Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01228 ATGCCGACGAGTTACAGGCCTGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTGCTATTTCTACGTCGCCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTGATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAACTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACTCCAACCTCAATCTTGGGGCTGCCGATTGGGCAGCATATGAGCTGCAGAGGAAAAGATAGCCAAAGTGAAGATGCTGTGAAACCTTACACTCCAACCACTTTGGACATAGATGTTGGATACTTTGAGTTGGTCATTAAGATGTATCCACAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAATATGAACCTAATGAAGTAGAGGCCTTTGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAATGAAGTGGATCGCACCAACGTGCATCTTATCTATGCTAATGTTACTTACGAAGACATTCTTCTGAAGGAAGAATTGGATAGTCTTGCAACTACGTTCCCTACCCGTTTTTCTATCTACTATGTGCTCAATCAGCCTCCAGAAGAATGGGATGGTGGTGTTGGCTTTGTAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTCCGGATTTTGAGGTGCGGACCACCCCCGATGAACAAAGCTATGGCTGCTTACCTGAACAGTATTGGCTACACTTCTCAAATGCAGTTCCAGTTCTAA 837 46.12 MPTSYRPELLTVAVAVVAVGVATACYFYVAKKSKPKGCLDPDNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHMSCRGKDSQSEDAVKPYTPTTLDIDVGYFELVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYEPNEVEAFGMLAGGTGITPMFQVARAILENEVDRTNVHLIYANVTYEDILLKEELDSLATTFPTRFSIYYVLNQPPEEWDGGVGFVTEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNSIGYTSQMQFQF* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10878865 10881743 - CsaV3_4G017410.1 Csa04g01228 526838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01228 278 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Csa04g01228 278 Pfam Oxidoreductase FAD-binding domain 47 145 IPR008333 -
Csa04g01228 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 154 173 IPR001709 GO:0016491
Csa04g01228 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 192 203 IPR001709 GO:0016491
Csa04g01228 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 248 256 IPR001709 GO:0016491
Csa04g01228 278 CDD cyt_b5_reduct_like 47 278 - -
Csa04g01228 278 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 146 IPR017927 GO:0016491
Csa04g01228 278 SUPERFAMILY Riboflavin synthase domain-like 38 148 IPR017938 -
Csa04g01228 278 PRINTS Cytochrome B5 reductase signature 73 84 - -
Csa04g01228 278 PRINTS Cytochrome B5 reductase signature 95 102 - -
Csa04g01228 278 PRINTS Cytochrome B5 reductase signature 131 145 - -
Csa04g01228 278 PRINTS Cytochrome B5 reductase signature 154 173 - -
Csa04g01228 278 PRINTS Cytochrome B5 reductase signature 192 203 - -
Csa04g01228 278 PRINTS Cytochrome B5 reductase signature 248 256 - -
Csa04g01228 278 Pfam Oxidoreductase NAD-binding domain 155 261 IPR001433 GO:0016491
Csa04g01228 278 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 134 272 IPR039261 -
Csa04g01228 278 Gene3D - 136 278 IPR039261 -
Csa04g01228 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 3 278 IPR001834 GO:0016491
Csa04g01228 278 Gene3D Translation factors 37 135 - -
Csa04g01228 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 3 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01228 Csa-Chr4:10878865 Csa04g01877 Csa-Chr4:18545887 3.63E-145 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01228 K00326 - csv:101219272 564.688