Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01349 ATGAGTACCATAATAGAATTCAGAGAGAAGGGGATGTATCAGCAACCCAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTACATCGATAGATTCTCAACCAGCAACTTCTCGTCCTGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGCTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTTGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCAGAATTGCTGCCCTACCTGTCGGCATGAGCTTGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCCCTTGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATACTACAGCAAGCTTAAACACGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCATGTAACTGGTGACATTCCATCCCTTGTCATGCATCTCAAGGATGATCACGAGGTGGATATGCATGATGGATGTTCCTTCAGTCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAACTGCTTTGGACGACAATTCTGTTTGCACTTTGAAGCATTTCGCCTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGTGACGACAGCGAGGCAAAACAGTTCTCATACAGTCTTGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCAAGAAGTATTCGCGACAGCCATCGGAAGGTTCGAGACAGTCATGATGGACTAATTATTCAGAGGAAATTGGCATTATTTTGCTCTGGAAACGAGGGGATGGAACTGAAGTTAAAGGTTACAGGACGAATATGGAGAGTGAGGTGA 981 45.36 MSTIIEFREKGMYQQPKSREEHASSAASFCKEVTELRLTSIDSQPATSRPEFKGVTFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDSEAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVR* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13721917 13725508 - CsaV3_4G023570.1 Csa04g01349 526959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01349 326 SUPERFAMILY TRAF domain-like 131 322 - -
Csa04g01349 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 130 IPR013083 -
Csa04g01349 326 ProSiteProfiles Zinc finger RING-type profile. 78 114 IPR001841 -
Csa04g01349 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 27 324 - -
Csa04g01349 326 ProSiteProfiles Zinc finger SIAH-type profile. 131 191 IPR013010 GO:0008270
Csa04g01349 326 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 27 324 - -
Csa04g01349 326 CDD RING-HC_SIAHs 76 114 - -
Csa04g01349 326 SUPERFAMILY RING/U-box 60 118 - -
Csa04g01349 326 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 187 319 IPR008974 GO:0005515
Csa04g01349 326 Pfam Seven in absentia protein family 120 319 IPR018121 GO:0005737|GO:0006511|GO:0007275
Csa04g01349 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 186 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01349 Csa-Chr4:13721917 Csa05g02847 Csa-Chr5:28844932 3.05E-155 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01349 K04506 - csv:101213438 691.034