Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01452 ATGGGTAACGCCCATGGCCACCGCAAGCATTTCAACCATGGCGTAAATACCTCTCCAACCACTAACGCTCCTTCTCCCTCCAATAAATACTCTTCATCTGAACCCACTTCTCGAAATCCCTCCTCCTCCACGAATATGCAGTCCTTGCCCTACCCCCATGTTGATTCCAGCCTTCGAGCCCTTGCCGCTCAGGCTGAGGGCTTTGGTCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGTGTTACTAATTTAGCAGATGATGGTCCGGGATCACTTAGGTTCGGATGTCGTATGAAAGAGCCTCTTTGGATTATCTTTGAAGTTTCGGGCACAATTGACTTGTCTTCGTATTTGAGTGTGTCATCGTATAAGACTGTAGATGGTCGTGGTCAAAGGATAAAACTTACAGGAAAGGGGTTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGTAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCGAACTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCCGAGCAAGCACGGATATCACTATTTCTAGGTGTTACTTCTCACATCATGACAAGACAATGCTCATTGGAGCAGATCCTTCTCACATTGGTGACCGATGTATCCGTGTCACTATCCACCATTGTTTTTTCGATGGTACACGTCAACGGCATCCACGTGTTAGATATGCTCAAGTGCATCTATACAATAATTACACCAGAAACTGGGGTATCTATGCTGTCTGTGCTAGTGTAGAATCAAAGATATACTCTCAGTGCAACATATACGAAGCAGGAGAGAAAAAGGTGGCGTTTAAATATCTAACTGAAAAGGCAACAGACAAGGAAAAGCCGTCAAGTGGTTCCATATGGTCTGATGGAGACTTATTTGTAAAGGACACTCAAAGTGGGCTATTGGCTCCAACTGCTGAACACGACTTGTTTCATCCTTCACACCATTACTCTAGTTGGACAGTGCAACCTGCAACAGATGCTCTTAAACATATTCTCCAACATTGTACTGGATGTCAAAACATCCCAAGACCCGCTGATCAGCCTCTGGTACCTTAG 1131 44.65 MGNAHGHRKHFNHGVNTSPTTNAPSPSNKYSSSEPTSRNPSSSTNMQSLPYPHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRMKEPLWIIFEVSGTIDLSSYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRASTDITISRCYFSHHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESKIYSQCNIYEAGEKKVAFKYLTEKATDKEKPSSGSIWSDGDLFVKDTQSGLLAPTAEHDLFHPSHHYSSWTVQPATDALKHILQHCTGCQNIPRPADQPLVP* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14404195 14407986 + CsaV3_4G024600.1 Csa04g01452 527062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01452 376 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Csa04g01452 376 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
Csa04g01452 376 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Csa04g01452 376 SMART amb_all 76 289 IPR002022 -
Csa04g01452 376 PANTHER PECTATE LYASE 43 369 - -
Csa04g01452 376 PANTHER PECTATE LYASE 18-RELATED 43 369 IPR045032 GO:0030570
Csa04g01452 376 Pfam Pectate lyase 120 281 IPR002022 -
Csa04g01452 376 MobiDBLite consensus disorder prediction 13 50 - -
Csa04g01452 376 MobiDBLite consensus disorder prediction 1 50 - -
Csa04g01452 376 Gene3D - 50 359 IPR012334 -
Csa04g01452 376 SUPERFAMILY Pectin lyase-like 64 368 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01452 Csa-Chr4:14404195 Csa05g02772 Csa-Chr5:28428196 7.21E-48 dispersed
Csa04g01452 Csa-Chr4:14404195 Csa06g03495 Csa-Chr6:28593144 6.98E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01452 K01728 - csv:101219724 788.104