Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01154 ATGGCTGCTTACGCTTTGCTCAACGATTCCACCCCCCGTGGTGTTAATGGCGGTTTTGATGATAGTCCTTTGACTAGTGCTTCCACTAATAGCAACGGTAGTGACGAACTTAATCATCAACAGATTGTTCAGGTTCCTCAACCAAGATTGCCGGTTGGAAAAATGGTGAGGAAGAGAATCGCCTCGGAGATGGAGATTGAAGGACTCGACAGCGGCGGCGGCGGCGGCGGCGGCGGTAGTGGAGGTACTACTGCTGTTCATCCACGGTTTTGCCGGCGGACTCTAGCCTCTGATCGTCCTTTTGGAGAAAATAAGACGAATGTGAATTATTGTTCTTCTTCAAACCCTAGCCATGGCGGCAACCACTCCACTGTTGTGCATAATTTAACCGCTCTGACGTCAGTTGTAATCGAAGGGTCAAATTTATCAAACCCTCCTTCTGGTTCTGATGCCACGGTCTCTTCCACTACCTCCAACAACAATCTTCTTGATAGTACTCTTCCTGTTCTTCGTCCTCAACCCCACCATCACCATTTGCAGAATCCTGCAGTCTGTGGTTTTTCTGGCTTGCCTTTGTTTCCACCGGAATCAAATCACCACCATAATAAGTTAAATACTCGTAATAACCCTTTTCCTCTTCCTAATCCATCTCAGGTTCTTCTTCATAATCCTCCTACTACTGCTACTACCTCCATTATCGCCGCCGCTTCTTCTCCTATGGACGATTCCTCCGCCACTGCTTGGATCGACGGTATCATTAAGGACTTAATCCATAGCTCCACTGCCATATCCATTCCTCAGCTCATTCAGAACGTTCGTGAGATTATCTACCCGTGTAACCCAAATCTTGCGAATCTTCTTGAGTTTCGTCTTCGTACTTTGACGGACCCTAGTGTTCCTAACTTCGCTACTGAGGATCATCGAGTGAGAAAGTCCCCTTTGCCGTTGCCGGCGCCGGTTGCTGGACTGGGGTTGCAGCAGAGGCAGTTTAACCAAGAGCAGCATGAACAAGAACATGATTGTTCTGGACTAAAGCTTAATCTCGATTCTACTTCTCTGCATAATCTTTCTAATTTTCCCTCTCAGCCGCCGTTTCATGAGCCGTACCTTCAATGGGGGGCGACCCCTCCGCCTGTCCCCACTCCCTCCGCCGCTGCCGCCGGCGAGGATGCCTTACAGCGCCTCCCTGGTCATCATCAACTTAATCTATCGTCCGTTACACCGTCGTCGCTTGTTTCTTTAAATCATGTCCCTTCTAAGCCACAATCAGAACAGCAGAACTCTTGTACTAAGGCGGCGGCGGCTGCACAGCCAGCTCCAGCACCACCATCGACGAGCAATAACCCTTCAGCGACTGCTTTGCTGATTAGAGAGATAAAAGAGGAGATGAGGCAGCAGAAGAGAGACGAGGAAGGGCTACATCTCTTGACTTTGCTTCTTCAATGCGCAGAAGCCGTTTCAGCTGATAATTTAGAAGAAGCCAACAAGATGCTCTTGGAAATCTCCGAGCTATCGACACCGTTCGGCACATCGGCCCAGAGGGTGGCGGCGTATTTCTCTGAAGCAATGTCGGCGAGGCTTGTGAGCTCTTGTTTGGGCATATATGCAGCTCTGCCGCCGTCGTTGGTGCCCCATACACACAGCCAGAAAATAGCCTCGGCCTTCCAAATCTTCAATGGCATAAGCCCATTTGTCAAATTCTCACATTTCACAGCCAATCAAGCCATACAAGAAGCTTTTGAAAGAGAAGAGAGAGTTCACATCATAGATCTAGACATCATGCAAGGACTTCAATGGCCTGGCCTGTTCCACATCTTGGCGTCTAGACCCGGTGGGCCGCCGTACGTCCGCCTTACAGGGCTGGGGACCTCTCAGGAAGTTCTTGAAGCCACTGGCAAACGCCTCACTGAATTTGCTGAGAAGCTTGGCCTTCCGTTTGATTTCTTTCCCGTGGCTGATAAAATTGGCAATCTAGACTTGGAAAGGCTCAACGTGAGCAAGAGAGAAGCCGTTGCTGTTCATTGGATGCAGCATTCTCTTTATGAAGTTACTGGTTCCGATTCCAATACGCTATGGCTTTTGCAAAGATTGGCTCCGAAAGTTGTGACGGTGGTGGAACAAGATCTGAGCCACACAGGCTCTTTCTTGGGGAGATTCGTTGAAGCCATTCATTACTATTCAGCACTGTTTGACTCATTAGGTGTGAGCTATGGCGAAGAGAGTGAAGAAAGACATTTAGTGGAGCAGCAACTGTTATCAAGGGAAATCAGAAACGTGTTGGCTGTCGGAGGGCCGTCGAGGAGCGGCGAAGTGAAGTTCCAAAACTGGAGAGAAAAACTGCAGCAATCTGGGTTTAAGGGGATTTCCCTCGCCGGAAATGCTGCAACTCAGGCCACTCTCCTCCTCGGAATGTTCCCTTCCGATGGGTATACGCTTGTAGAAGACAATGGTACTTTGAAACTTGGGTGGAAGGATCTTTGTTTGCTCACGGCCTCAGCTTGGAAGCCGCCGTTTCATCATCATGCGGCGGCGGCGGCGGCGGCGGTCACCAACAACCATATTCCCCGTTACTGA 2574 49.65 MAAYALLNDSTPRGVNGGFDDSPLTSASTNSNGSDELNHQQIVQVPQPRLPVGKMVRKRIASEMEIEGLDSGGGGGGGGSGGTTAVHPRFCRRTLASDRPFGENKTNVNYCSSSNPSHGGNHSTVVHNLTALTSVVIEGSNLSNPPSGSDATVSSTTSNNNLLDSTLPVLRPQPHHHHLQNPAVCGFSGLPLFPPESNHHHNKLNTRNNPFPLPNPSQVLLHNPPTTATTSIIAAASSPMDDSSATAWIDGIIKDLIHSSTAISIPQLIQNVREIIYPCNPNLANLLEFRLRTLTDPSVPNFATEDHRVRKSPLPLPAPVAGLGLQQRQFNQEQHEQEHDCSGLKLNLDSTSLHNLSNFPSQPPFHEPYLQWGATPPPVPTPSAAAAGEDALQRLPGHHQLNLSSVTPSSLVSLNHVPSKPQSEQQNSCTKAAAAAQPAPAPPSTSNNPSATALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLVPHTHSQKIASAFQIFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQEVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDLERLNVSKREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRSGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFHHHAAAAAAAVTNNHIPRY* 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9874571 9878826 - CsaV3_4G013520.1 Csa04g01154 526764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01154 857 MobiDBLite consensus disorder prediction 412 449 - -
Csa04g01154 857 MobiDBLite consensus disorder prediction 412 433 - -
Csa04g01154 857 MobiDBLite consensus disorder prediction 1 40 - -
Csa04g01154 857 ProSiteProfiles GRAS family profile. 466 835 IPR005202 -
Csa04g01154 857 PANTHER PROTEIN SCARECROW 157 837 - -
Csa04g01154 857 MobiDBLite consensus disorder prediction 21 40 - -
Csa04g01154 857 Pfam GRAS domain family 476 835 IPR005202 -
Csa04g01154 857 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 157 837 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00740 Csa-Chr4:5052044 Csa04g01154 Csa-Chr4:9874571 1.13E-161 dispersed
Csa04g01154 Csa-Chr4:9874571 Csa07g01593 Csa-Chr7:16444797 2.23E-111 dispersed
Csa04g01154 Csa-Chr4:9874571 Csa03g00440 Csa-Chr3:3721517 2.13E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31546 PF03514 GRAS 7.40E-127 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01154 - - bhj:120074183 1492.25