Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01476 ATGGCCGGCAAGGGAGAAGGTCCGGCTATCGGTATCGATCTCGGTACCACTTACTCTTGTGTGGGTGTTTGGCAACACGATCGTGTTGAGATCATTGCCAATGACCAGGGTAACAGGACTACTCCTTCCTATGTTGCCTTCACCGATACTGAGCGTTTGATTGGTGATGCTGCTAAGAACCAGGTCGCCATGAACCCGATTAACACCGTCTTTGACGCAAAGAGGTTGATCGGTAGAAGATTCAGCGACTCTTCAGTCCAAAGTGACATCAAGTTGTGGCCATTCAAGGTCATCCCTGGACCAGGTGACAAGCCCATGATCATTGTCAGCTACAAGGGTGAAGAGAAGCAGTTCGCTGCTGAAGAAATCTCTTCCATGGTTCTTATTAAGATGCGTGAAATTGCCGAAGCTTACCTCGGTTCCACTGTGAAGAACGCCGTTGTCACTGTTCCTGCTTACTTCAACGACTCGCAACGTCAAGCCACCAAGGATGCTGGTGTCATTGCTGGTCTCAACGTCATGAGGATTATCAATGAACCCACCGCTGCTGCCATTGCCTACGGTCTTGACAAGAAAGCAACAAGTGTCGGTGAAAAGAATGTCTTGATCTTCGATCTTGGTGGTGGTACTTTTGATGTCTCTCTTCTCACCATTGAAGAGGGTATCTTCGAGGTGAAGGCCACTGCTGGAGACACTCATCTTGGTGGGGAAGATTTTGACAACAGACTTGTCAACCACTTTGTTCAAGAATTTAAGAGGAAGCACAAGAAGGATATCAGTGGCAACCCCAGAGCTCTTAGAAGGCTGAGAACTTCTTGTGAGAGAGCTAAGAGAACTCTCTCATCTACTGCTCAGACCACCATTGAGATCGATTCTTTGTACGAAGGAATTGACTTTTACTCCACCATTACTCGTGCTAGATTTGAGGAATTGAACATGGATCTTTTCAGAAAGTGTATGGAACCCGTCGAGAAGTGTTTGAGAGATGCCAAGATGGACAAGAGCACTGTCCATGATGTTGTTCTTGTTGGTGGTTCTACTAGAATTCCCAAGGTCCAACAGTTGTTGCAAGACTTCTTCAATGGCAAGGAACTCTGCAAGAGCATTAACCCCGATGAAGCCGTTGCCTACGGTGCTGCTGTACAAGCTGCCATCTTGAGCGGTGAAGGCAATGAGAAGGTGCAGGATCTTCTTCTATTGGATGTCACCCCTCTTTCTCTTGGTTTGGAAACCGCCGGTGGAGTCATGACTGTTCTTATCCCAAGAAACACCACAATTCCCACGAAGAAGGAACAAGTCTTCTCTACATACTCCGACAACCAGCCCGGTGTGTTGATCCAAGTATACGAAGGTGAAAGGACAAGAACCCGCGACAACAACTTGCTTGGAAAATTCGAACTCTCCGGAATCCCTCCAGCTCCCAGGGGTGTTCCACAAATCACAGTGTGCTTTGATATCGATGCCAACGGTATCTTGAACGTCTCTGCCGAAGACAAGACCACAGGTCAAAAGAACAAAATCACCATTACTAACGACAAGGGAAGACTCTCCAAGGAGGAGATTGAGAAGATGGTCCAAGAGGCAGAGAAGTACAAGTCTGAAGATGAGGAGCACAAGAAAAAGGTTGAAGCCAAGAATGCTTTGGAGAACTACGCTTACAACATGAGGAACACTGTGAACGACGAGAAGATTGGTGCTAAGCTTTCACCCGCCGACAAGAAGAAGATCGACGATGCCATCGAGCAGTCCATCCAATGGCTGGACGCCAACCAGCTAGCTGAGGCTGACGAGTTCGAAGACAAGATGAAGGAGTTGGAGAGCATTTGCAACCCAATCATTGCCAAGATGTACCAAGGTGCCGGAGCTGATATGGGTGGCGGTGCAGACGACAGTGCTCCTTCCGGCGGTAGCGGTGCTGGACCCAAGATTGAGGAAGTCGACTAA 1944 48.2 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDSSVQSDIKLWPFKVIPGPGDKPMIIVSYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVNDEKIGAKLSPADKKKIDDAIEQSIQWLDANQLAEADEFEDKMKELESICNPIIAKMYQGAGADMGGGADDSAPSGGSGAGPKIEEVD* 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14570618 14574300 + CsaV3_4G024840.1 Csa04g01476 527086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01476 647 Gene3D - 192 366 - -
Csa04g01476 647 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 628 - -
Csa04g01476 647 MobiDBLite consensus disorder prediction 619 647 - -
Csa04g01476 647 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Csa04g01476 647 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Csa04g01476 647 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Csa04g01476 647 Gene3D - 545 619 IPR029048 -
Csa04g01476 647 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Csa04g01476 647 Coils Coil 521 541 - -
Csa04g01476 647 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Csa04g01476 647 PRINTS 70kDa heat shock protein signature 8 21 - -
Csa04g01476 647 PRINTS 70kDa heat shock protein signature 36 48 - -
Csa04g01476 647 PRINTS 70kDa heat shock protein signature 58 66 - -
Csa04g01476 647 PRINTS 70kDa heat shock protein signature 146 166 - -
Csa04g01476 647 PRINTS 70kDa heat shock protein signature 209 219 - -
Csa04g01476 647 PRINTS 70kDa heat shock protein signature 337 353 - -
Csa04g01476 647 PRINTS 70kDa heat shock protein signature 369 389 - -
Csa04g01476 647 PRINTS 70kDa heat shock protein signature 396 415 - -
Csa04g01476 647 PRINTS 70kDa heat shock protein signature 477 493 - -
Csa04g01476 647 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Csa04g01476 647 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Csa04g01476 647 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Csa04g01476 647 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Csa04g01476 647 PANTHER HEAT SHOCK PROTEIN 70KDA 1 628 IPR013126 GO:0005524|GO:0140662
Csa04g01476 647 Gene3D - 10 384 - -
Csa04g01476 647 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 622 IPR029048 -
Csa04g01476 647 Gene3D - 71 126 - -
Csa04g01476 647 Gene3D Actin; Chain A, domain 4 235 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01338 Csa-Chr3:10118261 Csa04g01476 Csa-Chr4:14570618 1.45E-90 dispersed
Csa04g01476 Csa-Chr4:14570618 Csa05g01826 Csa-Chr5:21611631 0 dispersed
Csa04g01885 Csa-Chr4:18631896 Csa04g01476 Csa-Chr4:14570618 2.36E-11 transposed
Csa04g02200 Csa-Chr4:22790290 Csa04g01476 Csa-Chr4:14570618 1.29E-62 transposed
Csa04g01476 Csa-Chr4:14570618 Csa05g01833 Csa-Chr5:21670377 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01476 K03283 - csv:101215599 1224.92