Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01292 ATGTCTCGCCGAGGCGGGGGCGGTAGTGGCGGCGGTGGTGGTCGTGGTTCGGGTGGTCGTGGTGGACAGCCCTCTCCGGCTATATCTCGCGGTGGAAGAGGTGGAAGAGGTGGACGAGGTGGACGAGGCGGACGAGAGGGTGGAGGGAGAGATGGAGGCAGGGTAGGTTATCCAGCCACTCAGCAATTCCATTCTCCGACTCCTCAGCCTACTCCGGTTGTTTCTCCTCCTCCTCGGCCTACTCCGGTTGCTTCCGCTCCTCCTCCCCAGACGTCAACGGGAGCATCTTCTGCTTCCTCATCGGGAACTGCTACGCTCTTACAGCCTGAGGTTTCTCAGATCGAAGCACAAGTGGAGAAGGTGACACCGACGCCGCAGAACGTTCCGCCGTCTTCATCGAAAGACTTGACTGTGGCGAAGAGGCCGGGATATGGAACCGCTGGTCGAAAAGTTGTTGTTCGTGCCAATCATTTCCTGGTTCAAGTTGCAGACAAAGATCTCCACCATTACGATGTTTCAATCACACCTGAGGTTACATCCAAAAGGGTCTGCCGAGATATAGTAAACCAGCTTGCAAATACGTATAGAGAATCTCATTTAGGTGGAAGATATCTAGCATATGATGGAGGAAAAGGTGTTTATGCTGCTGGTCAACTTCCATTTTCGTCCAAAGAGTTCATGATTAAATTAGTCCGTAAAGATGGTGCTGGGTCTTCTCAACCAACAAGGAAAGAACGAGAGTTCAAAGTATCTATCAAATTTGCCTCCAAACCAGACCTCCATCATCTACAACAGTTTATACATAGACAGCAGCGAGATGCACCACAGGAGACTATACAAGTTCTTGATGTTGTTTTGAGAACAAAACCATCTGTCGATTACACAGTTGTTGGAAGGTCATTTTTCTCGCATGAACTGGGGCAGCCAGGTGAACTTGGTAATGGTGTTGAGTATTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGGTTTATCTTTAAATATAGATGTGTCAGCTAGATCATTTTATGAACCAATTAGTGTGACAGAATATGTTGTTAAACACTTCAACCTAAGGATTCTCTCAAAGCCAATGTCTGATCAGGATTGTCGCAAGATCAAAAAGGTACTTAGAGGAGTGAAGGTTGGATTAATGTGTAGGGAGCATGCCAGGACCTACAAGATTACTGGGATATCATCAGAGCCTGTTAATAGATTAATGTTTACTCTTGATGATCAGAAAACCCGAGTCTCTGTTGCACAGTACTTTCATGAAAAATATGGCGTGGCACTCAAATATCCATTTCTACCAGCTATACAAGCTGGTAATGATGCCAAGCCGGTTTATTTGCCTATGGAGGTTTGTAAGATTGTTGCTGGGCAGAGATATACCAAAAAATTGAATGAACGCCAAGTAACTCAGATGCTAAGAGCGACTTGTCAGAGACCTCCGAACAGGGCAGATAGTATAGGGAAGATGATTGGTAAGATTGATCATTCTAAAGATGACATTGTCAATGATTTTGGCATTGTTGTATCATCAAGGTTATGTGATGTGGGTGCTCGTGTTTTACCGTCCCCGATGCTAAAATATCATGATACTGGCAAAGAATCACGAGTTGATCCAAGGATGGGTCAGTGGAATATGATTAACAAGAAAATGATCAATGGTGGTAGAGTTGATTATTGGGGCTGTGTGAACTTCTCTTCACGGTTGGATCCAGGCTTGCCATCTGAATTTTGCCATCAGTTGGTTAGCATGTGCAATAGCAAAGGAATGGTTTTCAACCCTACACCGCTGTTTCCTGTACGTAATGCACATGCAAACCAAATAGATGGTGCACTTAGAGACATTCATAGCCAGTCTTTAAAAAGTTTGGGACCCCAGGGCAAATCTCTTCAGTTGCTCATAATTATTTTACCTGATATTTCTGGTTCCTATGGGAAGATCAAAAGGATATGTGAGACTGAGCTTGGAATTGTTTCACAATGTTGCCAACCTAGGCAAGCACAAAAGCTGAACAAGCAGTACTTTGAAAATGTGGCCCTTAAAATTAACGTTAAGGTTGGGGGAAGAAACAATGCCCTAAATGATGCTATTCAGCGGAAAATTCCACTTGTTTCAGATCGGCCTACAATAATCTTTGGAGCAGATGTAACACACCCACAACCTGGAGAGGACTCCAGTCCTTCAATAGCAGCTGTTGTTGCCTCAATGGACTGGCCCGAGGTAACGAAGTATAGAGGAATTGTTTCAGCTCAGGGCCACCGGGATGAAATTATACAAGATTTGTACAGAGAAGATAAAGATCCTCAAAAAGGGTTGGTGTGTGCAGGAATGATCAGGGAGCTGTTCATTGCTTTTAGAAGGTCAACAAATCTGAAACCGCACAGAATAATATTTTACAGAGATGGTGTAAGTGAAGGACAGTTCTCACAAGTTTTATTTTATGAGGTGGATGCAATTAGGAAGGCATGTGCCTCTCTTGAAGAGGGTTACCAGCCTCCGATTACCTTTGTTGTGGTGCAAAAGAGACATCATACCCGTCTTTTCCCTATCAGCGGTGCGGATACTGATCGGAGTGGAAACATCCTTCCAGGTACTGTTGTTGACACCAATATTTGCCATCCAACTGAATTTGATTTCTATTTAAACAGTCATGCCGGCATTCAGGGGACGAGTAGGCCAACACATTATCACGTTTTGTATGATGAAAACAAATTCACTGCCGATGCAATGCAGATGCTTACTAATAATCTTTGCTACACGTATGCAAGGTGCACTCGGTCAGTTTCCATTGTTCCACCAGCATACTATGCACATCTTGCAGCCTTTCGTGCCCGTTATTACATAGAGGGTGATTCATCTGACAGCGGTTCCACAAGTTCAGGTGGTGGGAATGTAGATATTCAACGGCTGCCGAGCATAAAAGAAAATGTGAAGGATGTGATGTTTTACTGTTGA 2970 44.44 