Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01471 ATGAACATGAACGTGAACATAACCTCCATCAAAACTGCCTCTAATGGCATATGGCAAGGTGATAATCCTCTCCATTTCGCCTTCCCTCTTTTAATCCTTCAATCCGTTCTCATCCTCGTTCTCACTCGCTTCCTCGCCCTCCTCCTCAAACCCCTCCGTCAACCTAAAGTCATCGCCGAAATCGTCGGTGGGATTCTACTGGGTCCATCCGCTTTCGGACGTAACAAAACTTATTTAAACCACATTTTCCCCTCATGGAGTACTCCCATTCTCGAATCAGTTGCCAGTATTGGTCTGTTGTTCTTCCTCTTCCTCGTTGGACTCGAACTCGATTTGTCCTCCATTCGTCGTAGCGGTAAACGAGCATTCGGAATTGCTCTGGCGGGAATCTCCGTCCCATTCTTTTCTGGCATAGGTGTCGCCTTCGTCCTGCGTAAAACCGTCGATGGCGCTGACAAAGTTGGATACGGTCAGTTTATTGTATTCATGGGTGTCGCTCTATCCATCACTGCTTTTCCAGTTTTAGCTCGCATTTTAGCAGAGCTAAAGCTCCTCACCACCCAAGTCGGCGAAACAGCTATGGCCGCCGCCGCATTCAACGACGTAGCCGCTTGGATCCTCCTGGCACTCGCCGTTGCCTTAGCCGGAAACGGCGGCGAAGGCGGATCAGAGAAGAGTCCATTGGTTTCCGTATGGGTGTTACTTTCAGGAGCCGGGTTTGTGGTTTTCATGATGGTGGTCACTCGGCCCGGAATGAAATGGGTGGCGCGTCGATGCACGTACGAGCACGACGCCGTCGACGAGGCGTATATCTGTTTGACGTTGGTGGGGGTTTTGGTTTCGGGGTTTGTGACGGATTTGATCGGAATTCATTCCATTTTTGGGGGATTTATATTTGGATTGACGATCCCAAAAGGGGGAAGATTTGCAGAGAGATTGATCGAGAGAATTGAAGATTTCGTTTCGGGACTTCTTCTTCCTCTGTATTTTGCTTCAAGTGGATTAAAGACGGATGTTGCCAAAATAAAAGGGGGAAAAGCTTGGGGGTTGTTGGCGTTGGTTATATCGACGGCGTGCGCCGGTAAGATTCTGGCGACTTTTGTTGCGGCGATGATGTTTATGATTCCGACGAGGGAAGCGCTGGCGTTGGGTGTGCTTATGAATACAAAGGGCTTGGTTGAACTCATTGTCCTCAATATTGGGAAGGAGAAAAAGGTTTTAAACGACGAAGTGTTCGCCATATTAGTGTTAATGGCACTATTCACAACATTCATCACCACCCCCACCGTGATGGCAGTTTACAAGCCAGCCCGTGGTGGCTCCACCCCACCTACCCACCGTAAACTCCGAGACCTCTCCGCCAATGACTCCCCCGTTAACGACGAGCTACGAATCCTCGCTTGCGTCCACAGCTCCGGCAACGTGCCGTCCCTCATCACACTGACCGAGTCAACTCGCAGCACCAGAAATTCCTCCCTCAAACTCTTCGTAATGCACTTGGTCGAACTCACCGAGCGATCCTCTTCCATCATGATGGTACAACGCGCCCGCAAAAACGGCTTCCCTTTCTTCGCCAGGTTCCGCAAGGCCAGCGAGTGGCGAGACCAAATGGCTGCGGCCTTTCAGGCCTATAGCCAATTGGGCCGAGTCAAGGTACGGCCCACAACGGCCGTCTCTTCCTTAACTACTATGCATGAGGATATCTGCCACGTCGCGGATGATAAGAGGGTTACGATGATTATCTTGCCGTTTCACCGGAATTGGAGGGCATTTGGCGGCGGCGATGGGGCGGAGGAGGAGGTGGAGGAGAATGTGGGGCATGGTTGGAGAGTTGTGAACCAACGGGTTTTGAAGAATGCGCCTTGCTCTGTGGCGGTTCTTGTGGACCGGGGTTTTGGGGCCGGTGTGGCCCAGACGCCTGGGCCTGGGTCCATGATCTGTGTGGGTCAAAGGATTTGTGTTTTGTTTTTCGGTGGGCCTGATGATCGGGAGGCGTTGGAGTTGGGTGGCCGGATGGCGGAGCATCCGGCGGTGAAGGTGACGGTGGTTAGGTTTCGGCCGTCATCGGGGGATGTGACGGAGGGTAGTAATGTCATTTTGCGTCCGATGCATTCGAAGTCAAACGATAACCATTATAGCTTCATCACTACTCCCATCAACCGGGAAAAAGAAAAGGAGGTAGATGAAGCAGCATTGGCAGAATTCAAAAGCAAATGGGAAGCAACAGTTGAGTACAAAGAGAAGGAGGTCAGCAGCACAAACATGATAGTTGAAGGGGTGGTAGCCCTTGGGAAGGAAGACAGTTACGACCTAATCGTGGTCGGGAAAGGTCGGGTTCCCTCGAGCTTGGTGATGAAACTAGCGGACCGACCAGCAGAGCACGCGGAGTTGGGGCCAGTGGGAGACATATTGGCCAGCTCTGGCAAGGGAATAACATCTTCAATATTGATAGTTCAACAACATGGAGGAAGTGGCCACGTAGAAGAAGCTCCAGTTTTGAAGATAGCACAATCTAATAAGAATGAGCTGCCTATGTCAACTGATGGAACCTCAATTGATCATGTATAA 2568 51.32 MNMNVNITSIKTASNGIWQGDNPLHFAFPLLILQSVLILVLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKTYLNHIFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGKRAFGIALAGISVPFFSGIGVAFVLRKTVDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGGEGGSEKSPLVSVWVLLSGAGFVVFMMVVTRPGMKWVARRCTYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKAWGLLALVISTACAGKILATFVAAMMFMIPTREALALGVLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTPPTHRKLRDLSANDSPVNDELRILACVHSSGNVPSLITLTESTRSTRNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKASEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLTTMHEDICHVADDKRVTMIILPFHRNWRAFGGGDGAEEEVEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGAGVAQTPGPGSMICVGQRICVLFFGGPDDREALELGGRMAEHPAVKVTVVRFRPSSGDVTEGSNVILRPMHSKSNDNHYSFITTPINREKEKEVDEAALAEFKSKWEATVEYKEKEVSSTNMIVEGVVALGKEDSYDLIVVGKGRVPSSLVMKLADRPAEHAELGPVGDILASSGKGITSSILIVQQHGGSGHVEEAPVLKIAQSNKNELPMSTDGTSIDHV* 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14517737 14523638 - CsaV3_4G024790.1 Csa04g01471 527081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01471 855 Gene3D - 30 438 IPR038770 -
Csa04g01471 855 PANTHER BNAC06G14930D PROTEIN 5 836 - -
Csa04g01471 855 PANTHER CATION/H + ANTIPORTER 5 836 - -
Csa04g01471 855 Gene3D - 464 799 - -
Csa04g01471 855 Pfam Sodium/hydrogen exchanger family 37 430 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00628 Csa-Chr4:4174984 Csa04g01471 Csa-Chr4:14517737 0 dispersed
Csa04g00629 Csa-Chr4:4197249 Csa04g01471 Csa-Chr4:14517737 0 dispersed
Csa04g01471 Csa-Chr4:14517737 Csa04g02016 Csa-Chr4:20279918 1.75E-152 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01471 - - csv:101207589 1603.19