Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01407 | ATGGGTGATCTTAATTTCTCCATCAATAATAATAACAATAATACTTGTTTTAGTTTATCCCCTTTTCAACATTACTCTTCTTCTTCTTCTTCTTCTTCTTATAACTCTCATTATCATCATGATCATCTCTTCTCACTTTCTTACTCCAATGATAACAACAGCAATACCCTAAAAAACATGACTACTTCTCATTATAATCCTTCTTCTTCTTCTTCTTCTTCTTCTCAAGTTCTTCTTCCTCTTTTGAGTTTAAGCCCTGCAAGAGTTGAACAAGATCATCATCATCCTCATAATAATATTATTGATCATGATCATAATGTTATTGATTATGATCAAAGTGATGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTTCTTCTTCTTCTAATAACTCTGATTTGATTTTGAGGCTTTCTTCAACTGAGATCTCAGATCAAGAAGATCACACCCATCAATTGCAAGAACTTTCATCTAATAATTCTATTACTAGTAATAGTAATGGAGTTAATAAGGGTCAATATTGGATTCCAACTCCTACTCAGATTCTCATTGGTCCAACTCAATTCTCTTGCCCTCTTTGTTTCAAGACTTTCAATAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGGAAAGGGCCACAATCACTAAGAGGAACACAACCAACAGCAATGTTGAGGCTGCCATGTTACTGTTGTGCAATAGGATGCAGAAACAACATAGACCATCCAAGATCAAAGCCATTAAAAGACTTTAGAACACTTCAGACACATTACAAAAGAAAACATGGGATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTTAAAGGAGATTGGAGAACACATGAGAAGAATTGTGGGAAACTTTGGCATTGCACATGTGGCTCTGATTTTAAGCATAAAAGGTCTCTTAAAGATCATATCAAAGCCTTTGGACTTGGCCATGCTGCTTATGGGATTGATGATCATCATAATCATCATCATTCTTTTGATAATGAAGATGATGACCCAGCTTCTGATATTGAAACATGA | 1062 | 35.31 | MGDLNFSINNNNNNTCFSLSPFQHYSSSSSSSSYNSHYHHDHLFSLSYSNDNNSNTLKNMTTSHYNPSSSSSSSSQVLLPLLSLSPARVEQDHHHPHNNIIDHDHNVIDYDQSDVTVALHLGLPTPSSSSNNSDLILRLSSTEISDQEDHTHQLQELSSNNSITSNSNGVNKGQYWIPTPTQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAIGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVKGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGLGHAAYGIDDHHNHHHSFDNEDDDPASDIET* | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 14099785 | 14102965 | - | CsaV3_4G024150.1 | Csa04g01407 | 527017 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01407 | 353 | SMART | c2h2final6 | 190 | 212 | IPR013087 | - | |
Csa04g01407 | 353 | SMART | c2h2final6 | 237 | 269 | IPR013087 | - | |
Csa04g01407 | 353 | SMART | c2h2final6 | 274 | 294 | IPR013087 | - | |
Csa04g01407 | 353 | PANTHER | TESTA 1 PROTEIN, PUTATIVE-RELATED | 11 | 352 | - | - | |
Csa04g01407 | 353 | SUPERFAMILY | beta-beta-alpha zinc fingers | 255 | 294 | IPR036236 | - | |
Csa04g01407 | 353 | Gene3D | Classic Zinc Finger | 189 | 212 | - | - | |
Csa04g01407 | 353 | Gene3D | Classic Zinc Finger | 250 | 327 | - | - | |
Csa04g01407 | 353 | MobiDBLite | consensus disorder prediction | 146 | 165 | - | - | |
Csa04g01407 | 353 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 190 | 217 | IPR013087 | - | |
Csa04g01407 | 353 | PANTHER | ZINC FINGER PROTEIN WIP2 | 11 | 352 | IPR043584 | GO:0003700|GO:0010468 | |
Csa04g01407 | 353 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 192 | 212 | IPR013087 | - | |
Csa04g01407 | 353 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 274 | 301 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03608 | Csa-Chr3:32155979 | Csa04g01407 | Csa-Chr4:14099785 | 5.74E-120 | dispersed | |
Csa04g01407 | Csa-Chr4:14099785 | Csa04g02111 | Csa-Chr4:21785444 | 3.41E-125 | dispersed | |
Csa01g01464 | Csa-Chr1:10319081 | Csa04g01407 | Csa-Chr4:14099785 | 1.37E-101 | transposed | |
Csa05g01484 | Csa-Chr5:17144798 | Csa04g01407 | Csa-Chr4:14099785 | 4.89E-99 | transposed | |
Csa03g03266 | Csa-Chr3:29869314 | Csa04g01407 | Csa-Chr4:14099785 | 6.23E-19 | wgd | |
Csa04g01407 | Csa-Chr4:14099785 | Csa07g02025 | Csa-Chr7:19726107 | 5.74E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31556 | None | None | None | None | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01407 | - | - | csv:101212231 | 686.026 |