Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01463 ATGAATCCCCAAGTTAGCCAATGGTGTGTCTCAGCCAAGCCTTTTTTTGCTGTAGTGTTCTTGCAGTTTGGTCTTGCAGGAATGGACATTCTATCTAAAGCAGCTCTGAACCAAGGAATGAGCAACTATGTTCTTGTTGTTTATCGCCATGCAGTTGCCACAATTGTTATAGCCCCTTTTGCACTGATTTTTGACAAGAAGGTCAGACCAAAGATGACAATTCCAGTCTTTGCCAAGTTAATGGTCCTCAGCTTGCTAGAGCCTGTGATTGATCAAAACTTATATTTCATGGGAATGAAGTACACAACAGCAACTTTTGCAGCTGCCATGTGCAATATTCTTCCTGCCATTACCTTTGTAATGGCTTGGATTCTCAGGCTTGAGAAAGTAAGAATCAAAAGCATCAGAAGCCAAGCTAAGATAGTGGGAACCGTAGCAACAGTCGGAGGAGCTATGATAATGACACTAATGAAAGGTCCAATTGTAGAGCTATTTTGGGTTAAAGAAAGAGCTAACAACCCACAACAAAGAGGTGAAATCAGCCTTCAACATACAATCAAAGGTTCGATTATGATCACAATTGGTTGCTTCAGCTGGGCCTGTTTCATGATTCTTCAGGCAATAACATTGAAAGCTTACCCAGCTGAACTTTCTCTTACGGCATGGATTTGCTTATTGGGAACGGCGGAGGGAACTGTGGTGGCTTTGGTGATGGAAAGAGGAAACCCCGCCGTTTGGTCCATTACTTGGGGAACTAAATTACTCGCCGCCGTTTATAGTGGGATATTTTGTTCGGGACTTGCTTATTACATTCAAGGATTAGTGATGAAAGACAAAGGACCTGTTTTTGTCACTGCCTTTAGTCCTTTGAGTATGGTCATTGTAGCCATCATGAGTTCCTTTATTTTAGGCGAACGTCTTTACTTTGGAAGGGTACTTGGAGCAGTTGTGATAATTGTGGGACTATACCTTGTTGTTTGGGGCAAAAACAAAGATGAGAATTGTTCCTCAAGTGAAGACTTGAAATTGCCCACAAAACAAATATTGGAAGACAACAAGACGATGGAAACTTTAACAATTGAACCAAATAGTTGTATTGATTTAAAGAATAACAATGAGCAAAAATGA 1128 40.78 MNPQVSQWCVSAKPFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKKVRPKMTIPVFAKLMVLSLLEPVIDQNLYFMGMKYTTATFAAAMCNILPAITFVMAWILRLEKVRIKSIRSQAKIVGTVATVGGAMIMTLMKGPIVELFWVKERANNPQQRGEISLQHTIKGSIMITIGCFSWACFMILQAITLKAYPAELSLTAWICLLGTAEGTVVALVMERGNPAVWSITWGTKLLAAVYSGIFCSGLAYYIQGLVMKDKGPVFVTAFSPLSMVIVAIMSSFILGERLYFGRVLGAVVIIVGLYLVVWGKNKDENCSSSEDLKLPTKQILEDNKTMETLTIEPNSCIDLKNNNEQK* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14463477 14467416 - CsaV3_4G024710.1 Csa04g01463 527073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01463 375 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020|GO:0016021
Csa04g01463 375 Pfam EamA-like transporter family 23 135 IPR000620 GO:0016020|GO:0016021
Csa04g01463 375 PANTHER WAT1-RELATED PROTEIN 9 346 IPR030184 GO:0016021|GO:0022857
Csa04g01463 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 331 - -
Csa04g01463 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Csa04g01463 375 PANTHER WAT1-RELATED PROTEIN 9 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00265 Csa-Chr3:2140048 Csa04g01463 Csa-Chr4:14463477 4.01E-40 dispersed
Csa04g01463 Csa-Chr4:14463477 Csa05g00698 Csa-Chr5:4712690 1.01E-137 dispersed
Csa05g01816 Csa-Chr5:21474441 Csa04g01463 Csa-Chr4:14463477 1.56E-101 dispersed
Csa01g01566 Csa-Chr1:11299812 Csa04g01463 Csa-Chr4:14463477 3.17E-71 transposed
Csa02g01074 Csa-Chr2:10474274 Csa04g01463 Csa-Chr4:14463477 3.09E-84 transposed
Csa02g01181 Csa-Chr2:11574373 Csa04g01463 Csa-Chr4:14463477 4.73E-123 transposed
Csa04g01808 Csa-Chr4:17728900 Csa04g01463 Csa-Chr4:14463477 2.13E-130 transposed
Csa04g01903 Csa-Chr4:18776633 Csa04g01463 Csa-Chr4:14463477 5.05E-120 transposed
Csa05g02138 Csa-Chr5:24490966 Csa04g01463 Csa-Chr4:14463477 1.84E-115 transposed
Csa04g01463 Csa-Chr4:14463477 Csa05g01814 Csa-Chr5:21408081 3.83E-138 wgd
Csa04g01463 Csa-Chr4:14463477 Csa05g00696 Csa-Chr5:4642890 1.38E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01463 - - csv:101217902 741.11