Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01404 ATGGGATCCATGAACTCAAACAATTGGCTTTCATTTCCACTTTCACCCACCAATCCTTCTTTGCCACCACATCTTCAAACCACAACTCATCATTCCCATCATTTCTCTTTGGGAAATTTGGAGAATGATCATAATATGGATATTCCATTTCAAACCCATGAGTGGAATCTGATAAGTAATCAAAGTGGTGGTGAAGTTCCAAAAATAGCAGATTTTTTAGGAGTAAGCAAAGCAGAAAATGAAACAGATCTCATTGGGTTTAATGAAATTCATCATCAAAGTAATGATACAGATTATTTGTTCCCAATCACAAGATTAGTTCCTCTTCATCAACAACAACAACAACAACAACAACAAACACTCACTCCTCCTCCTCCTCCTTCTAATATAAATCTTGACTCTTCTTCTTCTTCTAACTTTGACCTTCAAGATAATTCCAACTGTTTACAATCTTTGACTCTCTCGATGGGTAGTGGTAAACCCTCTACTTGTGAAACAACGTCCACCCCTGATAATAATACCACATCCAACAACAGTAACAACAACAGCAATACCACTCTCGACGTCACCCCTCGAAGAACTTTGGACACTTTTGGTCAAAGAACTTCCATTTATCGTGGTGTAACCAGGCATAGATGGACCGGAAGGTATGAAGCGCATTTGTGGGATAACAGTTGTAGAAGGGAAGGGCAGTCAAGGAAGGGCAGGCAAGTCTATTTGGGTGGGTATGATAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCTGCATTGAAATACTGGGGAACATCCACCACCACAAATTTTCCTATCAGTAACTATGAGAAGGAAGTGGAGGAAATGAAGCACATGACCAGACAAGAATTTGTGGCTGCCATTAGAAGGAAAAGCAGTGGATTCTCAAGGGGGGCATCAATGTATCGTGGAGTTACAAGGCACCACCAACATGGAAGATGGCAGGCTAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACGGAAGAGGAAGCAGCAGAAGCATATGATATAGCGGCTATAAAATTCAGAGGGCTAAATGCAGTAACAAACTTCGATATGAGTCGTTACGATGTGAAAAGCATATTAGAGAGCAACACGCTTCCAATCGGTGGTGGTGCTGCAAAGCGACTAAAGGAAGCTCAAGCCGTGGAATCGTCTCGAAAGCGAGATGAAATGATTGCATTAGGTTCCTCTTCATCCTCCTCTTCTTGCTTCCAATATGGAACCTCTTCCTCTTCCACAACTAACTCTTCTCATTATCCTAATTTACTCCAACAACCAAATCTCAATATAGACCATCACCATCTTCAAACCCAACCTTTGCTCTCTCTTCAAAACCACCATGACATTTCTCATTACAGTACTCACCATCCTTCCTCGTTCCACAACCCTTCTTCTTCTTACATCCACCATTCATCTGATCATTCCTCTTACCCTAACAACAACAACAATCATCCGTTTTACGGTGCTGGGTATCTTCATAATCATCCCGCTTTGCTTCACGGCATGATTAACATGAGCGGCGGAGGTGGTGGCGCCGGCGCCGGCGGAGGAGGAGGAGGTGGAGGAGCTTCTAGTTTGGACACTAATAATAATACTAATGCATTGAGTCATTTTGAGAGTAATAGTCATGGAGGGGGAGGTTATCTTGGGAATGCATTTGGGATTGGTTCTGCATCCGGCAGCACAGCGGAGGAATATGCCCTCGTTAAGGTTGACTATGACATGCCTAATTCCGGTGGCTACGGCGGTTGGACCGGGGATTCTGTCCAAGGTTCTAACGCTGGGGTTTTCTCCATGTGGAATGATTGA 1848 43.13 MGSMNSNNWLSFPLSPTNPSLPPHLQTTTHHSHHFSLGNLENDHNMDIPFQTHEWNLISNQSGGEVPKIADFLGVSKAENETDLIGFNEIHHQSNDTDYLFPITRLVPLHQQQQQQQQQTLTPPPPPSNINLDSSSSSNFDLQDNSNCLQSLTLSMGSGKPSTCETTSTPDNNTTSNNSNNNSNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAVESSRKRDEMIALGSSSSSSSCFQYGTSSSSTTNSSHYPNLLQQPNLNIDHHHLQTQPLLSLQNHHDISHYSTHHPSSFHNPSSSYIHHSSDHSSYPNNNNNHPFYGAGYLHNHPALLHGMINMSGGGGGAGAGGGGGGGGASSLDTNNNTNALSHFESNSHGGGGYLGNAFGIGSASGSTAEEYALVKVDYDMPNSGGYGGWTGDSVQGSNAGVFSMWND* 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14070320 14073714 - CsaV3_4G024120.1 Csa04g01404 527014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01404 615 SMART rav1_2 204 276 IPR001471 GO:0003700|GO:0006355
