Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01245 ATGAAACAACGGGGAGGCTTTAATTCAGAATCTCTAGTAACCTTATGGGTATTTTGCACATCTCTAGCTCTAGCTCTAGCTCTAGCTCTAGCTCCAATTGTTGGATCAGTTTCGTCTCCAACGCACCAGTTCCGTGGAATTTCTCCTCAAGATGAGATGTATTACAAATCGTTCGACATGATCAAATGTAGAGACGGTTCCAAAAAATTTTCCAAGGCTCAGCTTAACGATAATTTCTGCGATTGCCCTGATGGCACAGATGAACCTGGCACATCTGCATGCTCGAATGGGAAGTTCTATTGTCGAAATGCAGGGCATGTTCCACTGTTGTTGTTTTCTTCAAGGGTGAACGACAATATTTGTGATTGTTGTGATGGAAGTGACGAATATGACAGCAAAGTCAAATGTCCAAATACGTGTTGGGAGGCTGGGAAAGTGGCAAGAGATAAATTGAAGAAAAGGATTTCAACCTTTGAAGAGGGTGTTAAAATTAGAAAACTAGATGTTGAGCATGCAAAAAAGGCAATAATCAAAGATGAGGCAGAGCTATTGGAGTTGAAAAATGAGGAAAAAGTATTAAAAGGGCTCGTTGAACAACTTAAAGAGCGCAAAGAGCAAATTGATAAGGTAGAAGAGGAGGAGAGATTATTGAAAGAAAAAGAAGCAAAGAAACATTTGGAGAGAGAAAATGATGAGACTAGAAAAATTGAGTCAACAGAAACAACTGATGTTGGGGAAAGCAAAACTCACGAGGAAGACAATTGGGAGAAAAATGAAGCTACAAAACATTATGACAAGGAGTATAAACAAGGAGAAGGCAACGATGATGATAAAATTGGTAATTGGGATGACTCTGCTTCAGATAAGGCTAGGATGGAAGAAGTTGATTCAGAACTTGAAGCTCACCTTTCTAATAAACCTGAAACAGAAGCATCATTGCCGAAAGAGGATACAGCAGTAGAGAAGGACCCACTGGCTAAATCTGAAACTGGAGAAAGTGCTGAAACTAAAGAATCATCTGAAGAAGTCCTGAAAAAGAATGATGGTAGTCCAGAGTTGTCTAAGGAAGAGTTGGGCCGCCTTGTTGCTTCTCGTTGGACAGGAGAAAATACTGAAGAACAGTCGAGAAACAAGGATAGTACGAATGATAGTGATGAGGAAAGTCATGATATCTCAAAAGAAGCCTATGAAAATGACGGTTATGCTTCAGAGACCGATGATGATAACCAAAGATACGATGATGACTTAGAGGGTGATTTGGAAGATACCAGAGACGAATTTCATGATGATTCTACTTCATCTGAGAGATATTATTCAGATACAGAAATGGATTCAACAGATGTGGAAACCCAAAGTAACCCCTCCTGGCTTGAGAAGATACAAAAAACAGTTCGAAATGTCCTCAAAGCTGTTAATATATTCCAGGCTCCAGTGAACCAATCAGATGCTGCTAATGTGCGCAAGGAATATGAGGAGTCCAGTGCCAAGTTAACGAAAATTCAGTCAAGGATCTCAAGTTTATCTCAAAAGCTAAAGAATGATTTTGGTCCAGAGAAGGAGTTCTATTCATTCTATGACCAATGTTTTGAAATCAAGGAGAACAAATACGTTTACAAAATCTGTCCTTACAAACAAGCTTCACAGGTTGAGGGGCATTCAACAACTCGTTTGGGGCGCTGGGATAAATTTGAAGATTCATACAGGGTTATGTTTTTTTCAAGTGGGGATAAGTGCTGGAATGGACCTGATAGAAGCTTAAAGGTTAAGCTAAGATGTGGGGTTAAAAATGGCATAACCGATGTAGATGAACCAAGCCGTTGCGAGTACGTGGCATTGTTATCAACCCCAGCTGTTTGTGTAGAGGAAAAGCTTCAGGAACTGAAAAACAAGTTGGACATGCTGAGTAAAGAAGAGGCAGAGAAGCATGATGAACTTTGA 1938 39.89 MKQRGGFNSESLVTLWVFCTSLALALALALAPIVGSVSSPTHQFRGISPQDEMYYKSFDMIKCRDGSKKFSKAQLNDNFCDCPDGTDEPGTSACSNGKFYCRNAGHVPLLLFSSRVNDNICDCCDGSDEYDSKVKCPNTCWEAGKVARDKLKKRISTFEEGVKIRKLDVEHAKKAIIKDEAELLELKNEEKVLKGLVEQLKERKEQIDKVEEEERLLKEKEAKKHLERENDETRKIESTETTDVGESKTHEEDNWEKNEATKHYDKEYKQGEGNDDDKIGNWDDSASDKARMEEVDSELEAHLSNKPETEASLPKEDTAVEKDPLAKSETGESAETKESSEEVLKKNDGSPELSKEELGRLVASRWTGENTEEQSRNKDSTNDSDEESHDISKEAYENDGYASETDDDNQRYDDDLEGDLEDTRDEFHDDSTSSERYYSDTEMDSTDVETQSNPSWLEKIQKTVRNVLKAVNIFQAPVNQSDAANVRKEYEESSAKLTKIQSRISSLSQKLKNDFGPEKEFYSFYDQCFEIKENKYVYKICPYKQASQVEGHSTTRLGRWDKFEDSYRVMFFSSGDKCWNGPDRSLKVKLRCGVKNGITDVDEPSRCEYVALLSTPAVCVEEKLQELKNKLDMLSKEEAEKHDEL* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10992025 11001517 + CsaV3_4G017580.1 Csa04g01245 526855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01245 645 PANTHER N-LINKED OLIGOSACCHARIDE PROCESSING 26 645 IPR039794 -
Csa04g01245 645 MobiDBLite consensus disorder prediction 222 453 - -
Csa04g01245 645 MobiDBLite consensus disorder prediction 425 443 - -
Csa04g01245 645 MobiDBLite consensus disorder prediction 222 359 - -
Csa04g01245 645 MobiDBLite consensus disorder prediction 371 407 - -
Csa04g01245 645 ProSiteProfiles MRH domain profile. 526 621 IPR044865 -
Csa04g01245 645 PANTHER BNACNNG14010D PROTEIN 26 645 - -
Csa04g01245 645 SUPERFAMILY Mannose 6-phosphate receptor domain 526 619 IPR009011 -
Csa04g01245 645 Gene3D - 521 620 IPR009011 -
Csa04g01245 645 MobiDBLite consensus disorder prediction 408 424 - -
Csa04g01245 645 Coils Coil 617 644 - -
Csa04g01245 645 Pfam Glucosidase II beta subunit-like 37 175 IPR028146 -
Csa04g01245 645 Coils Coil 169 236 - -
Csa04g01245 645 Pfam Glucosidase II beta subunit-like protein 487 645 IPR036607 -
Csa04g01245 645 Coils Coil 483 503 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01245 Csa-Chr4:10992025 Csa07g00328 Csa-Chr7:2436742 2.12E-45 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01245 K08288 - csv:101221877 1268.83