Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01356 ATGTTTGCACAAAGTTTCTTATCCCCAAAGCAAAGACCAGAGAAGACCCCATTTGCAGTATCAAAAATGGGTTTACCTAAAATGGCAGCCATTGTTGTGGTGGTGGCTTTGATGCTATCACCCTCTCAAGCCCAGCTTTCTCCTTTCTTCTACGCCACCACATGCCCTCAGCTGCCTTTCGTTGTTCTCAACGTGGTTGCCCAAGCCCTACAGACTGATGACCGAGCTGCTGCTAAGCTCATTCGCCTCCATTTTCATGATTGCTTTGTCAATGGGTGTGATGGATCGATTCTATTGGTAGACGTACCGGGCGTTATCGATAGTGAACTTAATGGACCTCCAAATGGTGGAATCCAAGGAATGGACATTGTGGACAACATCAAAGCAGCAGTTGAGAGTGCTTGTCCAGGAGTTGTTTCTTGCGCTGATATCTTAGCCATTTCATCTCAAATCTCTGTTTTCTTGTCGGGAGGACCAATTTGGGTTGTACCAATGGGAAGAAAAGACAGCAGAATAGCCAATAGAACTGGAACCTCAAACTTACCTGGTCCCTCAGAAACTCTAGTGGGACTTAAAGGCAAGTTTAAAGATCAAGGGCTTGATTCTACAGATCTCGTGGCTCTATCAGGAGCCCACACGTTTGGAAAATCAAGATGCATGTTCTTCAGTGACCGCCTCATCAACTTCAACGGCACAGGAAGACCCGACACAACGCTTGACCCAATATACAGGGAGCAGCTTCGAAGACTTTGTACTACTCAACAAACACGAGTAAATTTCGACCCAGTCACACCCACTAGATTTGACAAGACCTATTACAACAATTTGATTAGCTTAAGAGGGCTTCTCCAAAGCGACCAAGAGCTCTTCTCAACTCCCAGAGCTGATACCACAGCCATTGTCAGAACTTTTGCTGCCAACGAACGTGCCTTCTTTAAACAATTTGTGAAATCAATGATCAAAATGGGCAACCTCAAGCCTCCCCCTGGCATTGCATCAGAAGTTAGATTGGACTGTAAGAGGGTCAACCCAGTCAGAGCCTACGACGTTATGTAA 1056 45.74 MFAQSFLSPKQRPEKTPFAVSKMGLPKMAAIVVVVALMLSPSQAQLSPFFYATTCPQLPFVVLNVVAQALQTDDRAAAKLIRLHFHDCFVNGCDGSILLVDVPGVIDSELNGPPNGGIQGMDIVDNIKAAVESACPGVVSCADILAISSQISVFLSGGPIWVVPMGRKDSRIANRTGTSNLPGPSETLVGLKGKFKDQGLDSTDLVALSGAHTFGKSRCMFFSDRLINFNGTGRPDTTLDPIYREQLRRLCTTQQTRVNFDPVTPTRFDKTYYNNLISLRGLLQSDQELFSTPRADTTAIVRTFAANERAFFKQFVKSMIKMGNLKPPPGIASEVRLDCKRVNPVRAYDVM* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13758481 13760380 - CsaV3_4G023640.1 Csa04g01356 526966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01356 351 CDD secretory_peroxidase 45 342 IPR033905 GO:0004601|GO:0042744
Csa04g01356 351 Pfam Peroxidase 64 307 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Plant peroxidase signature 55 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Plant peroxidase signature 79 99 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Plant peroxidase signature 119 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Plant peroxidase signature 138 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Plant peroxidase signature 157 172 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Plant peroxidase signature 203 215 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Plant peroxidase signature 259 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Plant peroxidase signature 275 292 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Plant peroxidase signature 317 330 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 ProSitePatterns Peroxidases active site signature. 77 88 IPR019794 GO:0004601
Csa04g01356 351 PANTHER PEROXIDASE 72-RELATED 34 343 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 SUPERFAMILY Heme-dependent peroxidases 45 344 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Haem peroxidase superfamily signature 77 91 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Haem peroxidase superfamily signature 139 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Haem peroxidase superfamily signature 157 169 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Haem peroxidase superfamily signature 204 219 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PRINTS Haem peroxidase superfamily signature 261 276 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 Gene3D Peroxidase, domain 2 182 322 - -
Csa04g01356 351 ProSiteProfiles Plant heme peroxidase family profile. 45 343 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01356 351 PANTHER PEROXIDASE 58 34 343 - -
Csa04g01356 351 ProSitePatterns Peroxidases proximal heme-ligand signature. 204 214 IPR019793 -
Csa04g01356 351 Gene3D - 50 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01356 Csa-Chr4:13758481 Csa04g01358 Csa-Chr4:13768635 2.13E-135 dispersed
Csa04g01355 Csa-Chr4:13754384 Csa04g01356 Csa-Chr4:13758481 6.19E-130 tandem
Csa04g01356 Csa-Chr4:13758481 Csa04g01357 Csa-Chr4:13764077 8.26E-169 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01356 K00430 - csv:101211989 651.744