Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01354 ATGTTGAATATCAGCCGCCGGCATGCCCCACTCTGCTTTACCGATCTCTATAAAAACAGCTTCCATTGCTTAACATTTTGCTCACTACAAAATTCAAAAATGGCCTCCTCCTCCGCCAACGCTGTCATCTCCTCCTTTTTCTTTCTATCTCTTCTCATCGGCGGCTCTTTCGCTCAACTCTCCGAAACCTTTTACGATCAAACCTGCCCTCGTTTGGCCAACGTTGTGCGCGCCTCCGTCAAGAAAGCCATCGAAAGCGACATCCGTGCGGGTGCTAAACTTATTCGTCTCCATTTCCACGATTGCTTCGTCAATGGATGCGATGGCTCTGTTTTGCTAGAGGATGCTCCCGGCATAGTCAGTGAGCTTAACTCACCTGGAAATCAAGGAATCCAAGGGCTTGAAATTGTCGACGCCATTAAAGCCGACGTCGAAAGAGAATGCCCTGGCATCGTCTCCTGTGCTGACATCCTAGCTCAGGCTTCTAAAGACTCTGTCGATGTGCAAGGAGGGCCTAGCTGGAGAGTGTTATACGGAAGACGAGACAGCAGAATAGCAAACAAAACAGGGGCCGACAGTAACTTGGCTAGTCCCTTCGAAACTCTAGACCAACTTAAAGCTAAATTTAGGAATGTTGGGCTCAATACCATGGATCTCGTCTCTTTATCTGGGGCGCATACATTTGGACGATCGAGATGCAGATTCTTCAGCCACCGATTTGCGAATTTCAACAATACAGGAAGGCCAGACCAATCATTGAACCCAGACTACAGGAGCTTTCTTGAAGGGGTTTGTTCAGCAGGAGCAGACACAAGAGCGAATTTCGATCCAGTAACACCGGATGTGTTTGACAAAAATTACTACACAAATCTTCAAGTGGGGAAGGGGCTTTTGCAGAGCGATCAAGAGCTGTTCTCAACACCTGGAGCTGACACCATCGCCATTGTTAACAGCTTTGCAGAAAGAGAAGGAACATTCTTCAAGGAGTTCAGACAGTCGATGATCAATATGGGAAATATAAAGCCATTGACTGGTGGACAAGGGGAAATTAGAAGAAACTGCAGGAGGGTTAATTCAAACTCTGGTTTGTTGGGTGGAGAAGGAGAAGGATCAGAAGGCCACGATGTTATCCTCCGCCAAATCCCACTCTGTTTTGGTCTCTATAAAAGCAGCATCCACTCCTCAACCTTTTGCTCACTTCCTAATTCAACCATGGCCTCTGCCGTTGCCTCCTTTTTCTTTCTTGCCCTTCTCTTCCGCTCCTCTTTTGCTCAACTCTCCGAAACCTATTACGATCAAACCTGCCCTCGTCTCCCCAACATTGTCCGTGCCTCCGTCAAGAAAGCCATCCAATCCGACATACGTGCCGGTGCTAAACTCATTCGCCTCCATTTCCATGATTGCTTCGTCAATGGATGCGATGGCTCTGTTTTGCTAGAGGATGCTCCTGGCATAGTCAGTGAGCTTAACTCACCTGGAAATCAAGGAATCCAAGGACTTGAAATTGTTGACGCCATTAAAACGGATGTCGAAAAAGAATGCCCCGGCATCGTCTCCTGTGCTGACATCCTAGCTCAAGCTTCCAAGGACTCTGTCGATGTGCAAGGAGGGCCTAGCTGGAGAGTTTTATACGGAAGAAGAGATAGCAGAATCGCTAACAAAACAGGGGCGGATAGTGGGTTAGCCAGTCCCTTCGAAACTCTAGATGAACTCAAAGCCAAATTTGCTGCTGTTGGGCTGGATAGCACTGATCTCGTCGCTTTATCTGGGGCGCATACATTTGGACGATCGAGATGCGTATTCTTCAGCCACCGATTTGCGAATTTCAACGGAACTGGAAGCCCCGACCCATCACTGGATTCGAACTACAGGCAATTCCTTGAAGGGGTTTGTTCAGCAGGAGCAAACACAAGAGCCAATTTCGACCCGGTAACACCAGATGTGTTCGACAAAAATTACTACACGAATCTTCAAGTGGGGAAGGGACTTTTACAGAGCGATCAAGAGCTGTTCTCTACTCCTGGGGCTGACACCATCGCCATTGTCAACAGCTTCGCTGCCAGAGAAGGAACATTCTTCAAGGAGTTCCGGAAGTCAATGATCAATATGGGAAATATTAAACCTTTGACTGGAAAGCGTGGGGAAATTAGAAGAAACTGTAGAAGGGTTAATTCCAACTCTGGATTGTTCGGTGAAGAAGAAGAAGAAGAAGGCCATGATGTCATGTAA 2229 47.38 MLNISRRHAPLCFTDLYKNSFHCLTFCSLQNSKMASSSANAVISSFFFLSLLIGGSFAQLSETFYDQTCPRLANVVRASVKKAIESDIRAGAKLIRLHFHDCFVNGCDGSVLLEDAPGIVSELNSPGNQGIQGLEIVDAIKADVERECPGIVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRIANKTGADSNLASPFETLDQLKAKFRNVGLNTMDLVSLSGAHTFGRSRCRFFSHRFANFNNTGRPDQSLNPDYRSFLEGVCSAGADTRANFDPVTPDVFDKNYYTNLQVGKGLLQSDQELFSTPGADTIAIVNSFAEREGTFFKEFRQSMINMGNIKPLTGGQGEIRRNCRRVNSNSGLLGGEGEGSEGHDVILRQIPLCFGLYKSSIHSSTFCSLPNSTMASAVASFFFLALLFRSSFAQLSETYYDQTCPRLPNIVRASVKKAIQSDIRAGAKLIRLHFHDCFVNGCDGSVLLEDAPGIVSELNSPGNQGIQGLEIVDAIKTDVEKECPGIVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRIANKTGADSGLASPFETLDELKAKFAAVGLDSTDLVALSGAHTFGRSRCVFFSHRFANFNGTGSPDPSLDSNYRQFLEGVCSAGANTRANFDPVTPDVFDKNYYTNLQVGKGLLQSDQELFSTPGADTIAIVNSFAAREGTFFKEFRKSMINMGNIKPLTGKRGEIRRNCRRVNSNSGLFGEEEEEEGHDVM* 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13743414 13747992 - CsaV3_4G023620.1 Csa04g01354 526964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01354 742 Gene3D Peroxidase, domain 2 196 337 - -
