Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01180 | ATGACAAGACAAAAAATAGAGATAAAGAAAATAGACAACATAGCAGCAAGACAAGTGACATTTTCAAAGAGGAGAAGAGGGCTATTCAAAAAAGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCTAGCTCAAGCATGCTGGATTTACTAAGAAGACATAATATGCTACCGGAGCTGAATAGCATTAGCCAACCTCCATCCCAGTTGGAAAAGAGTGCCCATGCTAAATTGACTGAAGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAAGGGAGAGGAGCTTCAAGAACTTGGAATAGAAGAATTAAAGCAGTTGGAGAAATTGCTTGAGAATGGTTTGAATCGTGTAATAGAGACCAAGGATGAAAAGTTTCTTAAAGAAATTGTTACCGTAAAGGAGAAGGAAAGCTTGCTAATGAAAGAGAATCAGAGACTGAGGAATAAATTACCTTTCTGGTGTTTTCTGTGA | 522 | 37.55 | MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLDLLRRHNMLPELNSISQPPSQLEKSAHAKLTEEFAAKTKELRHMKGEELQELGIEELKQLEKLLENGLNRVIETKDEKFLKEIVTVKEKESLLMKENQRLRNKLPFWCFL* | 174 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10220360 | 10228281 | - | CsaV3_4G014770.1 | Csa04g01180 | 526790 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01180 | 173 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01180 | 173 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01180 | 173 | SUPERFAMILY | SRF-like | 2 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Csa04g01180 | 173 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01180 | 173 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 165 | - | - | |
Csa04g01180 | 173 | ProSiteProfiles | K-box domain profile. | 83 | 173 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa04g01180 | 173 | Pfam | K-box region | 86 | 167 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa04g01180 | 173 | Gene3D | - | 13 | 80 | IPR036879 | GO:0003677|GO:0046983 | |
Csa04g01180 | 173 | PANTHER | MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 | 1 | 165 | - | - | |
Csa04g01180 | 173 | Coils | Coil | 120 | 140 | - | - | |
Csa04g01180 | 173 | CDD | MADS_MEF2_like | 3 | 69 | IPR033896 | GO:0000977|GO:0045944 | |
Csa04g01180 | 173 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01180 | 173 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01180 | 173 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Csa04g01180 | 173 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02211 | Csa-Chr2:19879642 | Csa04g01180 | Csa-Chr4:10220360 | 5.03E-52 | dispersed | |
Csa04g01180 | Csa-Chr4:10220360 | Csa06g03115 | Csa-Chr6:26630513 | 1.41E-61 | dispersed | |
Csa04g01173 | Csa-Chr4:10151096 | Csa04g01180 | Csa-Chr4:10220360 | 1.48E-34 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31548 | PF01486 | K-box | 1.90E-16 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01180 | - | - | csv:101223132 | 293.508 |