Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01180 ATGACAAGACAAAAAATAGAGATAAAGAAAATAGACAACATAGCAGCAAGACAAGTGACATTTTCAAAGAGGAGAAGAGGGCTATTCAAAAAAGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCTAGCTCAAGCATGCTGGATTTACTAAGAAGACATAATATGCTACCGGAGCTGAATAGCATTAGCCAACCTCCATCCCAGTTGGAAAAGAGTGCCCATGCTAAATTGACTGAAGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAAGGGAGAGGAGCTTCAAGAACTTGGAATAGAAGAATTAAAGCAGTTGGAGAAATTGCTTGAGAATGGTTTGAATCGTGTAATAGAGACCAAGGATGAAAAGTTTCTTAAAGAAATTGTTACCGTAAAGGAGAAGGAAAGCTTGCTAATGAAAGAGAATCAGAGACTGAGGAATAAATTACCTTTCTGGTGTTTTCTGTGA 522 37.55 MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLDLLRRHNMLPELNSISQPPSQLEKSAHAKLTEEFAAKTKELRHMKGEELQELGIEELKQLEKLLENGLNRVIETKDEKFLKEIVTVKEKESLLMKENQRLRNKLPFWCFL* 174
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 10220360 10228281 - CsaV3_4G014770.1 Csa04g01180 526790
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01180 173 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa04g01180 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa04g01180 173 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Csa04g01180 173 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa04g01180 173 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 - -
Csa04g01180 173 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa04g01180 173 Pfam K-box region 86 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa04g01180 173 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Csa04g01180 173 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 165 - -
Csa04g01180 173 Coils Coil 120 140 - -
Csa04g01180 173 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Csa04g01180 173 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa04g01180 173 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa04g01180 173 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa04g01180 173 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02211 Csa-Chr2:19879642 Csa04g01180 Csa-Chr4:10220360 5.03E-52 dispersed
Csa04g01180 Csa-Chr4:10220360 Csa06g03115 Csa-Chr6:26630513 1.41E-61 dispersed
Csa04g01173 Csa-Chr4:10151096 Csa04g01180 Csa-Chr4:10220360 1.48E-34 proximal
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31548 PF01486 K-box 1.90E-16 No_clan Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01180 - - csv:101223132 293.508