Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01154 ATGGCTGCTTACGCTTTGCTCAACGATTCCACCCCCCGTGGTGTTAATGGCGGTTTTGATGATAGTCCTTTGACTAGTGCTTCCACTAATAGCAACGGTAGTGACGAACTTAATCATCAACAGATTGTTCAGGTTCCTCAACCAAGATTGCCGGTTGGAAAAATGGTGAGGAAGAGAATCGCCTCGGAGATGGAGATTGAAGGACTCGACAGCGGCGGCGGCGGCGGCGGCGGCGGTAGTGGAGGTACTACTGCTGTTCATCCACGGTTTTGCCGGCGGACTCTAGCCTCTGATCGTCCTTTTGGAGAAAATAAGACGAATGTGAATTATTGTTCTTCTTCAAACCCTAGCCATGGCGGCAACCACTCCACTGTTGTGCATAATTTAACCGCTCTGACGTCAGTTGTAATCGAAGGGTCAAATTTATCAAACCCTCCTTCTGGTTCTGATGCCACGGTCTCTTCCACTACCTCCAACAACAATCTTCTTGATAGTACTCTTCCTGTTCTTCGTCCTCAACCCCACCATCACCATTTGCAGAATCCTGCAGTCTGTGGTTTTTCTGGCTTGCCTTTGTTTCCACCGGAATCAAATCACCACCATAATAAGTTAAATACTCGTAATAACCCTTTTCCTCTTCCTAATCCATCTCAGGTTCTTCTTCATAATCCTCCTACTACTGCTACTACCTCCATTATCGCCGCCGCTTCTTCTCCTATGGACGATTCCTCCGCCACTGCTTGGATCGACGGTATCATTAAGGACTTAATCCATAGCTCCACTGCCATATCCATTCCTCAGCTCATTCAGAACGTTCGTGAGATTATCTACCCGTGTAACCCAAATCTTGCGAATCTTCTTGAGTTTCGTCTTCGTACTTTGACGGACCCTAGTGTTCCTAACTTCGCTACTGAGGATCATCGAGTGAGAAAGTCCCCTTTGCCGTTGCCGGCGCCGGTTGCTGGACTGGGGTTGCAGCAGAGGCAGTTTAACCAAGAGCAGCATGAACAAGAACATGATTGTTCTGGACTAAAGCTTAATCTCGATTCTACTTCTCTGCATAATCTTTCTAATTTTCCCTCTCAGCCGCCGTTTCATGAGCCGTACCTTCAATGGGGGGCGACCCCTCCGCCTGTCCCCACTCCCTCCGCCGCTGCCGCCGGCGAGGATGCCTTACAGCGCCTCCCTGGTCATCATCAACTTAATCTATCGTCCGTTACACCGTCGTCGCTTGTTTCTTTAAATCATGTCCCTTCTAAGCCACAATCAGAACAGCAGAACTCTTGTACTAAGGCGGCGGCGGCTGCACAGCCAGCTCCAGCACCACCATCGACGAGCAATAACCCTTCAGCGACTGCTTTGCTGATTAGAGAGATAAAAGAGGAGATGAGGCAGCAGAAGAGAGACGAGGAAGGGCTACATCTCTTGACTTTGCTTCTTCAATGCGCAGAAGCCGTTTCAGCTGATAATTTAGAAGAAGCCAACAAGATGCTCTTGGAAATCTCCGAGCTATCGACACCGTTCGGCACATCGGCCCAGAGGGTGGCGGCGTATTTCTCTGAAGCAATGTCGGCGAGGCTTGTGAGCTCTTGTTTGGGCATATATGCAGCTCTGCCGCCGTCGTTGGTGCCCCATACACACAGCCAGAAAATAGCCTCGGCCTTCCAAATCTTCAATGGCATAAGCCCATTTGTCAAATTCTCACATTTCACAGCCAATCAAGCCATACAAGAAGCTTTTGAAAGAGAAGAGAGAGTTCACATCATAGATCTAGACATCATGCAAGGACTTCAATGGCCTGGCCTGTTCCACATCTTGGCGTCTAGACCCGGTGGGCCGCCGTACGTCCGCCTTACAGGGCTGGGGACCTCTCAGGAAGTTCTTGAAGCCACTGGCAAACGCCTCACTGAATTTGCTGAGAAGCTTGGCCTTCCGTTTGATTTCTTTCCCGTGGCTGATAAAATTGGCAATCTAGACTTGGAAAGGCTCAACGTGAGCAAGAGAGAAGCCGTTGCTGTTCATTGGATGCAGCATTCTCTTTATGAAGTTACTGGTTCCGATTCCAATACGCTATGGCTTTTGCAAAGATTGGCTCCGAAAGTTGTGACGGTGGTGGAACAAGATCTGAGCCACACAGGCTCTTTCTTGGGGAGATTCGTTGAAGCCATTCATTACTATTCAGCACTGTTTGACTCATTAGGTGTGAGCTATGGCGAAGAGAGTGAAGAAAGACATTTAGTGGAGCAGCAACTGTTATCAAGGGAAATCAGAAACGTGTTGGCTGTCGGAGGGCCGTCGAGGAGCGGCGAAGTGAAGTTCCAAAACTGGAGAGAAAAACTGCAGCAATCTGGGTTTAAGGGGATTTCCCTCGCCGGAAATGCTGCAACTCAGGCCACTCTCCTCCTCGGAATGTTCCCTTCCGATGGGTATACGCTTGTAGAAGACAATGGTACTTTGAAACTTGGGTGGAAGGATCTTTGTTTGCTCACGGCCTCAGCTTGGAAGCCGCCGTTTCATCATCATGCGGCGGCGGCGGCGGCGGCGGTCACCAACAACCATATTCCCCGTTACTGA 