Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01404 | ATGGGATCCATGAACTCAAACAATTGGCTTTCATTTCCACTTTCACCCACCAATCCTTCTTTGCCACCACATCTTCAAACCACAACTCATCATTCCCATCATTTCTCTTTGGGAAATTTGGAGAATGATCATAATATGGATATTCCATTTCAAACCCATGAGTGGAATCTGATAAGTAATCAAAGTGGTGGTGAAGTTCCAAAAATAGCAGATTTTTTAGGAGTAAGCAAAGCAGAAAATGAAACAGATCTCATTGGGTTTAATGAAATTCATCATCAAAGTAATGATACAGATTATTTGTTCCCAATCACAAGATTAGTTCCTCTTCATCAACAACAACAACAACAACAACAACAAACACTCACTCCTCCTCCTCCTCCTTCTAATATAAATCTTGACTCTTCTTCTTCTTCTAACTTTGACCTTCAAGATAATTCCAACTGTTTACAATCTTTGACTCTCTCGATGGGTAGTGGTAAACCCTCTACTTGTGAAACAACGTCCACCCCTGATAATAATACCACATCCAACAACAGTAACAACAACAGCAATACCACTCTCGACGTCACCCCTCGAAGAACTTTGGACACTTTTGGTCAAAGAACTTCCATTTATCGTGGTGTAACCAGGCATAGATGGACCGGAAGGTATGAAGCGCATTTGTGGGATAACAGTTGTAGAAGGGAAGGGCAGTCAAGGAAGGGCAGGCAAGTCTATTTGGGTGGGTATGATAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCTGCATTGAAATACTGGGGAACATCCACCACCACAAATTTTCCTATCAGTAACTATGAGAAGGAAGTGGAGGAAATGAAGCACATGACCAGACAAGAATTTGTGGCTGCCATTAGAAGGAAAAGCAGTGGATTCTCAAGGGGGGCATCAATGTATCGTGGAGTTACAAGGCACCACCAACATGGAAGATGGCAGGCTAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACGGAAGAGGAAGCAGCAGAAGCATATGATATAGCGGCTATAAAATTCAGAGGGCTAAATGCAGTAACAAACTTCGATATGAGTCGTTACGATGTGAAAAGCATATTAGAGAGCAACACGCTTCCAATCGGTGGTGGTGCTGCAAAGCGACTAAAGGAAGCTCAAGCCGTGGAATCGTCTCGAAAGCGAGATGAAATGATTGCATTAGGTTCCTCTTCATCCTCCTCTTCTTGCTTCCAATATGGAACCTCTTCCTCTTCCACAACTAACTCTTCTCATTATCCTAATTTACTCCAACAACCAAATCTCAATATAGACCATCACCATCTTCAAACCCAACCTTTGCTCTCTCTTCAAAACCACCATGACATTTCTCATTACAGTACTCACCATCCTTCCTCGTTCCACAACCCTTCTTCTTCTTACATCCACCATTCATCTGATCATTCCTCTTACCCTAACAACAACAACAATCATCCGTTTTACGGTGCTGGGTATCTTCATAATCATCCCGCTTTGCTTCACGGCATGATTAACATGAGCGGCGGAGGTGGTGGCGCCGGCGCCGGCGGAGGAGGAGGAGGTGGAGGAGCTTCTAGTTTGGACACTAATAATAATACTAATGCATTGAGTCATTTTGAGAGTAATAGTCATGGAGGGGGAGGTTATCTTGGGAATGCATTTGGGATTGGTTCTGCATCCGGCAGCACAGCGGAGGAATATGCCCTCGTTAAGGTTGACTATGACATGCCTAATTCCGGTGGCTACGGCGGTTGGACCGGGGATTCTGTCCAAGGTTCTAACGCTGGGGTTTTCTCCATGTGGAATGATTGA | 1848 | 43.13 | MGSMNSNNWLSFPLSPTNPSLPPHLQTTTHHSHHFSLGNLENDHNMDIPFQTHEWNLISNQSGGEVPKIADFLGVSKAENETDLIGFNEIHHQSNDTDYLFPITRLVPLHQQQQQQQQQTLTPPPPPSNINLDSSSSSNFDLQDNSNCLQSLTLSMGSGKPSTCETTSTPDNNTTSNNSNNNSNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAVESSRKRDEMIALGSSSSSSSCFQYGTSSSSTTNSSHYPNLLQQPNLNIDHHHLQTQPLLSLQNHHDISHYSTHHPSSFHNPSSSYIHHSSDHSSYPNNNNNHPFYGAGYLHNHPALLHGMINMSGGGGGAGAGGGGGGGGASSLDTNNNTNALSHFESNSHGGGGYLGNAFGIGSASGSTAEEYALVKVDYDMPNSGGYGGWTGDSVQGSNAGVFSMWND* | 616 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 14070320 | 14073714 | - | CsaV3_4G024120.1 | Csa04g01404 | 527014 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01404 | 615 | SMART | rav1_2 | 204 | 276 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01404 | 615 | SMART | rav1_2 | 306 | 370 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01404 | 615 | MobiDBLite | consensus disorder prediction | 394 | 432 | - | - | |
