Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01462 ATGGCTGATGCTCATGAAACTGATAAGAACATTGAAATATGGAAAATTAAGAAGTTGATTAAAGCACTTGAAGCTGCAAGAGGTAATGGGACTAGCATGATCTCTCTCATCATGCCTCCGCGTGATCAAATTTCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAACATTAAAAGCAGGGTGAATCGGCAATCTGTTTTGGGCGCAATCACATCTGCACAGCAGAGACTCAAGCTGTATAACAAGGTTCCACCAAATGGGCTTGTGTTGTATACTGGGACAATCGTCACTGAAGATGGAAAAGAAAAGAAAGTCACAATTGATTTTGAGCCTTTTAGGCCTATAAATGCATCTCTTTATCTCTGTGACAACAAGTTCCACACGGAAGCCCTGAATGAATTGTTAGAATCTGATGACAAGTTTGGCTTCATTGTCATGGATGGTAATGGGACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTTCACAAATTTAGTGTTGACCTTCCGAAGAAACATGGAAGAGGAGGTCAGTCAGCACTTAGGTTTGCTCGTCTTCGGATGGAGAAGAGGCACAACTATGTTAGGAAAACAGCAGAGCTTGCAACCCAGTTCTTTATTAATCCTGCCACTAGTCAACCTAATGTTGCAGGGTTGATACTGGCTGGATCAGCTGACTTCAAGACAGAGCTCAGTCAATCAGACATGTTTGATCCCCGTCTTCAGGCCAAAATACTTAATGTTGTTGATGTCTCGTATGGAGGGGAAAATGGATTCAATCAGGCTATTGAATTGTCATCGGAGATCTTGTCTAATGTAAAATTTATTCAAGAGAAGCGCTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACAGGGAAATATGTTTTTGGTGTTGACGACACACTGAAAGCTCTGGAGATGGGTGCTGTTGAAATACTCATTGTTTGGGAAAATTTAGATATCAATAGGTATGTATTAAAGAATGCTGCCACAGGTGAGATTATTATAAAGCACTTGAACAAGGAACAGGAAGCCAATCAGAGCAACTTCCGTGACTCTGCCACCTCTGCTGAGTTGGAGGTTCAAGAAAAGATGGCATTGCTGGAATGGTTTGCAAACGAGTACAAGAAGTTTGGCTGCACATTGGAGTTTGTTACCAACAAATCACAGGAAGGATCACAGTTCTGCAGAGGTTTTGGTGGTATTGGAGGAATTCTTCGATACCAGCTTGACATAAGATCATTTGATGAACTATCTGATGGGGAAGAGTATGACGATTCTGAATAG 1311 41.5 MADAHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNAATGEIIIKHLNKEQEANQSNFRDSATSAELEVQEKMALLEWFANEYKKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYDDSE* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14459784 14462350 + CsaV3_4G024700.1 Csa04g01462 527072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01462 436 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 436 - -
Csa04g01462 436 Pfam eRF1 domain 2 144 277 IPR005141 -
Csa04g01462 436 Pfam eRF1 domain 1 18 138 IPR005140 -
Csa04g01462 436 SUPERFAMILY Translational machinery components 142 276 - -
Csa04g01462 436 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Csa04g01462 436 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 12 417 IPR004403 GO:0003747|GO:0006415
Csa04g01462 436 SUPERFAMILY L30e-like 278 420 IPR029064 -
Csa04g01462 436 Pfam eRF1 domain 3 281 418 IPR005142 -
Csa04g01462 436 SMART eRF1_1_2 4 140 IPR005140 -
Csa04g01462 436 Gene3D - 279 436 IPR029064 -
Csa04g01462 436 Gene3D eRF1 domain 1 1 135 IPR024049 -
Csa04g01462 436 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 436 IPR004403 GO:0003747|GO:0006415
Csa04g01462 436 Gene3D eRF1 domain 2 136 277 IPR042226 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01462 Csa-Chr4:14459784 Csa06g00762 Csa-Chr6:6151705 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01462 K03265 - csv:101218139 846.654