Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01471 ATGAACATGAACGTGAACATAACCTCCATCAAAACTGCCTCTAATGGCATATGGCAAGGTGATAATCCTCTCCATTTCGCCTTCCCTCTTTTAATCCTTCAATCCGTTCTCATCCTCGTTCTCACTCGCTTCCTCGCCCTCCTCCTCAAACCCCTCCGTCAACCTAAAGTCATCGCCGAAATCGTCGGTGGGATTCTACTGGGTCCATCCGCTTTCGGACGTAACAAAACTTATTTAAACCACATTTTCCCCTCATGGAGTACTCCCATTCTCGAATCAGTTGCCAGTATTGGTCTGTTGTTCTTCCTCTTCCTCGTTGGACTCGAACTCGATTTGTCCTCCATTCGTCGTAGCGGTAAACGAGCATTCGGAATTGCTCTGGCGGGAATCTCCGTCCCATTCTTTTCTGGCATAGGTGTCGCCTTCGTCCTGCGTAAAACCGTCGATGGCGCTGACAAAGTTGGATACGGTCAGTTTATTGTATTCATGGGTGTCGCTCTATCCATCACTGCTTTTCCAGTTTTAGCTCGCATTTTAGCAGAGCTAAAGCTCCTCACCACCCAAGTCGGCGAAACAGCTATGGCCGCCGCCGCATTCAACGACGTAGCCGCTTGGATCCTCCTGGCACTCGCCGTTGCCTTAGCCGGAAACGGCGGCGAAGGCGGATCAGAGAAGAGTCCATTGGTTTCCGTATGGGTGTTACTTTCAGGAGCCGGGTTTGTGGTTTTCATGATGGTGGTCACTCGGCCCGGAATGAAATGGGTGGCGCGTCGATGCACGTACGAGCACGACGCCGTCGACGAGGCGTATATCTGTTTGACGTTGGTGGGGGTTTTGGTTTCGGGGTTTGTGACGGATTTGATCGGAATTCATTCCATTTTTGGGGGATTTATATTTGGATTGACGATCCCAAAAGGGGGAAGATTTGCAGAGAGATTGATCGAGAGAATTGAAGATTTCGTTTCGGGACTTCTTCTTCCTCTGTATTTTGCTTCAAGTGGATTAAAGACGGATGTTGCCAAAATAAAAGGGGGAAAAGCTTGGGGGTTGTTGGCGTTGGTTATATCGACGGCGTGCGCCGGTAAGATTCTGGCGACTTTTGTTGCGGCGATGATGTTTATGATTCCGACGAGGGAAGCGCTGGCGTTGGGTGTGCTTATGAATACAAAGGGCTTGGTTGAACTCATTGTCCTCAATATTGGGAAGGAGAAAAAGGTTTTAAACGACGAAGTGTTCGCCATATTAGTGTTAATGGCACTATTCACAACATTCATCACCACCCCCACCGTGATGGCAGTTTACAAGCCAGCCCGTGGTGGCTCCACCCCACCTACCCACCGTAAACTCCGAGACCTCTCCGCCAATGACTCCCCCGTTAACGACGAGCTACGAATCCTCGCTTGCGTCCACAGCTCCGGCAACGTGCCGTCCCTCATCACACTGACCGAGTCAACTCGCAGCACCAGAAATTCCTCCCTCAAACTCTTCGTAATGCACTTGGTCGAACTCACCGAGCGATCCTCTTCCATCATGATGGTACAACGCGCCCGCAAAAACGGCTTCCCTTTCTTCGCCAGGTTCCGCAAGGCCAGCGAGTGGCGAGACCAAATGGCTGCGGCCTTTCAGGCCTATAGCCAATTGGGCCGAGTCAAGGTACGGCCCACAACGGCCGTCTCTTCCTTAACTACTATGCATGAGGATATCTGCCACGTCGCGGATGATAAGAGGGTTACGATGATTATCTTGCCGTTTCACCGGAATTGGAGGGCATTTGGCGGCGGCGATGGGGCGGAGGAGGAGGTGGAGGAGAATGTGGGGCATGGTTGGAGAGTTGTGAACCAACGGGTTTTGAAGAATGCGCCTTGCTCTGTGGCGGTTCTTGTGGACCGGGGTTTTGGGGCCGGTGTGGCCCAGACGCCTGGGCCTGGGTCCATGATCTGTGTGGGTCAAAGGATTTGTGTTTTGTTTTTCGGTGGGCCTGATGATCGGGAGGCGTTGGAGTTGGGTGGCCGGATGGCGGAGCATCCGGCGGTGAAGGTGACGGTGGTTAGGTTTCGGCCGTCATCGGGGGATGTGACGGAGGGTAGTAATGTCATTTTGCGTCCGATGCATTCGAAGTCAAACGATAACCATTATAGCTTCATCACTACTCCCATCAACCGGGAAAAAGAAAAGGAGGTAGATGAAGCAGCATTGGCAGAATTCAAAAGCAAATGGGAAGCAACAGTTGAGTACAAAGAGAAGGAGGTCAGCAGCACAAACATGATAGTTGAAGGGGTGGTAGCCCTTGGGAAGGAAGACAGTTACGACCTAATCGTGGTCGGGAAAGGTCGGGTTCCCTCGAGCTTGGTGATGAAACTAGCGGACCGACCAGCAGAGCACGCGGAGTTGGGGCCAGTGGGAGACATATTGGCCAGCTCTGGCAAGGGAATAACATCTTCAATATTGATAGTTCAACAACATGGAGGAAGTGGCCACGTAGAAGAAGCTCCAGTTTTGAAGATAGCACAATCTAATAAGAATGAGCTGCCTATGTCAACTGATGGAACCTCAATTGATCATGTATAA 2568 51.32 