Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01425 | ATGTTGGACCTCAATCTCTGCATTCTCCCCGGAGAGTTCACTTCCGATGGAACCGGTTTACATCCCTTCAATCTTTCCCCTTCCGGAGTTGAGAGTCCCATTTCATCCTCCGTCCATAACGCCGATCATTCCAACGTCAATGGCGATGATGACTCTTCTTCTAACGCCGATTGTGGGTTCACTTTCTCTTTCAGCATCCTCAATAACAGCAACGACGATCAGCGTGACCGGACGGCTCAGTTTCCTGTCGCCGGCGGGTTTTCCTCCGATGTCTATTCTCAAAGGAAATGGGCGGATTCTGATTTTGTTAGAGCCACTAACGGAATCGTGGTTCAAAAATCTGCTCATCCGGCGAAAAAGGGTCGGCGAGGCCCCAAATCAAGAAGCTCTCAGTATCGTGGGGTTACGTATTATCGCAGAACAGGGAGATGGGAATCGCATATCTGGGATAGTGGGAAACAAGTCTATTTGGGCGGTTTTGATACTGCTCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCACGCTGATATAAATTTCAATATCAGCGACTATAATGAAGAAATTAAACAGATGGGTAATTTTAGTAAAGAGGAGTTTGTACATATTCTTCGAAGGCAGAGCACTGGATTTTCAAGAGGAAGTTCTAAGTACAGAGGTGTTACTCTGCACAAATGTGGGAGATGGGAAGCTCGAATGGGGCAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAAAGTTCCTATGAGATGGAGCTTGCTTTTGAATCTGAAAACCAAGACATGGGTGATATTGACTTGAACTTGGGTATTGCTCCTCCTTGTCCATCTGAAGATCAAAAGGACAATCTTAATGGCTGTGCTCCAAGTAATTTGTGTAACTTAAATAAATCAAATTCTGAGAGATCTGAGTTCATAATGCTTGCTGAGAAACATGCTTCTATGGCTATAAGAGCAAACCCTTCTTTTTTGAGTCCTCCCAATTTCTTTCCTACCTACCAGGAGAGAGCAATGGAGAAGAAAATGGAAGTTGAATCTTTACCCAACTGTTGTTGGCGGCCAATCTCAGTGCCCTACGGCGGAGCAACTTCAGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTAATTCTCCGGCCGCCGTTGTTCCTCCGCCCTCCCCTCGCCATCTTCTTCCATTGCCGCCATTCCTCCACCACCACATTCCGCCTTCTATTCCGGCCACTAATACCGTAACTCACTTCTATTGCAAGACCTGA | 1371 | 45.66 | MLDLNLCILPGEFTSDGTGLHPFNLSPSGVESPISSSVHNADHSNVNGDDDSSSNADCGFTFSFSILNNSNDDQRDRTAQFPVAGGFSSDVYSQRKWADSDFVRATNGIVVQKSAHPAKKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYNEEIKQMGNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMELAFESENQDMGDIDLNLGIAPPCPSEDQKDNLNGCAPSNLCNLNKSNSERSEFIMLAEKHASMAIRANPSFLSPPNFFPTYQERAMEKKMEVESLPNCCWRPISVPYGGATSVPFFSTAASSGFPSNSPAAVVPPPSPRHLLPLPPFLHHHIPPSIPATNTVTHFYCKT* | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 14237172 | 14241024 | - | CsaV3_4G024330.1 | Csa04g01425 | 527035 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01425 | 456 | MobiDBLite | consensus disorder prediction | 29 | 53 | - | - | |
Csa04g01425 | 456 | CDD | AP2 | 222 | 282 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01425 | 456 | Gene3D | AP2/ERF domain | 130 | 189 | IPR036955 | GO:0003700|GO:0006355 | |
Csa04g01425 | 456 | Gene3D | AP2/ERF domain | 222 | 281 | IPR036955 | GO:0003700|GO:0006355 | |
Csa04g01425 | 456 | PRINTS | Ethylene responsive element binding protein signature | 224 | 235 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01425 | 456 | PRINTS | Ethylene responsive element binding protein signature | 262 | 282 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01425 | 456 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 453 | - | - | |
Csa04g01425 | 456 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 1 | 453 | - | - | |
Csa04g01425 | 456 | ProSiteProfiles | AP2/ERF domain profile. | 131 | 187 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01425 | 456 | SUPERFAMILY | DNA-binding domain | 130 | 189 | IPR016177 | GO:0003677 | |
Csa04g01425 | 456 | ProSiteProfiles | AP2/ERF domain profile. | 223 | 280 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01425 | 456 | CDD | AP2 | 130 | 189 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01425 | 456 | Pfam | AP2 domain | 222 | 272 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01425 | 456 | Pfam | AP2 domain | 131 | 179 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01425 | 456 | SUPERFAMILY | DNA-binding domain | 222 | 281 | IPR016177 | GO:0003677 | |
Csa04g01425 | 456 | SMART | rav1_2 | 131 | 193 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01425 | 456 | SMART | rav1_2 | 223 | 286 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01425 | Csa-Chr4:14237172 | Csa06g02953 | Csa-Chr6:25565842 | 1.34E-90 | dispersed | |
Csa05g00635 | Csa-Chr5:4200122 | Csa04g01425 | Csa-Chr4:14237172 | 9.03E-11 | dispersed | |
Csa03g03241 | Csa-Chr3:29729628 | Csa04g01425 | Csa-Chr4:14237172 | 9.60E-137 | wgd | |
Csa04g01425 | Csa-Chr4:14237172 | Csa06g01688 | Csa-Chr6:14811535 | 2.23E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31559 | PF00847 | AP2 | 1.50E-10 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01425 | K09284 | - | csv:101211008 | 858.596 |