2574 49.65 MAAYALLNDSTPRGVNGGFDDSPLTSASTNSNGSDELNHQQIVQVPQPRLPVGKMVRKRIASEMEIEGLDSGGGGGGGGSGGTTAVHPRFCRRTLASDRPFGENKTNVNYCSSSNPSHGGNHSTVVHNLTALTSVVIEGSNLSNPPSGSDATVSSTTSNNNLLDSTLPVLRPQPHHHHLQNPAVCGFSGLPLFPPESNHHHNKLNTRNNPFPLPNPSQVLLHNPPTTATTSIIAAASSPMDDSSATAWIDGIIKDLIHSSTAISIPQLIQNVREIIYPCNPNLANLLEFRLRTLTDPSVPNFATEDHRVRKSPLPLPAPVAGLGLQQRQFNQEQHEQEHDCSGLKLNLDSTSLHNLSNFPSQPPFHEPYLQWGATPPPVPTPSAAAAGEDALQRLPGHHQLNLSSVTPSSLVSLNHVPSKPQSEQQNSCTKAAAAAQPAPAPPSTSNNPSATALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLVPHTHSQKIASAFQIFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQEVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDLERLNVSKREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRSGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFHHHAAAAAAAVTNNHIPRY* 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9874571 9878826 - CsaV3_4G013520.1 Csa04g01154 526764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01154 857 MobiDBLite consensus disorder prediction 412 449 - -
Csa04g01154 857 MobiDBLite consensus disorder prediction 412 433 - -
Csa04g01154 857 MobiDBLite consensus disorder prediction 1 40 - -
Csa04g01154 857 ProSiteProfiles GRAS family profile. 466 835 IPR005202 -
Csa04g01154 857 PANTHER PROTEIN SCARECROW 157 837 - -
Csa04g01154 857 MobiDBLite consensus disorder prediction 21 40 - -
Csa04g01154 857 Pfam GRAS domain family 476 835 IPR005202 -
Csa04g01154 857 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 157 837 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01154 - - - bhj:120074183 1492.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00740 Csa-Chr4:5052044 Csa04g01154 Csa-Chr4:9874571 1.13E-161 dispersed
Csa04g01154 Csa-Chr4:9874571 Csa07g01593 Csa-Chr7:16444797 2.23E-111 dispersed
Csa04g01154 Csa-Chr4:9874571 Csa03g00440 Csa-Chr3:3721517 2.13E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g4 Blo01g01029 . Bda01g00083 . . . . Bma10g00259 . . Cma03g00259 Cma07g01178 Car03g00224 Car07g01146 Sed14g0535 . . Bhi03g02273 Tan03g0654 Cmetu08g1297 . Hepe04g0646 . . Cla04g00521 Cam04g0509 Cec04g0727 Cco04g0775 Clacu04g0554 Cmu04g0555 . . . . . . Csa04g01154 Chy08g00536 . . . . . . Bpe02g00947 . . . Cmo03g00275 Cmo07g01227 . . . . . Cpe19g00183 . . . . . . . Cla10g01611 Cam10g1658 Cec10g1707 Cco10g1671 Clacu10g1675 Cmu10g2430 Cre10g1808 . . . Cme08g02035