MNMNVNITSIKTASNGIWQGDNPLHFAFPLLILQSVLILVLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKTYLNHIFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGKRAFGIALAGISVPFFSGIGVAFVLRKTVDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGGEGGSEKSPLVSVWVLLSGAGFVVFMMVVTRPGMKWVARRCTYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKAWGLLALVISTACAGKILATFVAAMMFMIPTREALALGVLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTPPTHRKLRDLSANDSPVNDELRILACVHSSGNVPSLITLTESTRSTRNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKASEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLTTMHEDICHVADDKRVTMIILPFHRNWRAFGGGDGAEEEVEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGAGVAQTPGPGSMICVGQRICVLFFGGPDDREALELGGRMAEHPAVKVTVVRFRPSSGDVTEGSNVILRPMHSKSNDNHYSFITTPINREKEKEVDEAALAEFKSKWEATVEYKEKEVSSTNMIVEGVVALGKEDSYDLIVVGKGRVPSSLVMKLADRPAEHAELGPVGDILASSGKGITSSILIVQQHGGSGHVEEAPVLKIAQSNKNELPMSTDGTSIDHV* 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14517737 14523638 - CsaV3_4G024790.1 Csa04g01471 527081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01471 855 Gene3D - 30 438 IPR038770 -
Csa04g01471 855 PANTHER BNAC06G14930D PROTEIN 5 836 - -
Csa04g01471 855 PANTHER CATION/H + ANTIPORTER 5 836 - -
Csa04g01471 855 Gene3D - 464 799 - -
Csa04g01471 855 Pfam Sodium/hydrogen exchanger family 37 430 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01471 - - - csv:101207589 1603.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00628 Csa-Chr4:4174984 Csa04g01471 Csa-Chr4:14517737 0 dispersed
Csa04g00629 Csa-Chr4:4197249 Csa04g01471 Csa-Chr4:14517737 0 dispersed
Csa04g01471 Csa-Chr4:14517737 Csa04g02016 Csa-Chr4:20279918 1.75E-152 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g700 Blo01g01126 . Bda01g00243 . . . . . . . Cma03g00436 . Car03g00383 . Sed14g0469 . . Bhi03g01986 Tan03g0976 Cmetu08g1910 . . . . Cla04g00826 Cam04g0889 Cec04g0974 Cco04g1032 Clacu04g0882 Cmu04g0873 Cre04g0930 . Cone10ag0299 . . . Csa04g01471 Chy08g00771 . . . . . . . Bma01g01881 . . Cmo03g00449 . . . . . . Cpe19g00367 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g01615 . 11 805 Antiporter Super Family AT2G13620 72.5 0.0e+00 1157.9
Csa04g00628 . 11 785 Antiporter Super Family AT2G13620 50.4 2.2e-208 722.6
Csa04g00627 . 15 776 Antiporter Super Family AT2G13620 50.1 3.5e-206 715.3
Csa04g01471 . 78 848 Antiporter Super Family AT3G53720 69.2 1.5e-291 998.8
Csa04g00626 . 83 779 Antiporter Super Family AT3G53720 50.6 3.5e-184 642.1
Csa04g00627 . 86 773 Antiporter Super Family AT3G53720 50.2 1.0e-183 640.6
Csa04g00626 . 1 779 Antiporter Super Family AT5G41610 69.6 2.8e-309 1057.7
Csa04g00627 . 9 797 Antiporter Super Family AT5G41610 67.1 9.7e-302 1032.7
Csa04g00628 . 1 797 Antiporter Super Family AT5G41610 65.2 2.7e-296 1014.6
Csa04g00629 . 2 791 Antiporter Super Family AT5G41610 63.9 6.5e-282 966.8
Csa04g01471 . 10 851 Antiporter Super Family AT5G41610 50.5 1.9e-209 726.1
Csa04g00627 . 16 797 Antiporter Super Family AT4G23700 65.4 3.7e-293 1004.2
Csa04g00628 . 11 802 Antiporter Super Family AT4G23700 64.7 9.5e-289 989.6
