Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01158 ATGGAGAAGTACGAGAAGCTCGAAAAAGTCGGTGAAGGAACTTACGGTAAGGTCTACAAGGCCAAAGACAAAGAAACTGGCCAACTCGTTGCTCTCAAGAAAACTCGCCTCGAAATGGATGAAGAAGGCGTTCCACCAACCGCACTTCGTGAGGTTTCTCTTCTTCAATTGCTTTCTCAATCCCTCTATGTCGTTCGTCTTCTCTGTGTTGAGCATGTTCATCACCATAAGAGTGGTAAACCTCTTCTTTACCTTGTGTTTGAGTATCTCGACACTGATCTCAAGAAGTACATTGATTCGCATCGGAAAGGTCCCAATCCTAGGCCTCTTCCTTCCTCTCTTGTTCAGAGTTTCCTGTTTCAGCTCTGTAAGGGTGTTGCGCATTGTCATAGTCATGGTGTTCTTCACCGTGATCTCAAGCCCCAGAATCTACTTCTCGATCAGGGTAAAGGTGTTTTGAAGATTGCTGATCTTGGCCTTGGTCGTGCTTTTACTGTCCCTCTTAAGAGCTACACTCATGAAATTGTTACTCTCTGGTATCGTGCTCCTGAGGTTCTCCTTGGATCTACACATTACTCCACTGCTGTCGATATGTGGTCTGTTGGCTGCATCTTTGCTGAGATGGTGAGAAGGCAAGCACTTTTCCCCGGAGATTCTGAGTTCCAGCAATTGCTTCACATTTTCAGGCTGCTAGGTACACCCAGTGAGAAACAATGGCCTGGAGTTAGCTCTTTGAGGGATTGGCATGTCTATCCTCAATGGGAACCTCAGAATCTTACACGTGCAGTTCCATCCTTGGAACCCGAGGGTGTTGACCTTCTCTCGAAAATGCTTCAATATAATCCAGCAGACAGAATCTCAGCTAAAGCAGCTCTTGACCATCCATATTTCGATAGCCTCGACAAGTCTCAGTATTAA 918 45.86 MEKYEKLEKVGEGTYGKVYKAKDKETGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEYLDTDLKKYIDSHRKGPNPRPLPSSLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQGKGVLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPSEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEPEGVDLLSKMLQYNPADRISAKAALDHPYFDSLDKSQY* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9986452 9995194 + CsaV3_4G013560.1 Csa04g01158 526768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01158 305 Pfam Protein kinase domain 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01158 305 SMART serkin_6 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01158 305 SUPERFAMILY Protein kinase-like (PK-like) 1 300 IPR011009 -
Csa04g01158 305 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Csa04g01158 305 PANTHER CELL DIVISION PROTEIN KINASE 1 305 - -
Csa04g01158 305 PANTHER CYCLIN-DEPENDENT KINASE B1-2 1 305 - -
Csa04g01158 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Csa04g01158 305 Gene3D Transferase(Phosphotransferase) domain 1 92 305 - -
Csa04g01158 305 ProSiteProfiles Protein kinase domain profile. 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01158 305 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01158 Csa-Chr4:9986452 Csa04g02739 Csa-Chr4:26301211 5.57E-156 dispersed
Csa05g01714 Csa-Chr5:20371376 Csa04g01158 Csa-Chr4:9986452 1.39E-14 dispersed
Csa04g01158 Csa-Chr4:9986452 Csa05g02741 Csa-Chr5:28151896 2.99E-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78143 PF00069 Pkinase 9.60E-67 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01158 K07760 - csv:101204557 608.216