Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01425 ATGTTGGACCTCAATCTCTGCATTCTCCCCGGAGAGTTCACTTCCGATGGAACCGGTTTACATCCCTTCAATCTTTCCCCTTCCGGAGTTGAGAGTCCCATTTCATCCTCCGTCCATAACGCCGATCATTCCAACGTCAATGGCGATGATGACTCTTCTTCTAACGCCGATTGTGGGTTCACTTTCTCTTTCAGCATCCTCAATAACAGCAACGACGATCAGCGTGACCGGACGGCTCAGTTTCCTGTCGCCGGCGGGTTTTCCTCCGATGTCTATTCTCAAAGGAAATGGGCGGATTCTGATTTTGTTAGAGCCACTAACGGAATCGTGGTTCAAAAATCTGCTCATCCGGCGAAAAAGGGTCGGCGAGGCCCCAAATCAAGAAGCTCTCAGTATCGTGGGGTTACGTATTATCGCAGAACAGGGAGATGGGAATCGCATATCTGGGATAGTGGGAAACAAGTCTATTTGGGCGGTTTTGATACTGCTCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCACGCTGATATAAATTTCAATATCAGCGACTATAATGAAGAAATTAAACAGATGGGTAATTTTAGTAAAGAGGAGTTTGTACATATTCTTCGAAGGCAGAGCACTGGATTTTCAAGAGGAAGTTCTAAGTACAGAGGTGTTACTCTGCACAAATGTGGGAGATGGGAAGCTCGAATGGGGCAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAAAGTTCCTATGAGATGGAGCTTGCTTTTGAATCTGAAAACCAAGACATGGGTGATATTGACTTGAACTTGGGTATTGCTCCTCCTTGTCCATCTGAAGATCAAAAGGACAATCTTAATGGCTGTGCTCCAAGTAATTTGTGTAACTTAAATAAATCAAATTCTGAGAGATCTGAGTTCATAATGCTTGCTGAGAAACATGCTTCTATGGCTATAAGAGCAAACCCTTCTTTTTTGAGTCCTCCCAATTTCTTTCCTACCTACCAGGAGAGAGCAATGGAGAAGAAAATGGAAGTTGAATCTTTACCCAACTGTTGTTGGCGGCCAATCTCAGTGCCCTACGGCGGAGCAACTTCAGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTAATTCTCCGGCCGCCGTTGTTCCTCCGCCCTCCCCTCGCCATCTTCTTCCATTGCCGCCATTCCTCCACCACCACATTCCGCCTTCTATTCCGGCCACTAATACCGTAACTCACTTCTATTGCAAGACCTGA 1371 45.66 MLDLNLCILPGEFTSDGTGLHPFNLSPSGVESPISSSVHNADHSNVNGDDDSSSNADCGFTFSFSILNNSNDDQRDRTAQFPVAGGFSSDVYSQRKWADSDFVRATNGIVVQKSAHPAKKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYNEEIKQMGNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMELAFESENQDMGDIDLNLGIAPPCPSEDQKDNLNGCAPSNLCNLNKSNSERSEFIMLAEKHASMAIRANPSFLSPPNFFPTYQERAMEKKMEVESLPNCCWRPISVPYGGATSVPFFSTAASSGFPSNSPAAVVPPPSPRHLLPLPPFLHHHIPPSIPATNTVTHFYCKT* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14237172 14241024 - CsaV3_4G024330.1 Csa04g01425 527035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01425 456 MobiDBLite consensus disorder prediction 29 53 - -
Csa04g01425 456 CDD AP2 222 282 IPR001471 GO:0003700|GO:0006355
Csa04g01425 456 Gene3D AP2/ERF domain 130 189 IPR036955 GO:0003700|GO:0006355
Csa04g01425 456 Gene3D AP2/ERF domain 222 281 IPR036955 GO:0003700|GO:0006355
Csa04g01425 456 PRINTS Ethylene responsive element binding protein signature 224 235 IPR001471 GO:0003700|GO:0006355
Csa04g01425 456 PRINTS Ethylene responsive element binding protein signature 262 282 IPR001471 GO:0003700|GO:0006355
Csa04g01425 456 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 453 - -
Csa04g01425 456 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 453 - -
Csa04g01425 456 ProSiteProfiles AP2/ERF domain profile. 131 187 IPR001471 GO:0003700|GO:0006355
Csa04g01425 456 SUPERFAMILY DNA-binding domain 130 189 IPR016177 GO:0003677
Csa04g01425 456 ProSiteProfiles AP2/ERF domain profile. 223 280 IPR001471 GO:0003700|GO:0006355
Csa04g01425 456 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Csa04g01425 456 Pfam AP2 domain 222 272 IPR001471 GO:0003700|GO:0006355
Csa04g01425 456 Pfam AP2 domain 131 179 IPR001471 GO:0003700|GO:0006355
Csa04g01425 456 SUPERFAMILY DNA-binding domain 222 281 IPR016177 GO:0003677
Csa04g01425 456 SMART rav1_2 131 193 IPR001471 GO:0003700|GO:0006355
Csa04g01425 456 SMART rav1_2 223 286 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01425 Csa-Chr4:14237172 Csa06g02953 Csa-Chr6:25565842 1.34E-90 dispersed
Csa05g00635 Csa-Chr5:4200122 Csa04g01425 Csa-Chr4:14237172 9.03E-11 dispersed
Csa03g03241 Csa-Chr3:29729628 Csa04g01425 Csa-Chr4:14237172 9.60E-137 wgd
Csa04g01425 Csa-Chr4:14237172 Csa06g01688 Csa-Chr6:14811535 2.23E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31559 PF00847 AP2 1.50E-10 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01425 K09284 - csv:101211008 858.596