Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01173 | ATGGGAAGAGGGAAGATAGTCATAAGAAGAATAGACAATTCAACAAGCAGGCAAGTGACCTTTTCAAAGAGGAGAAGTGGTTTATTGAAAAAGGCTAGAGAACTTTCAATCCTCTGCGATGCTGAAGTTGGTTTGATCATTTTTTCAAGCACTGGCAAACTCTATGATTATTCCAGTTCCAGCATAAGGTCGATTACCGATCGATACAACAAGATGAAAGAGGAGCAAAATCAGCTGATGAATTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAGGAATGTCACAGACAACTGATGGGTGAAGAGCTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAGCCAATTGGAAATGAGTTTGAAAGGCGTCCGTGTGAAGAAGGAAAAGACTTTAAGTGATGAAATTACTGAACTAAAACAGAAGGGGAACCATATGCATCAAGAAAATGTGGAACTCTACAAAAGATTAGATATGACTCGTAAGGAAAATGCAGAACTGCAAATGAAGTACCAGGCCTATGGACCAATGGAAATAGATAAAACAAGCAGTAGCTCTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCGCAAAACAACGAAACACCAGGAATAAAGCTGGGATTGCAACTTCAATAA | 708 | 39.83 | MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSSSIRSITDRYNKMKEEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKTLSDEITELKQKGNHMHQENVELYKRLDMTRKENAELQMKYQAYGPMEIDKTSSSSQQFTITNRYSMPALQLRQPQPQNNETPGIKLGLQLQ* | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10151096 | 10174542 | - | CsaV3_4G014700.1 | Csa04g01173 | 526783 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01173 | 235 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01173 | 235 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01173 | 235 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01173 | 235 | PANTHER | - | 1 | 232 | - | - | |
Csa04g01173 | 235 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01173 | 235 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01173 | 235 | Coils | Coil | 163 | 183 | - | - | |
Csa04g01173 | 235 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Csa04g01173 | 235 | Gene3D | - | 13 | 93 | IPR036879 | GO:0003677|GO:0046983 | |
Csa04g01173 | 235 | SUPERFAMILY | SRF-like | 2 | 90 | IPR036879 | GO:0003677|GO:0046983 | |
Csa04g01173 | 235 | MobiDBLite | consensus disorder prediction | 216 | 235 | - | - | |
Csa04g01173 | 235 | Coils | Coil | 62 | 99 | - | - | |
Csa04g01173 | 235 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 232 | - | - | |
Csa04g01173 | 235 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01173 | 235 | Pfam | K-box region | 84 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa04g01173 | 235 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01173 | 235 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g04509 | Csa-Chr3:39311564 | Csa04g01173 | Csa-Chr4:10151096 | 2.99E-90 | dispersed | |
Csa04g01173 | Csa-Chr4:10151096 | Csa06g03095 | Csa-Chr6:26520126 | 1.54E-75 | dispersed | |
Csa07g00595 | Csa-Chr7:4326875 | Csa04g01173 | Csa-Chr4:10151096 | 4.19E-36 | dispersed | |
Csa04g01173 | Csa-Chr4:10151096 | Csa04g01180 | Csa-Chr4:10220360 | 1.48E-34 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31547 | PF01486 | K-box | 2.80E-26 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01173 | K09264 | - | csv:101203098 | 459.914 |