Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01403 ATGGATTCGTCTCATCCATCGTCGTCTCCACCGGAGCTTGATCTTCACACTCTCAGACCCATCAAGGTACTTGGAAAGGGAGCCATGGGGACTGTATTTCTCGTCCATGATCGAATTTCTGATGAGTCTGCTCATTTCCCCTTTGCTCTTAAGGTCGTTGAGAAATCCTCTTTTGCTTCCAAAGTCGACGCCGAGCGGCGAGCTCGTTGGGAGATTCAGGTTCTTTCTCGTTTGTCTTTCCCTAAACCACCTCACCCTTTTCTTCCCGACATTGTTGGTTCTTTTGAATCCGATGAGTTTTTGGGTTGGGCTGTTCCGTACTGTCCCGGGGGCGATCTTAACGTCTTGCGTTACCGTCAATTGGACCGGGTTTTCTCTCCAGCTGTCATTCGTTTTTATTTGGCGGAGATCGTTTGTGCGCTCGACCACCTTCATAGTATGGGTATCGTCTACCGAGATTTGAAGCCGGAGAATGTGTTGATTCAACAATCGGGTCACGTCACTCTCACCGACTTTGATCTGTCGCGTACTTTAACACGTAGAACAGTAAAAGACGTTGTCTCTCTTGAAAACACCGGTCACGAGAAGCCACCGATCGCCGTCAGACGAAAACCGGGGAGAAACTTGACACGGTGGATCATGGCGACATCCAACGTTAAAAACGGCTTAAAAAAGGCTAAATCCGCTCGGGTTAGTCCGGTGAGTCGTCGGAAGTCGAGTTTCACCAATGGCGAACGGTCGAATTCATTCGTCGGAACGGAGGAGTATGTCTCACCGGAAGTTGTTAAAGGAGACGGACATGAATTCGCCGTAGATTGGTGGGCTCTAGGGATCCTCACGTACGAGATGCTCTACGGGACAACGCCGTTCAAGGGGAAGAACCGGAAAGAGACGTTTCGAAACGTTTTGGTCAAAGCTCCGGAGTTGATCGGAAAGCGATCGGATTTAACGGATTTGATCGAAAGGTTGCTTGTGAAGGACCCCACAAAGCGGTTGGGGTACGCAGGAGGCGCGTGCGAGATCAAAGAGCATGCGTTTTTTAACGGTGTTAAGTGGGACCTGTTAACGGAAGTAACGCGACCGCCATTTTTACCTCAACGTGAAGAAACGGAATGGACGGGGAATGTACAGCTGGGTTGTGTGAGTATAACGGAATACTTTCATAAAGAGAGATCACCGCCTTCGTTTCCAGCGTCGCCGTCGTCAACAACACCGTCGACGTCATTCAGTTGGGAGAATAATAAGATGTCATTGACAGAGTTCTAA 1266 49.37 MDSSHPSSSPPELDLHTLRPIKVLGKGAMGTVFLVHDRISDESAHFPFALKVVEKSSFASKVDAERRARWEIQVLSRLSFPKPPHPFLPDIVGSFESDEFLGWAVPYCPGGDLNVLRYRQLDRVFSPAVIRFYLAEIVCALDHLHSMGIVYRDLKPENVLIQQSGHVTLTDFDLSRTLTRRTVKDVVSLENTGHEKPPIAVRRKPGRNLTRWIMATSNVKNGLKKAKSARVSPVSRRKSSFTNGERSNSFVGTEEYVSPEVVKGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTKRLGYAGGACEIKEHAFFNGVKWDLLTEVTRPPFLPQREETEWTGNVQLGCVSITEYFHKERSPPSFPASPSSTTPSTSFSWENNKMSLTEF* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14058083 14060268 - CsaV3_4G024110.1 Csa04g01403 527013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01403 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Csa04g01403 421 Gene3D Transferase(Phosphotransferase) domain 1 112 181 - -
Csa04g01403 421 Gene3D Transferase(Phosphotransferase) domain 1 243 366 - -
Csa04g01403 421 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Csa04g01403 421 ProSiteProfiles Protein kinase domain profile. 18 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01403 421 Gene3D Phosphorylase Kinase; domain 1 19 111 - -
Csa04g01403 421 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 13 393 - -
Csa04g01403 421 PANTHER FLIPPASE KINASE 1-RELATED 13 393 - -
Csa04g01403 421 Pfam Protein kinase domain 241 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01403 421 Pfam Protein kinase domain 21 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01403 421 SUPERFAMILY Protein kinase-like (PK-like) 19 410 IPR011009 -
Csa04g01403 421 SMART serkin_6 18 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01403 Csa-Chr4:14058083 Csa07g01557 Csa-Chr7:15913650 5.79E-90 dispersed
Csa04g01403 Csa-Chr4:14058083 Csa01g01551 Csa-Chr1:11109475 1.08E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78156 PF00069 Pkinase 1.60E-29 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01403 - K08286 csv:101207338 834.328