Csa04g00626 . 9 796 Antiporter Super Family AT4G23700 62.5 9.9e-278 953.0
Csa04g00629 . 10 791 Antiporter Super Family AT4G23700 62.6 6.0e-275 943.7
Csa04g00628 . 4 783 Antiporter Super Family AT3G17630 63.2 3.8e-274 941.0
Csa04g00627 . 9 796 Antiporter Super Family AT3G17630 62.8 2.5e-273 938.3
Csa04g00626 . 11 779 Antiporter Super Family AT3G17630 63.7 8.7e-271 929.9
Csa04g00629 . 6 791 Antiporter Super Family AT3G17630 59.6 4.2e-257 884.4
Csa04g01471 . 10 819 Antiporter Super Family AT3G17630 52.9 2.1e-208 722.6
Csa04g00628 . 4 785 Antiporter Super Family AT1G64170 57.6 5.6e-241 830.9
Csa04g00627 . 5 777 Antiporter Super Family AT1G64170 57.8 2.4e-239 825.5
Csa04g00626 . 15 784 Antiporter Super Family AT1G64170 56.7 3.1e-231 798.5
Csa04g00629 . 3 791 Antiporter Super Family AT1G64170 55.0 2.9e-229 792.0
Csa02g01615 . 11 805 Antiporter Super Family AT2G13620 72.5 0.0e+00 1157.9
Csa04g00628 . 11 785 Antiporter Super Family AT2G13620 50.4 2.2e-208 722.6
Csa04g00627 . 15 776 Antiporter Super Family AT2G13620 50.1 3.5e-206 715.3
Csa04g00628 . 4 785 Antiporter Super Family AT1G64170 57.6 5.6e-241 830.9
Csa04g00627 . 5 777 Antiporter Super Family AT1G64170 57.8 2.4e-239 825.5
Csa04g00626 . 15 784 Antiporter Super Family AT1G64170 56.7 3.1e-231 798.5
Csa04g00629 . 3 791 Antiporter Super Family AT1G64170 55.0 2.9e-229 792.0
Csa04g00627 . 16 797 Antiporter Super Family AT4G23700 65.4 3.7e-293 1004.2
Csa04g00628 . 11 802 Antiporter Super Family AT4G23700 64.7 9.5e-289 989.6
Csa04g00626 . 9 796 Antiporter Super Family AT4G23700 62.5 9.9e-278 953.0
Csa04g00629 . 10 791 Antiporter Super Family AT4G23700 62.6 6.0e-275 943.7
Csa04g00626 . 1 779 Antiporter Super Family AT5G41610 69.6 2.8e-309 1057.7
Csa04g00627 . 9 797 Antiporter Super Family AT5G41610 67.1 9.7e-302 1032.7
Csa04g00628 . 1 797 Antiporter Super Family AT5G41610 65.2 2.7e-296 1014.6
Csa04g00629 . 2 791 Antiporter Super Family AT5G41610 63.9 6.5e-282 966.8
Csa04g01471 . 10 851 Antiporter Super Family AT5G41610 50.5 1.9e-209 726.1
Csa04g00628 . 4 783 Antiporter Super Family AT3G17630 63.2 3.8e-274 941.0
Csa04g00627 . 9 796 Antiporter Super Family AT3G17630 62.8 2.5e-273 938.3
Csa04g00626 . 11 779 Antiporter Super Family AT3G17630 63.7 8.7e-271 929.9
Csa04g00629 . 6 791 Antiporter Super Family AT3G17630 59.6 4.2e-257 884.4
Csa04g01471 . 10 819 Antiporter Super Family AT3G17630 52.9 2.1e-208 722.6
Csa04g01471 . 78 848 Antiporter Super Family AT3G53720 69.2 1.5e-291 998.8
Csa04g00626 . 83 779 Antiporter Super Family AT3G53720 50.6 3.5e-184 642.1
Csa04g00627 . 86 773 Antiporter Super Family AT3G53720 50.2 1.0e-183 640.6
Csa07g02004 . 47 791 Antiporter Super Family AT3G52080 54.1 4.7e-232 801.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01471 Csa_Chr04 FPKM 26.17079 26.033447 20.793438 17.965654 26.295662 26.703665 25.571196 47.271976 44.022682 41.135853