MSRRGGGGSGGGGGRGSGGRGGQPSPAISRGGRGGRGGRGGRGGREGGGRDGGRVGYPATQQFHSPTPQPTPVVSPPPRPTPVASAPPPQTSTGASSASSSGTATLLQPEVSQIEAQVEKVTPTPQNVPPSSSKDLTVAKRPGYGTAGRKVVVRANHFLVQVADKDLHHYDVSITPEVTSKRVCRDIVNQLANTYRESHLGGRYLAYDGGKGVYAAGQLPFSSKEFMIKLVRKDGAGSSQPTRKEREFKVSIKFASKPDLHHLQQFIHRQQRDAPQETIQVLDVVLRTKPSVDYTVVGRSFFSHELGQPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPISVTEYVVKHFNLRILSKPMSDQDCRKIKKVLRGVKVGLMCREHARTYKITGISSEPVNRLMFTLDDQKTRVSVAQYFHEKYGVALKYPFLPAIQAGNDAKPVYLPMEVCKIVAGQRYTKKLNERQVTQMLRATCQRPPNRADSIGKMIGKIDHSKDDIVNDFGIVVSSRLCDVGARVLPSPMLKYHDTGKESRVDPRMGQWNMINKKMINGGRVDYWGCVNFSSRLDPGLPSEFCHQLVSMCNSKGMVFNPTPLFPVRNAHANQIDGALRDIHSQSLKSLGPQGKSLQLLIIILPDISGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNALNDAIQRKIPLVSDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQGHRDEIIQDLYREDKDPQKGLVCAGMIRELFIAFRRSTNLKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEEGYQPPITFVVVQKRHHTRLFPISGADTDRSGNILPGTVVDTNICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDSSDSGSTSSGGGNVDIQRLPSIKENVKDVMFYC* 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13093657 13101735 + CsaV3_4G022010.1 Csa04g01292 526902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01292 989 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 56 974 - -
Csa04g01292 989 MobiDBLite consensus disorder prediction 120 134 - -
Csa04g01292 989 Pfam Piwi domain 639 953 IPR003165 GO:0003676
Csa04g01292 989 MobiDBLite consensus disorder prediction 1 107 - -
Csa04g01292 989 MobiDBLite consensus disorder prediction 88 107 - -
Csa04g01292 989 Pfam N-terminal domain of argonaute 149 286 IPR032474 -
Csa04g01292 989 MobiDBLite consensus disorder prediction 69 87 - -
Csa04g01292 989 PANTHER PROTEIN ARGONAUTE 1A 56 974 - -
Csa04g01292 989 CDD Piwi_ago-like 506 953 IPR045246 -
Csa04g01292 989 SMART PAZ_2_a_3 357 483 IPR003100 GO:0005515
Csa04g01292 989 SUPERFAMILY Ribonuclease H-like 633 955 IPR012337 -
Csa04g01292 989 Pfam PAZ domain 371 478 IPR003100 GO:0005515
Csa04g01292 989 Pfam Argonaute linker 2 domain 488 533 IPR032472 -
Csa04g01292 989 ProSiteProfiles PAZ domain profile. 348 461 IPR003100 GO:0005515
Csa04g01292 989 SMART DUF1785_2 295 347 IPR014811 -
Csa04g01292 989 CDD PAZ_argonaute_like 347 460 - -
Csa04g01292 989 SUPERFAMILY PAZ domain 344 501 IPR036085 GO:0005515
Csa04g01292 989 SMART Piwi_a_2 637 954 IPR003165 GO:0003676
Csa04g01292 989 Pfam Argonaute linker 1 domain 297 346 IPR014811 -
Csa04g01292 989 Gene3D - 706 989 IPR036397 GO:0003676
Csa04g01292 989 MobiDBLite consensus disorder prediction 120 141 - -
Csa04g01292 989 Gene3D - 525 700 - -
Csa04g01292 989 Pfam Mid domain of argonaute 544 622 IPR032473 -
Csa04g01292 989 ProSiteProfiles Piwi domain profile. 637 954 IPR003165 GO:0003676
Csa04g01292 989 Gene3D paz domain 342 465 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01424 Csa-Chr1:9770482 Csa04g01292 Csa-Chr4:13093657 0 dispersed
Csa03g01284 Csa-Chr3:9816222 Csa04g01292 Csa-Chr4:13093657 0 dispersed
Csa04g01292 Csa-Chr4:13093657 Csa06g02394 Csa-Chr6:21398073 2.09E-147 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01292 K11593 - csv:116403556 1839.7