Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01360 ATGGAAATTATCTCAACCAGCAGAATGAAGAGAAGTTTTTCTTTGGTTATGATCATGATAATTTTTTTCATGATTTGTGGTTCCACTAGTTCTCAATTAACTGTAGATTTCTACAGAAGATCGTGTCCAAATGTTCTCAGAATCGTGAGGAGAGAAGTCATCAATGCTCTCAAGAACGATATGCGAATGGCTGCTTCCCTTCTTCGCCTCCATTTTCACGACTGCTTTGTTAGCGGTTGCGACGCGTCTGTGCTGTTGGATGGGAGTGATGGGGAGCAAAATGCACTTCCCAACATCAATTCTCTGAGAGGGCTTGAAGTTATGGATAACATCAAAGCAGTAGTGGAGAATTCATGTCCGGGAGTTGTATCTTGTGCTGATATATTAACCATAGCTGCCAGAGATTCTGTTCTCTTGAGCGGAGGACCGGCATGGAAAGTATTATTGGGGAGAAGAGATGGATTGGTAGCGAATAGAACAGGAGCCGAGGAACTTCCTTCTCCATTTGAAAGCCTTGATGGTATCATCAAGAAATTCATTCAAGTTGGGCTCAATGTGACTGACGTCGCGGCTTTATCTGGAGCTCATACATTTGGATTTGCAAGATGTGCGATGTTCAACAATAGGCTGTTCAACTTCTCAGGAAGTGATTCTCCAGACCCAACCATGGAGTCCATGATGGTATCTGATCTTCAAGCTCTCTGCCCTCTCACCGATGACGGCAACAAGACCACTGTTCTCGACCGAAACTCAACCGATTTATTTGACAACCATTACTACAAGAACTTGCTGAACCAAAAGGGGCTGTTGGCGTCCGACCAGATCCTGTTCTCAAGCGATGAAGCTCAAACCACTACAAAACCGTTGGTCGAAGCTTATAGCTCAAACACTACGCTTTTCTTCAGCGACTTTGTTAAAGCCATGATCAAGATGGGGAATATGAGCCCACTCACTGGCTCCAATGGACAGATTCGAAACAACTGCGGAATCGTTAATTCCTCTTAG 1005 44.28 MEIISTSRMKRSFSLVMIMIIFFMICGSTSSQLTVDFYRRSCPNVLRIVRREVINALKNDMRMAASLLRLHFHDCFVSGCDASVLLDGSDGEQNALPNINSLRGLEVMDNIKAVVENSCPGVVSCADILTIAARDSVLLSGGPAWKVLLGRRDGLVANRTGAEELPSPFESLDGIIKKFIQVGLNVTDVAALSGAHTFGFARCAMFNNRLFNFSGSDSPDPTMESMMVSDLQALCPLTDDGNKTTVLDRNSTDLFDNHYYKNLLNQKGLLASDQILFSSDEAQTTTKPLVEAYSSNTTLFFSDFVKAMIKMGNMSPLTGSNGQIRNNCGIVNSS* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13778724 13780954 - CsaV3_4G023680.1 Csa04g01360 526970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01360 334 CDD secretory_peroxidase 32 331 IPR033905 GO:0004601|GO:0042744
Csa04g01360 334 Gene3D Peroxidase, domain 2 166 314 - -
Csa04g01360 334 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PRINTS Plant peroxidase signature 306 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 Gene3D - 38 332 - -
Csa04g01360 334 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PANTHER PEROXIDASE 72-RELATED 14 331 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Csa04g01360 334 SUPERFAMILY Heme-dependent peroxidases 32 332 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 Pfam Peroxidase 49 295 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 PANTHER PEROXIDASE 59 14 331 - -
Csa04g01360 334 ProSiteProfiles Plant heme peroxidase family profile. 32 332 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa04g01360 334 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01200 Csa-Chr2:11798159 Csa04g01360 Csa-Chr4:13778724 2.81E-100 dispersed
Csa04g01360 Csa-Chr4:13778724 Csa06g02923 Csa-Chr6:25335342 5.35E-123 dispersed
Csa05g00500 Csa-Chr5:3226466 Csa04g01360 Csa-Chr4:13778724 4.88E-96 dispersed
Csa04g01359 Csa-Chr4:13774922 Csa04g01360 Csa-Chr4:13778724 4.99E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01360 K00430 - csv:101211257 661.373