Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01219 | ATGGCTAGAGAATTGAAAACAGGTGAAATTGTTGCACTGAAGAAAATAAGAATGGATAATGAAAGGGAGGGGTTCCCTATTACTGCAATACGCGAAATCAAAATTTTAAAGAAGCTTCATCACGAAAATGTAATCAAGCTGAAAGAGATTGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGGCATTGTAATGAATAGGATGAGTTCTTACTGTATAGCTTATTTGGGCTGTGCAGATGGTAATAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGCCTGGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGATATAAAAGGGTCAAATCTGCTTATTGACAACGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAACTGCTGCTTGGGTCAACCAAATACGGTCCAGCTGTAGATATGTGGTCTGTTGGCTGTATCTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAATTAAACAAGATTTTTGAGCTGTGTGGTGCTCCGGATGAAGTCAATTGGCCTGGGGTTTCTAAAATCCCTTGGTACAATAATTTCAAGCCCACGAGGCCAATGAAGAGACGTATTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTTACACTTGATCCTTCCCAGAGGATATCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACAGATCCATTGCCTTGTGATCCTAAAAGTTTGCCTAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGTCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACACCCACAGCATGCACGCCTTCCACCTATTCAGCAGTCTGGACAAGCACACGCACAAATGCGACCAGTACCTAACCAACCTATTCATGGGTCTCAACAACCAGTTGCTGCAGGGCCTAGCCATCATTTTGTAAAGCCTCGTGGACCCCAGGTCCTGGTAGGTATCCTGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGTCAAGGTGGTTATGGTAACACACAATATGCTCAAGGACGAGGTGGTGCCTATGGGTCTGGTAGCATGTCTGGTGCTGGTCCTCGAGGAGGAGCTGGAGGTGGTGGTGGTTATGGCGTGGGGGCTCCAAATTACCCACAGAATGGTCCATATCCTGGTAGTTCTGGTACTGGTCGTGGCTCCAATGTGA | 1434 | 45.26 | MARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPGIVMNRMSSYCIAYLGCADGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQAHAQMRPVPNQPIHGSQQPVAAGPSHHFVKPRGPQVLVGILVEIPLLDTTTQVVVVKVVMVTHNMLKDEVVPMGLVACLVLVLEEELEVVVVMAWGLQITHRMVHILVVLVLVVAPM* | 478 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10816402 | 10823492 | - | CsaV3_4G017320.1 | Csa04g01219 | 526829 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01219 | 477 | ProSiteProfiles | Protein kinase domain profile. | 1 | 302 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g01219 | 477 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 137 | 149 | IPR008271 | GO:0004672|GO:0006468 | |
Csa04g01219 | 477 | MobiDBLite | consensus disorder prediction | 315 | 344 | - | - | |
Csa04g01219 | 477 | Gene3D | Transferase(Phosphotransferase) domain 1 | 100 | 342 | - | - | |
Csa04g01219 | 477 | MobiDBLite | consensus disorder prediction | 313 | 386 | - | - | |
Csa04g01219 | 477 | SMART | serkin_6 | 1 | 302 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g01219 | 477 | CDD | STKc_CDK9_like | 1 | 302 | - | - | |
Csa04g01219 | 477 | MobiDBLite | consensus disorder prediction | 351 | 378 | - | - | |
Csa04g01219 | 477 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 310 | IPR011009 | - | |
Csa04g01219 | 477 | Pfam | Protein kinase domain | 2 | 302 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g01219 | 477 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 99 | - | - | |
Csa04g01219 | 477 | PANTHER | CELL DIVISION PROTEIN KINASE | 1 | 397 | - | - | |
Csa04g01219 | 477 | PANTHER | CYCLIN-DEPENDENT KINASE C-2 | 1 | 397 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03950 | Csa-Chr3:34536277 | Csa04g01219 | Csa-Chr4:10816402 | 0 | dispersed | |
Csa04g01219 | Csa-Chr4:10816402 | Csa03g01943 | Csa-Chr3:15340938 | 6.56E-105 | dispersed | |
Csa04g01219 | Csa-Chr4:10816402 | Csa01g02837 | Csa-Chr1:24909570 | 6.18E-103 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78146 | PF00069 | Pkinase | 1.40E-65 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01219 | K08819 | - | csv:101220936 | 769.229 |