Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01292 | ATGTCTCGCCGAGGCGGGGGCGGTAGTGGCGGCGGTGGTGGTCGTGGTTCGGGTGGTCGTGGTGGACAGCCCTCTCCGGCTATATCTCGCGGTGGAAGAGGTGGAAGAGGTGGACGAGGTGGACGAGGCGGACGAGAGGGTGGAGGGAGAGATGGAGGCAGGGTAGGTTATCCAGCCACTCAGCAATTCCATTCTCCGACTCCTCAGCCTACTCCGGTTGTTTCTCCTCCTCCTCGGCCTACTCCGGTTGCTTCCGCTCCTCCTCCCCAGACGTCAACGGGAGCATCTTCTGCTTCCTCATCGGGAACTGCTACGCTCTTACAGCCTGAGGTTTCTCAGATCGAAGCACAAGTGGAGAAGGTGACACCGACGCCGCAGAACGTTCCGCCGTCTTCATCGAAAGACTTGACTGTGGCGAAGAGGCCGGGATATGGAACCGCTGGTCGAAAAGTTGTTGTTCGTGCCAATCATTTCCTGGTTCAAGTTGCAGACAAAGATCTCCACCATTACGATGTTTCAATCACACCTGAGGTTACATCCAAAAGGGTCTGCCGAGATATAGTAAACCAGCTTGCAAATACGTATAGAGAATCTCATTTAGGTGGAAGATATCTAGCATATGATGGAGGAAAAGGTGTTTATGCTGCTGGTCAACTTCCATTTTCGTCCAAAGAGTTCATGATTAAATTAGTCCGTAAAGATGGTGCTGGGTCTTCTCAACCAACAAGGAAAGAACGAGAGTTCAAAGTATCTATCAAATTTGCCTCCAAACCAGACCTCCATCATCTACAACAGTTTATACATAGACAGCAGCGAGATGCACCACAGGAGACTATACAAGTTCTTGATGTTGTTTTGAGAACAAAACCATCTGTCGATTACACAGTTGTTGGAAGGTCATTTTTCTCGCATGAACTGGGGCAGCCAGGTGAACTTGGTAATGGTGTTGAGTATTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGGTTTATCTTTAAATATAGATGTGTCAGCTAGATCATTTTATGAACCAATTAGTGTGACAGAATATGTTGTTAAACACTTCAACCTAAGGATTCTCTCAAAGCCAATGTCTGATCAGGATTGTCGCAAGATCAAAAAGGTACTTAGAGGAGTGAAGGTTGGATTAATGTGTAGGGAGCATGCCAGGACCTACAAGATTACTGGGATATCATCAGAGCCTGTTAATAGATTAATGTTTACTCTTGATGATCAGAAAACCCGAGTCTCTGTTGCACAGTACTTTCATGAAAAATATGGCGTGGCACTCAAATATCCATTTCTACCAGCTATACAAGCTGGTAATGATGCCAAGCCGGTTTATTTGCCTATGGAGGTTTGTAAGATTGTTGCTGGGCAGAGATATACCAAAAAATTGAATGAACGCCAAGTAACTCAGATGCTAAGAGCGACTTGTCAGAGACCTCCGAACAGGGCAGATAGTATAGGGAAGATGATTGGTAAGATTGATCATTCTAAAGATGACATTGTCAATGATTTTGGCATTGTTGTATCATCAAGGTTATGTGATGTGGGTGCTCGTGTTTTACCGTCCCCGATGCTAAAATATCATGATACTGGCAAAGAATCACGAGTTGATCCAAGGATGGGTCAGTGGAATATGATTAACAAGAAAATGATCAATGGTGGTAGAGTTGATTATTGGGGCTGTGTGAACTTCTCTTCACGGTTGGATCCAGGCTTGCCATCTGAATTTTGCCATCAGTTGGTTAGCATGTGCAATAGCAAAGGAATGGTTTTCAACCCTACACCGCTGTTTCCTGTACGTAATGCACATGCAAACCAAATAGATGGTGCACTTAGAGACATTCATAGCCAGTCTTTAAAAAGTTTGGGACCCCAGGGCAAATCTCTTCAGTTGCTCATAATTATTTTACCTGATATTTCTGGTTCCTATGGGAAGATCAAAAGGATATGTGAGACTGAGCTTGGAATTGTTTCACAATGTTGCCAACCTAGGCAAGCACAAAAGCTGAACAAGCAGTACTTTGAAAATGTGGCCCTTAAAATTAACGTTAAGGTTGGGGGAAGAAACAATGCCCTAAATGATGCTATTCAGCGGAAAATTCCACTTGTTTCAGATCGGCCTACAATAATCTTTGGAGCAGATGTAACACACCCACAACCTGGAGAGGACTCCAGTCCTTCAATAGCAGCTGTTGTTGCCTCAATGGACTGGCCCGAGGTAACGAAGTATAGAGGAATTGTTTCAGCTCAGGGCCACCGGGATGAAATTATACAAGATTTGTACAGAGAAGATAAAGATCCTCAAAAAGGGTTGGTGTGTGCAGGAATGATCAGGGAGCTGTTCATTGCTTTTAGAAGGTCAACAAATCTGAAACCGCACAGAATAATATTTTACAGAGATGGTGTAAGTGAAGGACAGTTCTCACAAGTTTTATTTTATGAGGTGGATGCAATTAGGAAGGCATGTGCCTCTCTTGAAGAGGGTTACCAGCCTCCGATTACCTTTGTTGTGGTGCAAAAGAGACATCATACCCGTCTTTTCCCTATCAGCGGTGCGGATACTGATCGGAGTGGAAACATCCTTCCAGGTACTGTTGTTGACACCAATATTTGCCATCCAACTGAATTTGATTTCTATTTAAACAGTCATGCCGGCATTCAGGGGACGAGTAGGCCAACACATTATCACGTTTTGTATGATGAAAACAAATTCACTGCCGATGCAATGCAGATGCTTACTAATAATCTTTGCTACACGTATGCAAGGTGCACTCGGTCAGTTTCCATTGTTCCACCAGCATACTATGCACATCTTGCAGCCTTTCGTGCCCGTTATTACATAGAGGGTGATTCATCTGACAGCGGTTCCACAAGTTCAGGTGGTGGGAATGTAGATATTCAACGGCTGCCGAGCATAAAAGAAAATGTGAAGGATGTGATGTTTTACTGTTGA | 2970 | 44.44 | MSRRGGGGSGGGGGRGSGGRGGQPSPAISRGGRGGRGGRGGRGGREGGGRDGGRVGYPATQQFHSPTPQPTPVVSPPPRPTPVASAPPPQTSTGASSASSSGTATLLQPEVSQIEAQVEKVTPTPQNVPPSSSKDLTVAKRPGYGTAGRKVVVRANHFLVQVADKDLHHYDVSITPEVTSKRVCRDIVNQLANTYRESHLGGRYLAYDGGKGVYAAGQLPFSSKEFMIKLVRKDGAGSSQPTRKEREFKVSIKFASKPDLHHLQQFIHRQQRDAPQETIQVLDVVLRTKPSVDYTVVGRSFFSHELGQPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPISVTEYVVKHFNLRILSKPMSDQDCRKIKKVLRGVKVGLMCREHARTYKITGISSEPVNRLMFTLDDQKTRVSVAQYFHEKYGVALKYPFLPAIQAGNDAKPVYLPMEVCKIVAGQRYTKKLNERQVTQMLRATCQRPPNRADSIGKMIGKIDHSKDDIVNDFGIVVSSRLCDVGARVLPSPMLKYHDTGKESRVDPRMGQWNMINKKMINGGRVDYWGCVNFSSRLDPGLPSEFCHQLVSMCNSKGMVFNPTPLFPVRNAHANQIDGALRDIHSQSLKSLGPQGKSLQLLIIILPDISGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNALNDAIQRKIPLVSDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQGHRDEIIQDLYREDKDPQKGLVCAGMIRELFIAFRRSTNLKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEEGYQPPITFVVVQKRHHTRLFPISGADTDRSGNILPGTVVDTNICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDSSDSGSTSSGGGNVDIQRLPSIKENVKDVMFYC* | 990 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13093657 | 13101735 | + | CsaV3_4G022010.1 | Csa04g01292 | 526902 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01292 | 989 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 56 | 974 | - | - | |
Csa04g01292 | 989 | MobiDBLite | consensus disorder prediction | 120 | 134 | - | - | |
