Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01407 ATGGGTGATCTTAATTTCTCCATCAATAATAATAACAATAATACTTGTTTTAGTTTATCCCCTTTTCAACATTACTCTTCTTCTTCTTCTTCTTCTTCTTATAACTCTCATTATCATCATGATCATCTCTTCTCACTTTCTTACTCCAATGATAACAACAGCAATACCCTAAAAAACATGACTACTTCTCATTATAATCCTTCTTCTTCTTCTTCTTCTTCTTCTCAAGTTCTTCTTCCTCTTTTGAGTTTAAGCCCTGCAAGAGTTGAACAAGATCATCATCATCCTCATAATAATATTATTGATCATGATCATAATGTTATTGATTATGATCAAAGTGATGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTTCTTCTTCTTCTAATAACTCTGATTTGATTTTGAGGCTTTCTTCAACTGAGATCTCAGATCAAGAAGATCACACCCATCAATTGCAAGAACTTTCATCTAATAATTCTATTACTAGTAATAGTAATGGAGTTAATAAGGGTCAATATTGGATTCCAACTCCTACTCAGATTCTCATTGGTCCAACTCAATTCTCTTGCCCTCTTTGTTTCAAGACTTTCAATAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGGAAAGGGCCACAATCACTAAGAGGAACACAACCAACAGCAATGTTGAGGCTGCCATGTTACTGTTGTGCAATAGGATGCAGAAACAACATAGACCATCCAAGATCAAAGCCATTAAAAGACTTTAGAACACTTCAGACACATTACAAAAGAAAACATGGGATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTTAAAGGAGATTGGAGAACACATGAGAAGAATTGTGGGAAACTTTGGCATTGCACATGTGGCTCTGATTTTAAGCATAAAAGGTCTCTTAAAGATCATATCAAAGCCTTTGGACTTGGCCATGCTGCTTATGGGATTGATGATCATCATAATCATCATCATTCTTTTGATAATGAAGATGATGACCCAGCTTCTGATATTGAAACATGA 1062 35.31 MGDLNFSINNNNNNTCFSLSPFQHYSSSSSSSSYNSHYHHDHLFSLSYSNDNNSNTLKNMTTSHYNPSSSSSSSSQVLLPLLSLSPARVEQDHHHPHNNIIDHDHNVIDYDQSDVTVALHLGLPTPSSSSNNSDLILRLSSTEISDQEDHTHQLQELSSNNSITSNSNGVNKGQYWIPTPTQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAIGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVKGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGLGHAAYGIDDHHNHHHSFDNEDDDPASDIET* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14099785 14102965 - CsaV3_4G024150.1 Csa04g01407 527017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01407 353 SMART c2h2final6 190 212 IPR013087 -
Csa04g01407 353 SMART c2h2final6 237 269 IPR013087 -
Csa04g01407 353 SMART c2h2final6 274 294 IPR013087 -
Csa04g01407 353 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 11 352 - -
Csa04g01407 353 SUPERFAMILY beta-beta-alpha zinc fingers 255 294 IPR036236 -
Csa04g01407 353 Gene3D Classic Zinc Finger 189 212 - -
Csa04g01407 353 Gene3D Classic Zinc Finger 250 327 - -
Csa04g01407 353 MobiDBLite consensus disorder prediction 146 165 - -
Csa04g01407 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Csa04g01407 353 PANTHER ZINC FINGER PROTEIN WIP2 11 352 IPR043584 GO:0003700|GO:0010468
Csa04g01407 353 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Csa04g01407 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 301 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03608 Csa-Chr3:32155979 Csa04g01407 Csa-Chr4:14099785 5.74E-120 dispersed
Csa04g01407 Csa-Chr4:14099785 Csa04g02111 Csa-Chr4:21785444 3.41E-125 dispersed
Csa01g01464 Csa-Chr1:10319081 Csa04g01407 Csa-Chr4:14099785 1.37E-101 transposed
Csa05g01484 Csa-Chr5:17144798 Csa04g01407 Csa-Chr4:14099785 4.89E-99 transposed
Csa03g03266 Csa-Chr3:29869314 Csa04g01407 Csa-Chr4:14099785 6.23E-19 wgd
Csa04g01407 Csa-Chr4:14099785 Csa07g02025 Csa-Chr7:19726107 5.74E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31556 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01407 - - csv:101212231 686.026