Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01435 ATGAATGCTCATGCCGGCAGGCTGAGAGAGTTAAGAGAAACAAGTCATCACGCGCATGATGGTAATGGAAGCGTGAATAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAAGTCAATGGATTAACTAGAAATACAGAGGATGGTCGAAAATCCACTGTTCATGCGCAGGACATTCTGCAAATACAACAGCAACAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCTCTCAAGGTTCTGCTTGTTGAAAATGACGACTCGACTCGCCATTTAGTCACTGCACTGCTTTGTAATTGCAGTTATGAAGTAATTGCGGCTGCAAATGGACTACACGCATGGAAGATGCTTGAAGATCTGACAAATCACATAGATCTCGTCCTAACAGAGGTGGTCATGCCCTGCTTATCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAAACGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTCAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGTCATAGCTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACTGGAAGTAACGATGATGAAGAAGAAGACAACGAGAGCATTGGTTTCAATATTGCTGATGGGAGTGATGATGGTAGTGGCACACAGAGTTCTTGGACTAAGCAAGCTATAGAAGTTGAAAGCCCTCGGCCGGTATCTGCATCAGCATGGGATCATAAACGTGAATGTCCTGATAGTACTTGTGCCCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCAGCAATTATTTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTGGAAACTGCTACCTTGGCTAAAGTTGAATTAGGCATGCACAGAAATCTAGATTTACAACTTGAACTCTCTACGGAGCATCCAACCAAGTTAGTTAATAGAAAACAGAACATCAGGCTTGAGATTGGGTCTAGTGGATTCAATGAGCAGTTCAACAAAGGACATCTGGACCTCAACTCTGAGAGCCCATCGAGCAAACTTAAGTATGAGGAAACAACTTTTACCGGTCTTGCTACCAATCTTACTGATTCCAAGATGGATGTCACTGTGTTTGAGGCACCGAGCTGCCATCCCAAGACCACAGACATTAAGAATAAAGATGTTACAGATTCAGAAGATTTTCCATCTCTTGAGCTTGGGTTAAAAAGGCTTAGAGGAGTTCAAAAGACGGGGAAAGCAGTCCAAGATGAGCGGAATGTTTTGAGACGCTCGGATTCTTCAGCCTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACTGGTAATGCTGGAAGTAACTCTCCGCCGAGTAACTCTCCACCTACTAATGGCTTAGAAGCTACAAATCAAGAGAACATGCAAGATGTTCGATCTCGTTCCAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGACAGCAATAATATTGACATGGGGTCCACTACCAATAATGCATTTTCCAAGTCCGTAGTTACTAATAACAAGTCAGCAATGGGATCAACAGTCAACTGTTTGTACCCATCGGCAGCTTTCCACCCTGTTAAGAATGACAGTCTATCTGTTCCACAGCAAGCTGATAATGTTAATAATGTCACAACTGCAACAATGCAAGCTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACACATATGATCCTACTCATCAGCTTGTCCACAATATGCAACGATTATCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTGCCACACATTGTGGGTCAAACAATGTTTTAAATGGTACTATAGAAGGTAATGCAGCGAATTATAGTGTGAATGGTAGTGCTTCGGGCAGTAACCACGGAAGCAATGGCCAAAATGGTAGTAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAGTTGGTCGAAGTGGGGATGCAAGCGGGAGCGGGAGCGGGAGTGGAAGCGGAAGTGGAAGCGGAAGTGGAAACCAAATGGACCAAAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGAAAGGAAAGATGCTTCCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCCGAACAGAGACCCCGTGTCAGGGGACAGTTTGTGAGACAAAACACGAGCGACAACACAAGCAATGCAGGAGATGGCTAA 2385 43.31 MNAHAGRLRELRETSHHAHDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRKSTVHAQDILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLCNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLSGIGLLCKIMNHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDDEEEDNESIGFNIADGSDDGSGTQSSWTKQAIEVESPRPVSASAWDHKRECPDSTCAQVVHSNADAFANNAAIILTAGCQVQKKQLETATLAKVELGMHRNLDLQLELSTEHPTKLVNRKQNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTFTGLATNLTDSKMDVTVFEAPSCHPKTTDIKNKDVTDSEDFPSLELGLKRLRGVQKTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPSNSPPTNGLEATNQENMQDVRSRSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVTNNKSAMGSTVNCLYPSAAFHPVKNDSLSVPQQADNVNNVTTATMQAQSNFVHRESQMQQLCHTYDPTHQLVHNMQRLSSEHNDFSLKKISAAATHCGSNNVLNGTIEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGVGRSGDASGSGSGSGSGSGSGSGNQMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSDNTSNAGDG* 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14305828 14313182 + CsaV3_4G024430.1 Csa04g01435 527045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01435 794 MobiDBLite consensus disorder prediction 677 699 - -
Csa04g01435 794 MobiDBLite consensus disorder prediction 750 765 - -
Csa04g01435 794 Gene3D - 88 367 - -
Csa04g01435 794 MobiDBLite consensus disorder prediction 707 742 - -
Csa04g01435 794 SUPERFAMILY CheY-like 87 213 IPR011006 -
Csa04g01435 794 Pfam CCT motif 740 782 IPR010402 GO:0005515
Csa04g01435 794 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 770 IPR045279 GO:0009736
Csa04g01435 794 MobiDBLite consensus disorder prediction 475 547 - -
Csa04g01435 794 MobiDBLite consensus disorder prediction 458 547 - -
Csa04g01435 794 MobiDBLite consensus disorder prediction 213 291 - -
Csa04g01435 794 SMART REC_2 89 204 IPR001789 GO:0000160
Csa04g01435 794 CDD psREC_PRR 91 194 - -
Csa04g01435 794 MobiDBLite consensus disorder prediction 459 474 - -
Csa04g01435 794 MobiDBLite consensus disorder prediction 20 34 - -
Csa04g01435 794 MobiDBLite consensus disorder prediction 1 55 - -
Csa04g01435 794 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160
Csa04g01435 794 MobiDBLite consensus disorder prediction 213 238 - -
Csa04g01435 794 MobiDBLite consensus disorder prediction 777 794 - -
Csa04g01435 794 ProSiteProfiles CCT domain profile. 740 782 IPR010402 GO:0005515
Csa04g01435 794 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 26 770 - -
Csa04g01435 794 MobiDBLite consensus disorder prediction 1 19 - -
Csa04g01435 794 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160
Csa04g01435 794 MobiDBLite consensus disorder prediction 677 794 - -
Csa04g01435 794 MobiDBLite consensus disorder prediction 262 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01435 Csa-Chr4:14305828 Csa05g00009 Csa-Chr5:54545 8.31E-19 dispersed
Csa04g01435 Csa-Chr4:14305828 Csa01g01861 Csa-Chr1:15634051 5.31E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31560 PF00072 Response_reg 8.90E-20 CL0304 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01435 K12129 - csv:101210765 1439.09