Csa04g01292 | 989 | Pfam | Piwi domain | 639 | 953 | IPR003165 | GO:0003676 | |
Csa04g01292 | 989 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
Csa04g01292 | 989 | MobiDBLite | consensus disorder prediction | 88 | 107 | - | - | |
Csa04g01292 | 989 | Pfam | N-terminal domain of argonaute | 149 | 286 | IPR032474 | - | |
Csa04g01292 | 989 | MobiDBLite | consensus disorder prediction | 69 | 87 | - | - | |
Csa04g01292 | 989 | PANTHER | PROTEIN ARGONAUTE 1A | 56 | 974 | - | - | |
Csa04g01292 | 989 | CDD | Piwi_ago-like | 506 | 953 | IPR045246 | - | |
Csa04g01292 | 989 | SMART | PAZ_2_a_3 | 357 | 483 | IPR003100 | GO:0005515 | |
Csa04g01292 | 989 | SUPERFAMILY | Ribonuclease H-like | 633 | 955 | IPR012337 | - | |
Csa04g01292 | 989 | Pfam | PAZ domain | 371 | 478 | IPR003100 | GO:0005515 | |
Csa04g01292 | 989 | Pfam | Argonaute linker 2 domain | 488 | 533 | IPR032472 | - | |
Csa04g01292 | 989 | ProSiteProfiles | PAZ domain profile. | 348 | 461 | IPR003100 | GO:0005515 | |
Csa04g01292 | 989 | SMART | DUF1785_2 | 295 | 347 | IPR014811 | - | |
Csa04g01292 | 989 | CDD | PAZ_argonaute_like | 347 | 460 | - | - | |
Csa04g01292 | 989 | SUPERFAMILY | PAZ domain | 344 | 501 | IPR036085 | GO:0005515 | |
Csa04g01292 | 989 | SMART | Piwi_a_2 | 637 | 954 | IPR003165 | GO:0003676 | |
Csa04g01292 | 989 | Pfam | Argonaute linker 1 domain | 297 | 346 | IPR014811 | - | |
Csa04g01292 | 989 | Gene3D | - | 706 | 989 | IPR036397 | GO:0003676 | |
Csa04g01292 | 989 | MobiDBLite | consensus disorder prediction | 120 | 141 | - | - | |
Csa04g01292 | 989 | Gene3D | - | 525 | 700 | - | - | |
Csa04g01292 | 989 | Pfam | Mid domain of argonaute | 544 | 622 | IPR032473 | - | |
Csa04g01292 | 989 | ProSiteProfiles | Piwi domain profile. | 637 | 954 | IPR003165 | GO:0003676 | |
Csa04g01292 | 989 | Gene3D | paz domain | 342 | 465 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01424 | Csa-Chr1:9770482 | Csa04g01292 | Csa-Chr4:13093657 | 0 | dispersed | |
Csa03g01284 | Csa-Chr3:9816222 | Csa04g01292 | Csa-Chr4:13093657 | 0 | dispersed | |
Csa04g01292 | Csa-Chr4:13093657 | Csa06g02394 | Csa-Chr6:21398073 | 2.09E-147 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01292 | K11593 | - | csv:116403556 | 1839.7 |