Csa04g01354 742 Gene3D Peroxidase, domain 2 562 703 - -
Csa04g01354 742 ProSitePatterns Peroxidases proximal heme-ligand signature. 584 594 IPR019793 -
Csa04g01354 742 ProSiteProfiles Plant heme peroxidase family profile. 425 724 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 ProSiteProfiles Plant heme peroxidase family profile. 59 358 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Haem peroxidase superfamily signature 518 535 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Haem peroxidase superfamily signature 457 471 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Haem peroxidase superfamily signature 642 657 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Haem peroxidase superfamily signature 536 548 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Haem peroxidase superfamily signature 584 599 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 SUPERFAMILY Heme-dependent peroxidases 425 724 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PANTHER PEROXIDASE 72-RELATED 48 358 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 Gene3D - 430 724 - -
Csa04g01354 742 ProSitePatterns Peroxidases active site signature. 91 102 IPR019794 GO:0004601
Csa04g01354 742 SUPERFAMILY Heme-dependent peroxidases 59 358 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 Pfam Peroxidase 76 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 Pfam Peroxidase 442 687 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 Gene3D - 64 358 - -
Csa04g01354 742 PANTHER PEROXIDASE 58 414 724 - -
Csa04g01354 742 ProSitePatterns Peroxidases proximal heme-ligand signature. 218 228 IPR019793 -
Csa04g01354 742 ProSitePatterns Peroxidases active site signature. 457 468 IPR019794 GO:0004601
Csa04g01354 742 PANTHER PEROXIDASE 72-RELATED 414 724 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PANTHER PEROXIDASE 58 48 358 - -
Csa04g01354 742 CDD secretory_peroxidase 59 357 IPR033905 GO:0004601|GO:0042744
Csa04g01354 742 CDD secretory_peroxidase 425 723 IPR033905 GO:0004601|GO:0042744
Csa04g01354 742 PRINTS Plant peroxidase signature 536 551 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Plant peroxidase signature 640 655 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Plant peroxidase signature 517 527 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Plant peroxidase signature 435 454 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Plant peroxidase signature 498 511 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Plant peroxidase signature 656 673 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Plant peroxidase signature 459 479 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Plant peroxidase signature 583 595 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01354 742 PRINTS Plant peroxidase signature 698 711 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01354 Csa-Chr4:13743414 Csa04g01358 Csa-Chr4:13768635 6.39E-148 dispersed
Csa04g01353 Csa-Chr4:13735214 Csa04g01354 Csa-Chr4:13743414 6.35E-135 tandem
Csa04g01354 Csa-Chr4:13743414 Csa04g01355 Csa-Chr4:13754384 7.53E-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01354 K00430 - csv:101217543 662.529