Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01219 ATGGCTAGAGAATTGAAAACAGGTGAAATTGTTGCACTGAAGAAAATAAGAATGGATAATGAAAGGGAGGGGTTCCCTATTACTGCAATACGCGAAATCAAAATTTTAAAGAAGCTTCATCACGAAAATGTAATCAAGCTGAAAGAGATTGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGGCATTGTAATGAATAGGATGAGTTCTTACTGTATAGCTTATTTGGGCTGTGCAGATGGTAATAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGCCTGGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGATATAAAAGGGTCAAATCTGCTTATTGACAACGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAACTGCTGCTTGGGTCAACCAAATACGGTCCAGCTGTAGATATGTGGTCTGTTGGCTGTATCTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAATTAAACAAGATTTTTGAGCTGTGTGGTGCTCCGGATGAAGTCAATTGGCCTGGGGTTTCTAAAATCCCTTGGTACAATAATTTCAAGCCCACGAGGCCAATGAAGAGACGTATTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTTACACTTGATCCTTCCCAGAGGATATCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACAGATCCATTGCCTTGTGATCCTAAAAGTTTGCCTAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGTCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACACCCACAGCATGCACGCCTTCCACCTATTCAGCAGTCTGGACAAGCACACGCACAAATGCGACCAGTACCTAACCAACCTATTCATGGGTCTCAACAACCAGTTGCTGCAGGGCCTAGCCATCATTTTGTAAAGCCTCGTGGACCCCAGGTCCTGGTAGGTATCCTGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGTCAAGGTGGTTATGGTAACACACAATATGCTCAAGGACGAGGTGGTGCCTATGGGTCTGGTAGCATGTCTGGTGCTGGTCCTCGAGGAGGAGCTGGAGGTGGTGGTGGTTATGGCGTGGGGGCTCCAAATTACCCACAGAATGGTCCATATCCTGGTAGTTCTGGTACTGGTCGTGGCTCCAATGTGA 1434 45.26 MARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPGIVMNRMSSYCIAYLGCADGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQAHAQMRPVPNQPIHGSQQPVAAGPSHHFVKPRGPQVLVGILVEIPLLDTTTQVVVVKVVMVTHNMLKDEVVPMGLVACLVLVLEEELEVVVVMAWGLQITHRMVHILVVLVLVVAPM* 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10816402 10823492 - CsaV3_4G017320.1 Csa04g01219 526829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01219 477 ProSiteProfiles Protein kinase domain profile. 1 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01219 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Csa04g01219 477 MobiDBLite consensus disorder prediction 315 344 - -
Csa04g01219 477 Gene3D Transferase(Phosphotransferase) domain 1 100 342 - -
Csa04g01219 477 MobiDBLite consensus disorder prediction 313 386 - -
Csa04g01219 477 SMART serkin_6 1 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01219 477 CDD STKc_CDK9_like 1 302 - -
Csa04g01219 477 MobiDBLite consensus disorder prediction 351 378 - -
Csa04g01219 477 SUPERFAMILY Protein kinase-like (PK-like) 2 310 IPR011009 -
Csa04g01219 477 Pfam Protein kinase domain 2 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01219 477 Gene3D Phosphorylase Kinase; domain 1 1 99 - -
Csa04g01219 477 PANTHER CELL DIVISION PROTEIN KINASE 1 397 - -
Csa04g01219 477 PANTHER CYCLIN-DEPENDENT KINASE C-2 1 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03950 Csa-Chr3:34536277 Csa04g01219 Csa-Chr4:10816402 0 dispersed
Csa04g01219 Csa-Chr4:10816402 Csa03g01943 Csa-Chr3:15340938 6.56E-105 dispersed
Csa04g01219 Csa-Chr4:10816402 Csa01g02837 Csa-Chr1:24909570 6.18E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78146 PF00069 Pkinase 1.40E-65 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01219 K08819 - csv:101220936 769.229