Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01349 | ATGAGTACCATAATAGAATTCAGAGAGAAGGGGATGTATCAGCAACCCAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTACATCGATAGATTCTCAACCAGCAACTTCTCGTCCTGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGCTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTTGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCAGAATTGCTGCCCTACCTGTCGGCATGAGCTTGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCCCTTGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATACTACAGCAAGCTTAAACACGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCATGTAACTGGTGACATTCCATCCCTTGTCATGCATCTCAAGGATGATCACGAGGTGGATATGCATGATGGATGTTCCTTCAGTCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAACTGCTTTGGACGACAATTCTGTTTGCACTTTGAAGCATTTCGCCTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGTGACGACAGCGAGGCAAAACAGTTCTCATACAGTCTTGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCAAGAAGTATTCGCGACAGCCATCGGAAGGTTCGAGACAGTCATGATGGACTAATTATTCAGAGGAAATTGGCATTATTTTGCTCTGGAAACGAGGGGATGGAACTGAAGTTAAAGGTTACAGGACGAATATGGAGAGTGAGGTGA | 981 | 45.36 | MSTIIEFREKGMYQQPKSREEHASSAASFCKEVTELRLTSIDSQPATSRPEFKGVTFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDSEAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVR* | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13721917 | 13725508 | - | CsaV3_4G023570.1 | Csa04g01349 | 526959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01349 | 326 | SUPERFAMILY | TRAF domain-like | 131 | 322 | - | - | |
Csa04g01349 | 326 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 130 | IPR013083 | - | |
Csa04g01349 | 326 | ProSiteProfiles | Zinc finger RING-type profile. | 78 | 114 | IPR001841 | - | |
Csa04g01349 | 326 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE | 27 | 324 | - | - | |
Csa04g01349 | 326 | ProSiteProfiles | Zinc finger SIAH-type profile. | 131 | 191 | IPR013010 | GO:0008270 | |
Csa04g01349 | 326 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 27 | 324 | - | - | |
Csa04g01349 | 326 | CDD | RING-HC_SIAHs | 76 | 114 | - | - | |
Csa04g01349 | 326 | SUPERFAMILY | RING/U-box | 60 | 118 | - | - | |
Csa04g01349 | 326 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 187 | 319 | IPR008974 | GO:0005515 | |
Csa04g01349 | 326 | Pfam | Seven in absentia protein family | 120 | 319 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Csa04g01349 | 326 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 186 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01349 | Csa-Chr4:13721917 | Csa05g02847 | Csa-Chr5:28844932 | 3.05E-155 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01349 | K04506 | - | csv:101213438 | 691.034 |