Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01217 | ATGGATGATCCATTCATTCGAAATTACATTGAAGATCTGTTGAAGAATGTCAGAACCCAAGTGTTACTTAAACTTATCAAGCCTTACACAAGAATCCGGATTCCATTTATATCAAAGGAACTCAATGTACCGGAGAAAGATGTTGAACAATTATTAGTTTCACTAATCCTGGATAATCGCATTGATGGTCACATTGATCAAGTCAACAGACTTTTGGAGCGTGGTGACAGGATAAGAAGGGGTCCGTTTGCAAGTCTAGATGTAATGATTAAGGACGGTGGAAATGTTATAGACTTAGAAATGTTCTTGAGGGATAAACAACTTGATTTCATATACGGGAATGTGATGGAGGCTATTGGAGTTGTGGTGGAAGGTGTAGGACCCAAGTTTCAGCTAATAAATCTTGTACAAGAGAAGTTAGCGGTGATAAAATCTTCCAGAGGTGAAACACCGCTTAGGAAGAGTTCCCGAGAGAATTTGGCCTTTCAGCAATCTCAGGAGTCGTTAATTTCTGCTCTGAAGCGGCTACATAATTTCTCTTCTTCATCCTCACTGTCTAAAAGGGTGTTGGAAGATTTTACATCCATGAGAAGATCAGGTGTAAACCAACCAAAAGTCAAGCGTCTTGTTGGAAAATATGAAATGGGTCGAACAATTGGTGAAGGTACATTTGCAAAAGTGAAATTTGCCAAAAATTCTGAGACTGGGGAACATGTAGCGATAAAGATCCTTGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATAAAGCGGGAAATTGCCACGATGAAACTAATACAGCATCCACATGTCGTCCAATTGTTTGAGGTGATGGGGAGCAAAACAAAGATATTTATTGTTTTGGAGTTTGTTACTGGCGGAGAACTTTTTGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGGAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGAGATCTTAAGCCAGAAAATTTATTGTTAGATGCCTACGGGAATCTTAAAGTGTCTGACTTTGGCTTGAGTGCATTATCACAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCCGAGGTCCTTAATGATAGAGGCTACGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTCATACTCTTCGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTCATGAACCTTTATAAAAAGATCTCGGCTGCTGAGTTTACTTGTCCTCCATGGCTTTCTTTAGATGCCATGAAATTGATAGCCCGAATTTTGGATCCCAACCCAATGACTCGCATCACTATACCAGAAATTTTGGAAGATGAATGGTTTAAAAAAGATTATAAACCCCCTGTTTTTGAGGAGCAGAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTTAAAGATTCAGAAGAACACCATGTGACAGAGAAGAAGGAAGAACACCCAGCAGCTATGAATGCCTTCGAGTTAATTTCAATGTCAAAGGGGCTCAACCTGGCAAATTTATTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGTTCAGCTAATGAAATTGTAAATAAGATCGAGGAAGCTGCCAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTGAAAGCCGGTCGGAAGGGAAACCTTAATGTTGCGACAGAGATTTTGCAAGTCGCGCCTTCTGTCCATGTGGTTGAGATGCGAAAAGCAAAGGGAGACACTCTAGAGTTTCACAAGTTCTACAAAAACCTTTCCACCTCTCTGGAGGATGTTGTTTGGAAGACTGAGGAAGACATGCAAGAAACAAAGTGA | 1920 | 40.0 | MDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRIRRGPFASLDVMIKDGGNVIDLEMFLRDKQLDFIYGNVMEAIGVVVEGVGPKFQLINLVQEKLAVIKSSRGETPLRKSSRENLAFQQSQESLISALKRLHNFSSSSSLSKRVLEDFTSMRRSGVNQPKVKRLVGKYEMGRTIGEGTFAKVKFAKNSETGEHVAIKILDKEKVLKHKMAEQIKREIATMKLIQHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLMNLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITIPEILEDEWFKKDYKPPVFEEQKIANLDDVEAVFKDSEEHHVTEKKEEHPAAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETK* | 640 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10801059 | 10812731 | + | CsaV3_4G017300.1 | Csa04g01217 | 526827 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01217 | 639 | SMART | serkin_6 | 213 | 468 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g01217 | 639 | SUPERFAMILY | Winged helix DNA-binding domain | 2 | 76 | IPR036390 | - | |
Csa04g01217 | 639 | ProSitePatterns | Protein kinases ATP-binding region signature. | 219 | 242 | IPR017441 | GO:0005524 | |
Csa04g01217 | 639 | ProSiteProfiles | PCI domain profile. | 1 | 79 | IPR000717 | - | |
Csa04g01217 | 639 | Gene3D | Transferase(Phosphotransferase) domain 1 | 293 | 495 | - | - | |
Csa04g01217 | 639 | CDD | STKc_SnRK3 | 212 | 467 | - | - | |
Csa04g01217 | 639 | Pfam | PCI domain | 2 | 73 | IPR000717 | - | |
Csa04g01217 | 639 | CDD | CIPK_C | 512 | 626 | - | - | |
Csa04g01217 | 639 | PANTHER | - | 202 | 632 | - | - | |
Csa04g01217 | 639 | ProSiteProfiles | Protein kinase domain profile. | 213 | 468 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g01217 | 639 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 332 | 344 | IPR008271 | GO:0004672|GO:0006468 | |
Csa04g01217 | 639 | Gene3D | - | 1 | 98 | - | - | |
Csa04g01217 | 639 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 | 202 | 632 | - | - | |
Csa04g01217 | 639 | Pfam | Protein kinase domain | 213 | 468 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g01217 | 639 | SMART | PINT_4 | 8 | 93 | IPR000717 | - | |
Csa04g01217 | 639 | Pfam | NAF domain | 508 | 567 | IPR004041 | GO:0007165 | |
Csa04g01217 | 639 | ProSiteProfiles | NAF domain profile. | 506 | 530 | IPR018451 | GO:0007165 | |
Csa04g01217 | 639 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 8 | 93 | - | - | |
Csa04g01217 | 639 | SUPERFAMILY | Protein kinase-like (PK-like) | 209 | 497 | IPR011009 | - | |
Csa04g01217 | 639 | Gene3D | Phosphorylase Kinase; domain 1 | 202 | 292 | - | - | |
Csa04g01217 | 639 | Gene3D | Kinase associated domain 1, KA1 | 505 | 630 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02229 | Csa-Chr2:20005697 | Csa04g01217 | Csa-Chr4:10801059 | 0 | dispersed | |
Csa04g01217 | Csa-Chr4:10801059 | Csa06g03811 | Csa-Chr6:30243812 | 0 | dispersed | |
Csa04g01309 | Csa-Chr4:13474780 | Csa04g01217 | Csa-Chr4:10801059 | 1.01E-43 | dispersed | |
Csa06g00625 | Csa-Chr6:5241694 | Csa04g01217 | Csa-Chr4:10801059 | 2.99E-89 | dispersed | |
Csa06g00838 | Csa-Chr6:6726476 | Csa04g01217 | Csa-Chr4:10801059 | 2.22E-48 | dispersed | |
Csa04g01217 | Csa-Chr4:10801059 | Csa01g02318 | Csa-Chr1:20282952 | 4.85E-163 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78144 | PF00069 | Pkinase | 3.20E-72 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01217 | - | - | csv:101221173 | 887.486 |