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03178 . 74 752 GRAS Transcription Factor Family AT2G37650 54.0 1.8e-198 689.5
Csa01g02434 . 316 698 GRAS Transcription Factor Family AT3G46600 56.1 6.9e-126 448.0
Csa06g03008 . 21 443 GRAS Transcription Factor Family AT3G49950 59.2 8.8e-134 473.8
Csa04g00740 . 71 442 GRAS Transcription Factor Family AT5G41920 71.2 9.6e-149 523.5
Csa04g01154 . 462 838 GRAS Transcription Factor Family AT5G41920 56.6 3.1e-115 412.1
Csa06g03233 . 1 610 GRAS Transcription Factor Family AT5G66770 59.1 1.5e-182 636.3
Csa04g00507 . 1 590 GRAS Transcription Factor Family AT5G66770 56.5 3.3e-174 608.6
Csa06g00941 . 57 546 GRAS Transcription Factor Family AT1G50600 59.6 1.5e-162 569.7
Csa03g00440 . 46 544 GRAS Transcription Factor Family AT1G50600 56.9 2.5e-157 552.4
Csa06g03453 . 103 542 GRAS Transcription Factor Family AT1G50600 55.1 6.8e-139 491.1
Csa03g02273 . 202 593 GRAS Transcription Factor Family AT1G50600 57.7 7.3e-133 471.1
Csa05g02016 . 44 581 GRAS Transcription Factor Family AT1G14920 68.0 3.1e-208 721.5
Csa05g01594 . 53 600 GRAS Transcription Factor Family AT1G14920 61.4 1.0e-182 636.7
Csa03g02085 . 30 554 GRAS Transcription Factor Family AT1G14920 55.1 1.7e-153 539.7
Csa03g00359 . 1 364 GRAS Transcription Factor Family AT1G55580 50.6 6.7e-103 371.3
Csa05g01594 . 51 597 GRAS Transcription Factor Family AT1G66350 61.6 2.4e-181 632.1
Csa05g02016 . 1 579 GRAS Transcription Factor Family AT1G66350 57.1 1.8e-173 605.9
Csa03g02085 . 1 553 GRAS Transcription Factor Family AT1G66350 54.7 9.2e-157 550.4
Csa06g00941 . 19 546 GRAS Transcription Factor Family AT5G48150 66.5 6.3e-195 677.2
Csa03g00440 . 19 544 GRAS Transcription Factor Family AT5G48150 57.2 7.2e-167 583.9
Csa06g03453 . 96 542 GRAS Transcription Factor Family AT5G48150 57.9 8.9e-149 523.9
Csa03g02273 . 113 593 GRAS Transcription Factor Family AT5G48150 51.5 5.0e-136 481.5
Csa05g02016 . 46 578 GRAS Transcription Factor Family AT2G01570 69.1 5.2e-212 734.2
Csa05g01594 . 55 598 GRAS Transcription Factor Family AT2G01570 62.9 1.2e-189 659.8
Csa03g02085 . 30 554 GRAS Transcription Factor Family AT2G01570 56.5 7.3e-158 554.3
Csa05g01594 . 51 597 GRAS Transcription Factor Family AT1G66350 61.6 2.4e-181 632.1
Csa05g02016 . 1 579 GRAS Transcription Factor Family AT1G66350 57.1 1.8e-173 605.9
Csa03g02085 . 1 553 GRAS Transcription Factor Family AT1G66350 54.7 9.2e-157 550.4
Csa05g01594 . 55 598 GRAS Transcription Factor Family AT3G03450 61.5 1.2e-178 623.2
Csa05g02016 . 46 578 GRAS Transcription Factor Family AT3G03450 59.8 7.8e-170 594.0
