Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01435 | ATGAATGCTCATGCCGGCAGGCTGAGAGAGTTAAGAGAAACAAGTCATCACGCGCATGATGGTAATGGAAGCGTGAATAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAAGTCAATGGATTAACTAGAAATACAGAGGATGGTCGAAAATCCACTGTTCATGCGCAGGACATTCTGCAAATACAACAGCAACAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCTCTCAAGGTTCTGCTTGTTGAAAATGACGACTCGACTCGCCATTTAGTCACTGCACTGCTTTGTAATTGCAGTTATGAAGTAATTGCGGCTGCAAATGGACTACACGCATGGAAGATGCTTGAAGATCTGACAAATCACATAGATCTCGTCCTAACAGAGGTGGTCATGCCCTGCTTATCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAAACGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTCAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGTCATAGCTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACTGGAAGTAACGATGATGAAGAAGAAGACAACGAGAGCATTGGTTTCAATATTGCTGATGGGAGTGATGATGGTAGTGGCACACAGAGTTCTTGGACTAAGCAAGCTATAGAAGTTGAAAGCCCTCGGCCGGTATCTGCATCAGCATGGGATCATAAACGTGAATGTCCTGATAGTACTTGTGCCCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCAGCAATTATTTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTGGAAACTGCTACCTTGGCTAAAGTTGAATTAGGCATGCACAGAAATCTAGATTTACAACTTGAACTCTCTACGGAGCATCCAACCAAGTTAGTTAATAGAAAACAGAACATCAGGCTTGAGATTGGGTCTAGTGGATTCAATGAGCAGTTCAACAAAGGACATCTGGACCTCAACTCTGAGAGCCCATCGAGCAAACTTAAGTATGAGGAAACAACTTTTACCGGTCTTGCTACCAATCTTACTGATTCCAAGATGGATGTCACTGTGTTTGAGGCACCGAGCTGCCATCCCAAGACCACAGACATTAAGAATAAAGATGTTACAGATTCAGAAGATTTTCCATCTCTTGAGCTTGGGTTAAAAAGGCTTAGAGGAGTTCAAAAGACGGGGAAAGCAGTCCAAGATGAGCGGAATGTTTTGAGACGCTCGGATTCTTCAGCCTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACTGGTAATGCTGGAAGTAACTCTCCGCCGAGTAACTCTCCACCTACTAATGGCTTAGAAGCTACAAATCAAGAGAACATGCAAGATGTTCGATCTCGTTCCAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGACAGCAATAATATTGACATGGGGTCCACTACCAATAATGCATTTTCCAAGTCCGTAGTTACTAATAACAAGTCAGCAATGGGATCAACAGTCAACTGTTTGTACCCATCGGCAGCTTTCCACCCTGTTAAGAATGACAGTCTATCTGTTCCACAGCAAGCTGATAATGTTAATAATGTCACAACTGCAACAATGCAAGCTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACACATATGATCCTACTCATCAGCTTGTCCACAATATGCAACGATTATCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTGCCACACATTGTGGGTCAAACAATGTTTTAAATGGTACTATAGAAGGTAATGCAGCGAATTATAGTGTGAATGGTAGTGCTTCGGGCAGTAACCACGGAAGCAATGGCCAAAATGGTAGTAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAGTTGGTCGAAGTGGGGATGCAAGCGGGAGCGGGAGCGGGAGTGGAAGCGGAAGTGGAAGCGGAAGTGGAAACCAAATGGACCAAAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGAAAGGAAAGATGCTTCCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCCGAACAGAGACCCCGTGTCAGGGGACAGTTTGTGAGACAAAACACGAGCGACAACACAAGCAATGCAGGAGATGGCTAA | 2385 | 43.31 | MNAHAGRLRELRETSHHAHDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRKSTVHAQDILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLCNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLSGIGLLCKIMNHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDDEEEDNESIGFNIADGSDDGSGTQSSWTKQAIEVESPRPVSASAWDHKRECPDSTCAQVVHSNADAFANNAAIILTAGCQVQKKQLETATLAKVELGMHRNLDLQLELSTEHPTKLVNRKQNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTFTGLATNLTDSKMDVTVFEAPSCHPKTTDIKNKDVTDSEDFPSLELGLKRLRGVQKTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPSNSPPTNGLEATNQENMQDVRSRSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVTNNKSAMGSTVNCLYPSAAFHPVKNDSLSVPQQADNVNNVTTATMQAQSNFVHRESQMQQLCHTYDPTHQLVHNMQRLSSEHNDFSLKKISAAATHCGSNNVLNGTIEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGVGRSGDASGSGSGSGSGSGSGSGNQMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSDNTSNAGDG* | 795 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 14305828 | 14313182 | + | CsaV3_4G024430.1 | Csa04g01435 | 527045 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 677 | 699 | - | - | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 750 | 765 | - | - | |
Csa04g01435 | 794 | Gene3D | - | 88 | 367 | - | - | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 707 | 742 | - | - | |
Csa04g01435 | 794 | SUPERFAMILY | CheY-like | 87 | 213 | IPR011006 | - | |
Csa04g01435 | 794 | Pfam | CCT motif | 740 | 782 | IPR010402 | GO:0005515 | |
Csa04g01435 | 794 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 26 | 770 | IPR045279 | GO:0009736 | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 475 | 547 | - | - | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 458 | 547 | - | - | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 213 | 291 | - | - | |
Csa04g01435 | 794 | SMART | REC_2 | 89 | 204 | IPR001789 | GO:0000160 | |
Csa04g01435 | 794 | CDD | psREC_PRR | 91 | 194 | - | - | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 459 | 474 | - | - | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 20 | 34 | - | - | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Csa04g01435 | 794 | Pfam | Response regulator receiver domain | 91 | 202 | IPR001789 | GO:0000160 | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 213 | 238 | - | - | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 777 | 794 | - | - | |
Csa04g01435 | 794 | ProSiteProfiles | CCT domain profile. | 740 | 782 | IPR010402 | GO:0005515 | |
Csa04g01435 | 794 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 | 26 | 770 | - | - | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Csa04g01435 | 794 | ProSiteProfiles | Response regulatory domain profile. | 90 | 208 | IPR001789 | GO:0000160 | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 677 | 794 | - | - | |
Csa04g01435 | 794 | MobiDBLite | consensus disorder prediction | 262 | 277 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01435 | Csa-Chr4:14305828 | Csa05g00009 | Csa-Chr5:54545 | 8.31E-19 | dispersed | |
Csa04g01435 | Csa-Chr4:14305828 | Csa01g01861 | Csa-Chr1:15634051 | 5.31E-22 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31560 | PF00072 | Response_reg | 8.90E-20 | CL0304 | Csa | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01435 | K12129 | - | csv:101210765 | 1439.09 |