Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01173 ATGGGAAGAGGGAAGATAGTCATAAGAAGAATAGACAATTCAACAAGCAGGCAAGTGACCTTTTCAAAGAGGAGAAGTGGTTTATTGAAAAAGGCTAGAGAACTTTCAATCCTCTGCGATGCTGAAGTTGGTTTGATCATTTTTTCAAGCACTGGCAAACTCTATGATTATTCCAGTTCCAGCATAAGGTCGATTACCGATCGATACAACAAGATGAAAGAGGAGCAAAATCAGCTGATGAATTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAGGAATGTCACAGACAACTGATGGGTGAAGAGCTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAGCCAATTGGAAATGAGTTTGAAAGGCGTCCGTGTGAAGAAGGAAAAGACTTTAAGTGATGAAATTACTGAACTAAAACAGAAGGGGAACCATATGCATCAAGAAAATGTGGAACTCTACAAAAGATTAGATATGACTCGTAAGGAAAATGCAGAACTGCAAATGAAGTACCAGGCCTATGGACCAATGGAAATAGATAAAACAAGCAGTAGCTCTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCGCAAAACAACGAAACACCAGGAATAAAGCTGGGATTGCAACTTCAATAA 708 39.83 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSSSIRSITDRYNKMKEEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKTLSDEITELKQKGNHMHQENVELYKRLDMTRKENAELQMKYQAYGPMEIDKTSSSSQQFTITNRYSMPALQLRQPQPQNNETPGIKLGLQLQ* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10151096 10174542 - CsaV3_4G014700.1 Csa04g01173 526783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01173 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa04g01173 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa04g01173 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa04g01173 235 PANTHER - 1 232 - -
Csa04g01173 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa04g01173 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa04g01173 235 Coils Coil 163 183 - -
Csa04g01173 235 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Csa04g01173 235 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Csa04g01173 235 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Csa04g01173 235 MobiDBLite consensus disorder prediction 216 235 - -
Csa04g01173 235 Coils Coil 62 99 - -
Csa04g01173 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Csa04g01173 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa04g01173 235 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa04g01173 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa04g01173 235 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04509 Csa-Chr3:39311564 Csa04g01173 Csa-Chr4:10151096 2.99E-90 dispersed
Csa04g01173 Csa-Chr4:10151096 Csa06g03095 Csa-Chr6:26520126 1.54E-75 dispersed
Csa07g00595 Csa-Chr7:4326875 Csa04g01173 Csa-Chr4:10151096 4.19E-36 dispersed
Csa04g01173 Csa-Chr4:10151096 Csa04g01180 Csa-Chr4:10220360 1.48E-34 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31547 PF01486 K-box 2.80E-26 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01173 K09264 - csv:101203098 459.914