Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01403 | ATGGATTCGTCTCATCCATCGTCGTCTCCACCGGAGCTTGATCTTCACACTCTCAGACCCATCAAGGTACTTGGAAAGGGAGCCATGGGGACTGTATTTCTCGTCCATGATCGAATTTCTGATGAGTCTGCTCATTTCCCCTTTGCTCTTAAGGTCGTTGAGAAATCCTCTTTTGCTTCCAAAGTCGACGCCGAGCGGCGAGCTCGTTGGGAGATTCAGGTTCTTTCTCGTTTGTCTTTCCCTAAACCACCTCACCCTTTTCTTCCCGACATTGTTGGTTCTTTTGAATCCGATGAGTTTTTGGGTTGGGCTGTTCCGTACTGTCCCGGGGGCGATCTTAACGTCTTGCGTTACCGTCAATTGGACCGGGTTTTCTCTCCAGCTGTCATTCGTTTTTATTTGGCGGAGATCGTTTGTGCGCTCGACCACCTTCATAGTATGGGTATCGTCTACCGAGATTTGAAGCCGGAGAATGTGTTGATTCAACAATCGGGTCACGTCACTCTCACCGACTTTGATCTGTCGCGTACTTTAACACGTAGAACAGTAAAAGACGTTGTCTCTCTTGAAAACACCGGTCACGAGAAGCCACCGATCGCCGTCAGACGAAAACCGGGGAGAAACTTGACACGGTGGATCATGGCGACATCCAACGTTAAAAACGGCTTAAAAAAGGCTAAATCCGCTCGGGTTAGTCCGGTGAGTCGTCGGAAGTCGAGTTTCACCAATGGCGAACGGTCGAATTCATTCGTCGGAACGGAGGAGTATGTCTCACCGGAAGTTGTTAAAGGAGACGGACATGAATTCGCCGTAGATTGGTGGGCTCTAGGGATCCTCACGTACGAGATGCTCTACGGGACAACGCCGTTCAAGGGGAAGAACCGGAAAGAGACGTTTCGAAACGTTTTGGTCAAAGCTCCGGAGTTGATCGGAAAGCGATCGGATTTAACGGATTTGATCGAAAGGTTGCTTGTGAAGGACCCCACAAAGCGGTTGGGGTACGCAGGAGGCGCGTGCGAGATCAAAGAGCATGCGTTTTTTAACGGTGTTAAGTGGGACCTGTTAACGGAAGTAACGCGACCGCCATTTTTACCTCAACGTGAAGAAACGGAATGGACGGGGAATGTACAGCTGGGTTGTGTGAGTATAACGGAATACTTTCATAAAGAGAGATCACCGCCTTCGTTTCCAGCGTCGCCGTCGTCAACAACACCGTCGACGTCATTCAGTTGGGAGAATAATAAGATGTCATTGACAGAGTTCTAA | 1266 | 49.37 | MDSSHPSSSPPELDLHTLRPIKVLGKGAMGTVFLVHDRISDESAHFPFALKVVEKSSFASKVDAERRARWEIQVLSRLSFPKPPHPFLPDIVGSFESDEFLGWAVPYCPGGDLNVLRYRQLDRVFSPAVIRFYLAEIVCALDHLHSMGIVYRDLKPENVLIQQSGHVTLTDFDLSRTLTRRTVKDVVSLENTGHEKPPIAVRRKPGRNLTRWIMATSNVKNGLKKAKSARVSPVSRRKSSFTNGERSNSFVGTEEYVSPEVVKGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTKRLGYAGGACEIKEHAFFNGVKWDLLTEVTRPPFLPQREETEWTGNVQLGCVSITEYFHKERSPPSFPASPSSTTPSTSFSWENNKMSLTEF* | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 14058083 | 14060268 | - | CsaV3_4G024110.1 | Csa04g01403 | 527013 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01403 | 421 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 149 | 161 | IPR008271 | GO:0004672|GO:0006468 | |
Csa04g01403 | 421 | Gene3D | Transferase(Phosphotransferase) domain 1 | 112 | 181 | - | - | |
Csa04g01403 | 421 | Gene3D | Transferase(Phosphotransferase) domain 1 | 243 | 366 | - | - | |
Csa04g01403 | 421 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 51 | IPR017441 | GO:0005524 | |
Csa04g01403 | 421 | ProSiteProfiles | Protein kinase domain profile. | 18 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g01403 | 421 | Gene3D | Phosphorylase Kinase; domain 1 | 19 | 111 | - | - | |
Csa04g01403 | 421 | PANTHER | SERINE/THREONINE-PROTEIN KINASE UCNL | 13 | 393 | - | - | |
Csa04g01403 | 421 | PANTHER | FLIPPASE KINASE 1-RELATED | 13 | 393 | - | - | |
Csa04g01403 | 421 | Pfam | Protein kinase domain | 241 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g01403 | 421 | Pfam | Protein kinase domain | 21 | 185 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g01403 | 421 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 410 | IPR011009 | - | |
Csa04g01403 | 421 | SMART | serkin_6 | 18 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01403 | Csa-Chr4:14058083 | Csa07g01557 | Csa-Chr7:15913650 | 5.79E-90 | dispersed | |
Csa04g01403 | Csa-Chr4:14058083 | Csa01g01551 | Csa-Chr1:11109475 | 1.08E-74 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78156 | PF00069 | Pkinase | 1.60E-29 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01403 | - | K08286 | csv:101207338 | 834.328 |