Csa04g01404 615 SMART rav1_2 306 370 IPR001471 GO:0003700|GO:0006355
Csa04g01404 615 MobiDBLite consensus disorder prediction 394 432 - -
Csa04g01404 615 SUPERFAMILY DNA-binding domain 305 366 IPR016177 GO:0003677
Csa04g01404 615 MobiDBLite consensus disorder prediction 536 551 - -
Csa04g01404 615 SUPERFAMILY DNA-binding domain 203 272 IPR016177 GO:0003677
Csa04g01404 615 CDD AP2 305 366 IPR001471 GO:0003700|GO:0006355
Csa04g01404 615 Pfam AP2 domain 307 356 IPR001471 GO:0003700|GO:0006355
Csa04g01404 615 Pfam AP2 domain 204 262 IPR001471 GO:0003700|GO:0006355
Csa04g01404 615 MobiDBLite consensus disorder prediction 468 493 - -
Csa04g01404 615 PRINTS Ethylene responsive element binding protein signature 205 216 IPR001471 GO:0003700|GO:0006355
Csa04g01404 615 PRINTS Ethylene responsive element binding protein signature 346 366 IPR001471 GO:0003700|GO:0006355
Csa04g01404 615 Gene3D AP2/ERF domain 306 366 IPR036955 GO:0003700|GO:0006355
Csa04g01404 615 Gene3D AP2/ERF domain 204 272 IPR036955 GO:0003700|GO:0006355
Csa04g01404 615 MobiDBLite consensus disorder prediction 463 493 - -
Csa04g01404 615 CDD AP2 203 272 IPR001471 GO:0003700|GO:0006355
Csa04g01404 615 ProSiteProfiles AP2/ERF domain profile. 204 270 IPR001471 GO:0003700|GO:0006355
Csa04g01404 615 MobiDBLite consensus disorder prediction 404 432 - -
Csa04g01404 615 MobiDBLite consensus disorder prediction 110 190 - -
Csa04g01404 615 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 614 - -
Csa04g01404 615 MobiDBLite consensus disorder prediction 131 190 - -
Csa04g01404 615 MobiDBLite consensus disorder prediction 526 551 - -
Csa04g01404 615 ProSiteProfiles AP2/ERF domain profile. 306 364 IPR001471 GO:0003700|GO:0006355
Csa04g01404 615 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 614 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00816 Csa-Chr2:7285623 Csa04g01404 Csa-Chr4:14070320 1.97E-132 dispersed
Csa03g00690 Csa-Chr3:6134843 Csa04g01404 Csa-Chr4:14070320 1.20E-122 dispersed
Csa04g01404 Csa-Chr4:14070320 Csa06g03048 Csa-Chr6:26200005 6.59E-119 dispersed
Csa04g01404 Csa-Chr4:14070320 Csa04g02504 Csa-Chr4:24869562 2.32E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31555 PF00847 AP2 1.10E-12 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01404 K09285 - csv:101207097 1110.13