Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01228 ATGCCGACGAGTTACAGGCCTGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTGCTATTTCTACGTCGCCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTGATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAACTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACTCCAACCTCAATCTTGGGGCTGCCGATTGGGCAGCATATGAGCTGCAGAGGAAAAGATAGCCAAAGTGAAGATGCTGTGAAACCTTACACTCCAACCACTTTGGACATAGATGTTGGATACTTTGAGTTGGTCATTAAGATGTATCCACAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAATATGAACCTAATGAAGTAGAGGCCTTTGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAATGAAGTGGATCGCACCAACGTGCATCTTATCTATGCTAATGTTACTTACGAAGACATTCTTCTGAAGGAAGAATTGGATAGTCTTGCAACTACGTTCCCTACCCGTTTTTCTATCTACTATGTGCTCAATCAGCCTCCAGAAGAATGGGATGGTGGTGTTGGCTTTGTAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTCCGGATTTTGAGGTGCGGACCACCCCCGATGAACAAAGCTATGGCTGCTTACCTGAACAGTATTGGCTACACTTCTCAAATGCAGTTCCAGTTCTAA 837 46.12 MPTSYRPELLTVAVAVVAVGVATACYFYVAKKSKPKGCLDPDNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHMSCRGKDSQSEDAVKPYTPTTLDIDVGYFELVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYEPNEVEAFGMLAGGTGITPMFQVARAILENEVDRTNVHLIYANVTYEDILLKEELDSLATTFPTRFSIYYVLNQPPEEWDGGVGFVTEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNSIGYTSQMQFQF* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10878865 10881743 - CsaV3_4G017410.1 Csa04g01228 526838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01228 278 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Csa04g01228 278 Pfam Oxidoreductase FAD-binding domain 47 145 IPR008333 -
Csa04g01228 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 154 173 IPR001709 GO:0016491
Csa04g01228 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 192 203 IPR001709 GO:0016491
Csa04g01228 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 248 256 IPR001709 GO:0016491
Csa04g01228 278 CDD cyt_b5_reduct_like 47 278 - -
Csa04g01228 278 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 146 IPR017927 GO:0016491
Csa04g01228 278 SUPERFAMILY Riboflavin synthase domain-like 38 148 IPR017938 -
Csa04g01228 278 PRINTS Cytochrome B5 reductase signature 73 84 - -
Csa04g01228 278 PRINTS Cytochrome B5 reductase signature 95 102 - -
Csa04g01228 278 PRINTS Cytochrome B5 reductase signature 131 145 - -
Csa04g01228 278 PRINTS Cytochrome B5 reductase signature 154 173 - -
Csa04g01228 278 PRINTS Cytochrome B5 reductase signature 192 203 - -
Csa04g01228 278 PRINTS Cytochrome B5 reductase signature 248 256 - -
Csa04g01228 278 Pfam Oxidoreductase NAD-binding domain 155 261 IPR001433 GO:0016491
Csa04g01228 278 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 134 272 IPR039261 -
Csa04g01228 278 Gene3D - 136 278 IPR039261 -
Csa04g01228 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 3 278 IPR001834 GO:0016491
Csa04g01228 278 Gene3D Translation factors 37 135 - -
Csa04g01228 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 3 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01228 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101219272 564.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01228 Csa-Chr4:10878865 Csa04g01877 Csa-Chr4:18545887 3.63E-145 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g00025 . 1 135 NADPH P450 reductases AT5G53560 77.8 2.6e-58 221.5
Csa03g01102 . 68 200 NADPH P450 reductases AT5G53560 69.2 6.2e-52 200.3
Csa02g00931 . 1 135 NADPH P450 reductases AT5G53560 66.7 9.9e-50 193.0
Csa03g02688 . 6 134 NADPH P450 reductases AT5G53560 64.3 1.9e-45 178.7
Csa03g01102 . 68 199 NADPH P450 reductases AT5G48810 64.9 5.6e-48 187.2
Csa02g00931 . 1 134 NADPH P450 reductases AT5G48810 61.8 1.8e-46 182.2
Csa05g00025 . 1 134 NADPH P450 reductases AT5G48810 60.3 4.5e-45 177.6
Csa03g02688 . 1 132 NADPH P450 reductases AT5G48810 62.2 7.6e-45 176.8
Csa03g01102 . 89 202 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Csa02g00931 . 13 135 NADPH P450 reductases AT2G32720 72.7 2.1e-47 185.3
Csa03g02688 . 21 132 NADPH P450 reductases AT2G32720 70.5 6.4e-41 163.7
Csa05g00025 . 22 133 NADPH P450 reductases AT2G32720 65.2 2.1e-39 158.7
Csa06g02086 . 1 130 NADPH P450 reductases AT1G26340 55.2 2.3e-38 155.2
Csa04g01877 . 2 282 NADPH P450 reductases AT5G17770 82.2 4.3e-132 467.6
Csa03g03663 CCT 2 281 NADPH P450 reductases AT5G17770 77.5 1.3e-125 446.0
Csa04g01228 . 6 279 NADPH P450 reductases AT5G17770 75.2 1.0e-117 419.9
Csa05g00025 . 1 135 NADPH P450 reductases AT5G53560 77.8 2.6e-58 221.5
Csa03g01102 . 68 200 NADPH P450 reductases AT5G53560 69.2 6.2e-52 200.3
Csa02g00931 . 1 135 NADPH P450 reductases AT5G53560 66.7 9.9e-50 193.0
Csa03g02688 . 6 134 NADPH P450 reductases AT5G53560 64.3 1.9e-45 178.7
Csa03g01102 . 68 199 NADPH P450 reductases AT5G48810 64.9 5.6e-48 187.2
Csa02g00931 . 1 134 NADPH P450 reductases AT5G48810 61.8 1.8e-46 182.2
Csa05g00025 . 1 134 NADPH P450 reductases AT5G48810 60.3 4.5e-45 177.6
Csa03g02688 . 1 132 NADPH P450 reductases AT5G48810 62.2 7.6e-45 176.8
Csa03g01102 . 89 202 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Csa02g00931 . 13 135 NADPH P450 reductases AT2G32720 72.7 2.1e-47 185.3
Csa03g02688 . 21 132 NADPH P450 reductases AT2G32720 70.5 6.4e-41 163.7
Csa05g00025 . 22 133 NADPH P450 reductases AT2G32720 65.2 2.1e-39 158.7
Csa06g02086 . 1 130 NADPH P450 reductases AT1G26340 55.2 2.3e-38 155.2
Csa04g01877 . 2 282 NADPH P450 reductases AT5G17770 82.2 4.3e-132 467.6
Csa03g03663 CCT 2 281 NADPH P450 reductases AT5G17770 77.5 1.3e-125 446.0
Csa04g01228 . 6 279 NADPH P450 reductases AT5G17770 75.2 1.0e-117 419.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01228 Csa_Chr04 FPKM 29.008486 31.103033 28.010815 27.565142 28.997545 34.692333 29.683901 32.522308 29.547091 31.719877