Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01217 ATGGATGATCCATTCATTCGAAATTACATTGAAGATCTGTTGAAGAATGTCAGAACCCAAGTGTTACTTAAACTTATCAAGCCTTACACAAGAATCCGGATTCCATTTATATCAAAGGAACTCAATGTACCGGAGAAAGATGTTGAACAATTATTAGTTTCACTAATCCTGGATAATCGCATTGATGGTCACATTGATCAAGTCAACAGACTTTTGGAGCGTGGTGACAGGATAAGAAGGGGTCCGTTTGCAAGTCTAGATGTAATGATTAAGGACGGTGGAAATGTTATAGACTTAGAAATGTTCTTGAGGGATAAACAACTTGATTTCATATACGGGAATGTGATGGAGGCTATTGGAGTTGTGGTGGAAGGTGTAGGACCCAAGTTTCAGCTAATAAATCTTGTACAAGAGAAGTTAGCGGTGATAAAATCTTCCAGAGGTGAAACACCGCTTAGGAAGAGTTCCCGAGAGAATTTGGCCTTTCAGCAATCTCAGGAGTCGTTAATTTCTGCTCTGAAGCGGCTACATAATTTCTCTTCTTCATCCTCACTGTCTAAAAGGGTGTTGGAAGATTTTACATCCATGAGAAGATCAGGTGTAAACCAACCAAAAGTCAAGCGTCTTGTTGGAAAATATGAAATGGGTCGAACAATTGGTGAAGGTACATTTGCAAAAGTGAAATTTGCCAAAAATTCTGAGACTGGGGAACATGTAGCGATAAAGATCCTTGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATAAAGCGGGAAATTGCCACGATGAAACTAATACAGCATCCACATGTCGTCCAATTGTTTGAGGTGATGGGGAGCAAAACAAAGATATTTATTGTTTTGGAGTTTGTTACTGGCGGAGAACTTTTTGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGGAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGAGATCTTAAGCCAGAAAATTTATTGTTAGATGCCTACGGGAATCTTAAAGTGTCTGACTTTGGCTTGAGTGCATTATCACAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCCGAGGTCCTTAATGATAGAGGCTACGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTCATACTCTTCGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTCATGAACCTTTATAAAAAGATCTCGGCTGCTGAGTTTACTTGTCCTCCATGGCTTTCTTTAGATGCCATGAAATTGATAGCCCGAATTTTGGATCCCAACCCAATGACTCGCATCACTATACCAGAAATTTTGGAAGATGAATGGTTTAAAAAAGATTATAAACCCCCTGTTTTTGAGGAGCAGAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTTAAAGATTCAGAAGAACACCATGTGACAGAGAAGAAGGAAGAACACCCAGCAGCTATGAATGCCTTCGAGTTAATTTCAATGTCAAAGGGGCTCAACCTGGCAAATTTATTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGTTCAGCTAATGAAATTGTAAATAAGATCGAGGAAGCTGCCAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTGAAAGCCGGTCGGAAGGGAAACCTTAATGTTGCGACAGAGATTTTGCAAGTCGCGCCTTCTGTCCATGTGGTTGAGATGCGAAAAGCAAAGGGAGACACTCTAGAGTTTCACAAGTTCTACAAAAACCTTTCCACCTCTCTGGAGGATGTTGTTTGGAAGACTGAGGAAGACATGCAAGAAACAAAGTGA 1920 40.0 MDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRIRRGPFASLDVMIKDGGNVIDLEMFLRDKQLDFIYGNVMEAIGVVVEGVGPKFQLINLVQEKLAVIKSSRGETPLRKSSRENLAFQQSQESLISALKRLHNFSSSSSLSKRVLEDFTSMRRSGVNQPKVKRLVGKYEMGRTIGEGTFAKVKFAKNSETGEHVAIKILDKEKVLKHKMAEQIKREIATMKLIQHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLMNLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITIPEILEDEWFKKDYKPPVFEEQKIANLDDVEAVFKDSEEHHVTEKKEEHPAAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETK* 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10801059 10812731 + CsaV3_4G017300.1 Csa04g01217 526827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01217 639 SMART serkin_6 213 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01217 639 SUPERFAMILY Winged helix DNA-binding domain 2 76 IPR036390 -
Csa04g01217 639 ProSitePatterns Protein kinases ATP-binding region signature. 219 242 IPR017441 GO:0005524
Csa04g01217 639 ProSiteProfiles PCI domain profile. 1 79 IPR000717 -
Csa04g01217 639 Gene3D Transferase(Phosphotransferase) domain 1 293 495 - -
Csa04g01217 639 CDD STKc_SnRK3 212 467 - -
Csa04g01217 639 Pfam PCI domain 2 73 IPR000717 -
Csa04g01217 639 CDD CIPK_C 512 626 - -
Csa04g01217 639 PANTHER - 202 632 - -
Csa04g01217 639 ProSiteProfiles Protein kinase domain profile. 213 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01217 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 332 344 IPR008271 GO:0004672|GO:0006468
Csa04g01217 639 Gene3D - 1 98 - -
Csa04g01217 639 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 202 632 - -
Csa04g01217 639 Pfam Protein kinase domain 213 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01217 639 SMART PINT_4 8 93 IPR000717 -
Csa04g01217 639 Pfam NAF domain 508 567 IPR004041 GO:0007165
Csa04g01217 639 ProSiteProfiles NAF domain profile. 506 530 IPR018451 GO:0007165
Csa04g01217 639 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 8 93 - -
Csa04g01217 639 SUPERFAMILY Protein kinase-like (PK-like) 209 497 IPR011009 -
Csa04g01217 639 Gene3D Phosphorylase Kinase; domain 1 202 292 - -
Csa04g01217 639 Gene3D Kinase associated domain 1, KA1 505 630 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02229 Csa-Chr2:20005697 Csa04g01217 Csa-Chr4:10801059 0 dispersed
Csa04g01217 Csa-Chr4:10801059 Csa06g03811 Csa-Chr6:30243812 0 dispersed
Csa04g01309 Csa-Chr4:13474780 Csa04g01217 Csa-Chr4:10801059 1.01E-43 dispersed
Csa06g00625 Csa-Chr6:5241694 Csa04g01217 Csa-Chr4:10801059 2.99E-89 dispersed
Csa06g00838 Csa-Chr6:6726476 Csa04g01217 Csa-Chr4:10801059 2.22E-48 dispersed
Csa04g01217 Csa-Chr4:10801059 Csa01g02318 Csa-Chr1:20282952 4.85E-163 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78144 PF00069 Pkinase 3.20E-72 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01217 - - csv:101221173 887.486