Csa04g01404 | 615 | SUPERFAMILY | DNA-binding domain | 305 | 366 | IPR016177 | GO:0003677 | |
Csa04g01404 | 615 | MobiDBLite | consensus disorder prediction | 536 | 551 | - | - | |
Csa04g01404 | 615 | SUPERFAMILY | DNA-binding domain | 203 | 272 | IPR016177 | GO:0003677 | |
Csa04g01404 | 615 | CDD | AP2 | 305 | 366 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01404 | 615 | Pfam | AP2 domain | 307 | 356 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01404 | 615 | Pfam | AP2 domain | 204 | 262 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01404 | 615 | MobiDBLite | consensus disorder prediction | 468 | 493 | - | - | |
Csa04g01404 | 615 | PRINTS | Ethylene responsive element binding protein signature | 205 | 216 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01404 | 615 | PRINTS | Ethylene responsive element binding protein signature | 346 | 366 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01404 | 615 | Gene3D | AP2/ERF domain | 306 | 366 | IPR036955 | GO:0003700|GO:0006355 | |
Csa04g01404 | 615 | Gene3D | AP2/ERF domain | 204 | 272 | IPR036955 | GO:0003700|GO:0006355 | |
Csa04g01404 | 615 | MobiDBLite | consensus disorder prediction | 463 | 493 | - | - | |
Csa04g01404 | 615 | CDD | AP2 | 203 | 272 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01404 | 615 | ProSiteProfiles | AP2/ERF domain profile. | 204 | 270 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01404 | 615 | MobiDBLite | consensus disorder prediction | 404 | 432 | - | - | |
Csa04g01404 | 615 | MobiDBLite | consensus disorder prediction | 110 | 190 | - | - | |
Csa04g01404 | 615 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 8 | 614 | - | - | |
Csa04g01404 | 615 | MobiDBLite | consensus disorder prediction | 131 | 190 | - | - | |
Csa04g01404 | 615 | MobiDBLite | consensus disorder prediction | 526 | 551 | - | - | |
Csa04g01404 | 615 | ProSiteProfiles | AP2/ERF domain profile. | 306 | 364 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01404 | 615 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 | 8 | 614 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00816 | Csa-Chr2:7285623 | Csa04g01404 | Csa-Chr4:14070320 | 1.97E-132 | dispersed | |
Csa03g00690 | Csa-Chr3:6134843 | Csa04g01404 | Csa-Chr4:14070320 | 1.20E-122 | dispersed | |
Csa04g01404 | Csa-Chr4:14070320 | Csa06g03048 | Csa-Chr6:26200005 | 6.59E-119 | dispersed | |
Csa04g01404 | Csa-Chr4:14070320 | Csa04g02504 | Csa-Chr4:24869562 | 2.32E-120 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31555 | PF00847 | AP2 | 1.10E-12 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01404 | K09285 | - | csv:101207097 | 1110.13 |