Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01359 ATGTCGTTCCCTAAAGTTGCAGCTTTAGCAGCCTTGTTGTGTATGATGTTGAGGGGCTCTTTTGCCCAACTCAGCCCTACCTTCTACGACCAGTCTTGCCCTAATCTTACCGCCGTTGTCAGAGATACTGTAAGCCAGGCATTGCAGGGTGATGTTCGAGCCGGAGCCAAGCTTGTTCGCTTTCACTTCCATGATTGTTTTGTCAACGGTTGTGATGGGTCAGTTTTGTTAGAAAATCAAGATGGTGTAGAGAGTGAATTAGATGCACCAGGAAACCAAGGAATACAAGGCTTTGACATTGTCGACAGCATCAAAACTGCAGTTGAAGCTTCTTGTCCAAACACTGTGTCTTGTGCAGATATCTTAGCCATTTCAGCCCGTGAATCTGTTGTCTTGACAGGAGGGTCAGGTTGGGTAGTCCAATTAGGAAGAAGAGATAGCCAAAATGCAAATAGAACTGGAGCTGAAAACAACCTCCCAAGCCCTTTTGAAACACTCGATCAACTTCGAGCAAAATTTAATGCAGCTGGGCTCGATTCTACCGATCTTGTGACTTTATCTGGAGCGCATACATTTGGAAGGTCAAGATGCGTATTCTTCAGTGGGAGGCTAAACAACTTCAATGGCACCGGAAGTCCAGACTCGACTCTTGACCCTACATTTCGGGATGCATTGGTCATCGCTTGTCCGACCGGCGATGGAAACAACCGCATCGCACTGGACGTGGCGACACCGGATGCGTTCGACAATGCATATTACACTGATTTGGTTACCAACCGTGGGCTTCTCCAATCGGATCAAGAGCTGTTCTCAACCGAAGGGGCAGAAACCATCGAGATCGTCAACCGTTTTGCCGGGAACCAATCTGATTTCTTCGCTCAGTTTGGTCAGTCAATGATAAATATGGGGAACATTCAACCGTTAGTGGCACCGGCGGGAGAAATCAGGACCAATTGTAGGCGTGTTAATCCTACTACTACTGCTGCTGGTACTGCTGTTATGTAA 1005 47.26 MSFPKVAALAALLCMMLRGSFAQLSPTFYDQSCPNLTAVVRDTVSQALQGDVRAGAKLVRFHFHDCFVNGCDGSVLLENQDGVESELDAPGNQGIQGFDIVDSIKTAVEASCPNTVSCADILAISARESVVLTGGSGWVVQLGRRDSQNANRTGAENNLPSPFETLDQLRAKFNAAGLDSTDLVTLSGAHTFGRSRCVFFSGRLNNFNGTGSPDSTLDPTFRDALVIACPTGDGNNRIALDVATPDAFDNAYYTDLVTNRGLLQSDQELFSTEGAETIEIVNRFAGNQSDFFAQFGQSMINMGNIQPLVAPAGEIRTNCRRVNPTTTAAGTAVM* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13774922 13776721 - CsaV3_4G023670.1 Csa04g01359 526969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01359 334 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 Pfam Peroxidase 40 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 SUPERFAMILY Heme-dependent peroxidases 23 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 CDD secretory_peroxidase 23 322 IPR033905 GO:0004601|GO:0042744
Csa04g01359 334 Gene3D - 28 323 - -
Csa04g01359 334 PANTHER PEROXIDASE 58 13 323 - -
Csa04g01359 334 ProSiteProfiles Plant heme peroxidase family profile. 23 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 Gene3D Peroxidase, domain 2 160 302 - -
Csa04g01359 334 PANTHER PEROXIDASE 72-RELATED 13 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01359 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01355 Csa-Chr4:13754384 Csa04g01359 Csa-Chr4:13774922 4.00E-138 dispersed
Csa04g01357 Csa-Chr4:13764077 Csa04g01359 Csa-Chr4:13774922 1.54E-138 dispersed
Csa04g01359 Csa-Chr4:13774922 Csa05g00500 Csa-Chr5:3226466 8.39E-144 dispersed
Csa04g01358 Csa-Chr4:13768635 Csa04g01359 Csa-Chr4:13774922 4.27E-142 tandem
Csa04g01359 Csa-Chr4:13774922 Csa04g01360 Csa-Chr4:13778724 4.99E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01359 K00430 - csv:101217743 665.996