTACAAAACCGAAGCTATTCCTCTAGATCATATTCAGTAATGCTTCTTAATTCAATGTTCCAAGTCGCAGATCAGATTCAAATTCAAAATCTCACCGCCGATTTCTTCACCGAAATCATCCAAATCCTCAAAGATCAGATATCCAAACAAGCCTCCAAATCGGCATTGAAATTGCTAATCGCCGTCTCTTCTAGTTTCAGAAACAGAGTAAAGGCGGTTCAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTCCTCGATCTCGATTCATCCGAGAATAAGCGTTTGTGCGAAATGATTCTCGTACTGCTGGATCTGCTTTGCAGCTGTGCCGATGGCAGGGCGGAGCTGTTGAATCACGCGGCGGGGATCGCCGTGGTGTCGAAGAAGATTCTGAGAGTTTCGTCGGTTGGAAGTGAGAAAGCGGTTGGGATCTTGTGGTCTGTTGCGAAATTCTCGGGGAGTCAAAGCGTGGTTCAGGAAATGGTGCGGATTGGTGTTGTGACGAAGCTTTGTTTTGTGCTTCAGGTGGTGGGGGCCGGAGTGAAAGCGAAGGAGAAAGCTAAAGAGATTTTGAAGCTTCATGGTCGGACATGGCGGAATTCCTCGTGTTTGCCTTCGACTTTGCGATCAGCTTATCCACAATAA 1275 46.82 MAELDQVLDPPPYFLCPISFQIMKDPVTVASGITYDRESIEKWLLSHKHNTCPVSHIVLSHFHITPNHTLRRVIQAWCTLNASKGVERIPTPKPPVDREQVVRILAHANLSPFSQKNSLCRLRSIATANESNKRCMESAGVVEFLAGVVCNNSTTNMEYGLEDYAFDDMSANSADEALLILHKLQVSESSLKFLLSNNGGIFVSTLTKILQNRSYSSRSYSVMLLNSMFQVADQIQIQNLTADFFTEIIQILKDQISKQASKSALKLLIAVSSSFRNRVKAVQAGAVPVLIDLLLDLDSSENKRLCEMILVLLDLLCSCADGRAELLNHAAGIAVVSKKILRVSSVGSEKAVGILWSVAKFSGSQSVVQEMVRIGVVTKLCFVLQVVGAGVKAKEKAKEILKLHGRTWRNSSCLPSTLRSAYPQ* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9818244 9820090 - CsaV3_4G013480.1 Csa04g01150 526760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01150 424 SUPERFAMILY ARM repeat 102 385 IPR016024 -
Csa04g01150 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 8 423 - -
Csa04g01150 424 PANTHER WDSAM1 PROTEIN 8 423 IPR045185 GO:0061630
Csa04g01150 424 SMART Ubox_2 13 77 IPR003613 GO:0004842|GO:0016567
Csa04g01150 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 89 IPR013083 -
Csa04g01150 424 CDD RING-Ubox_PUB 14 56 IPR045210 -
Csa04g01150 424 Gene3D - 98 405 IPR011989 -
Csa04g01150 424 SUPERFAMILY RING/U-box 7 82 - -
Csa04g01150 424 Pfam U-box domain 11 79 IPR003613 GO:0004842|GO:0016567
Csa04g01150 424 ProSiteProfiles U-box domain profile. 9 84 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01016 Csa-Chr3:8175567 Csa04g01150 Csa-Chr4:9818244 2.89E-65 dispersed
Csa04g01150 Csa-Chr4:9818244 Csa06g02471 Csa-Chr6:21988228 4.18E-130 dispersed
Csa04g01150 Csa-Chr4:9818244 Csa03g03495 Csa-Chr3:31295374 4.93E-149 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01150 - - csv:101205757 798.119