Csa03g02085 . 30 554 GRAS Transcription Factor Family AT3G03450 56.5 3.9e-153 538.5
Csa05g01594 . 48 600 GRAS Transcription Factor Family AT5G17490 56.1 1.6e-159 559.7
Csa05g02016 . 42 578 GRAS Transcription Factor Family AT5G17490 56.6 3.0e-155 545.4
Csa03g02085 . 26 554 GRAS Transcription Factor Family AT5G17490 52.1 3.0e-134 475.7
Csa07g01411 . 1 571 GRAS Transcription Factor Family AT1G21450 57.9 7.4e-174 607.4
Csa03g00440 . 168 544 GRAS Transcription Factor Family AT1G21450 51.1 2.6e-110 396.4
Csa03g02273 . 225 593 GRAS Transcription Factor Family AT1G21450 50.3 6.0e-107 385.2
Csa01g02434 . 324 698 GRAS Transcription Factor Family AT5G59450 56.5 5.3e-127 451.8
Csa06g03453 . 1 541 GRAS Transcription Factor Family AT4G17230 58.1 1.2e-172 603.2
Csa03g00440 . 49 544 GRAS Transcription Factor Family AT4G17230 51.9 1.5e-133 473.4
Csa03g02273 . 220 593 GRAS Transcription Factor Family AT4G17230 52.1 3.0e-110 396.0
Csa06g00941 . 134 546 GRAS Transcription Factor Family AT2G04890 66.7 6.5e-161 563.9
Csa03g00440 . 147 544 GRAS Transcription Factor Family AT2G04890 59.4 8.3e-140 493.8
Csa03g02273 . 206 593 GRAS Transcription Factor Family AT2G04890 55.7 8.0e-127 450.7
Csa06g03453 . 161 542 GRAS Transcription Factor Family AT2G04890 57.6 4.9e-124 441.4
Csa05g02830 . 12 473 GRAS Transcription Factor Family AT1G50420 60.8 5.1e-157 551.2
Csa01g03195 . 1 436 GRAS Transcription Factor Family AT1G50420 60.2 3.8e-152 535.0
Csa03g00280 . 411 774 GRAS Transcription Factor Family AT4G00150 56.3 1.1e-105 380.9
Csa04g00507 . 1 590 GRAS Transcription Factor Family AT3G50650 52.2 5.4e-155 544.7
Csa06g03233 . 1 610 GRAS Transcription Factor Family AT3G50650 50.9 8.0e-151 530.8
Csa04g01154 . 183 836 GRAS Transcription Factor Family AT3G54220 60.2 2.3e-205 712.2
Csa04g00740 . 75 443 GRAS Transcription Factor Family AT3G54220 64.5 3.9e-136 482.3
Csa06g03022 . 90 490 GRAS Transcription Factor Family AT4G37650 67.6 4.6e-159 558.1
Csa02g01459 . 100 493 GRAS Transcription Factor Family AT4G37650 56.6 2.2e-124 443.0
Csa06g00684 . 68 459 GRAS Transcription Factor Family AT4G37650 50.1 7.9e-111 397.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008944 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 0 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31546 PF03514 GRAS 7.40E-127 CL0063 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01154 Csa_Chr04 FPKM 4.760728 3.949929 9.504492 9.835093 3.871014 3.554565 4.427057 18.411192 18.647408 18.967525